Wall clock time and date at job start Tue Mar 31 2020 13:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47327 * 2 1 4 4 N 1.46493 * 109.46974 * 120.00586 * 2 1 3 5 5 C 1.35852 * 126.13770 * 300.01465 * 4 2 1 6 6 N 1.30164 * 109.00596 * 179.74467 * 5 4 2 7 7 C 1.35762 * 108.86905 * 0.38835 * 6 5 4 8 8 C 1.47323 * 126.24033 * 179.88461 * 7 6 5 9 9 O 1.21625 * 120.00214 * 179.69105 * 8 7 6 10 10 N 1.34783 * 119.99682 * 359.68330 * 8 7 6 11 11 C 1.46492 * 119.99766 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47191 * 180.02562 * 11 10 8 13 13 H 1.08995 * 110.91132 * 308.90411 * 12 11 10 14 14 C 1.54907 * 111.00367 * 72.80172 * 12 11 10 15 15 N 1.47430 * 104.83058 * 155.08461 * 14 12 11 16 16 C 1.36939 * 125.64572 * 155.91145 * 15 14 12 17 17 H 1.07999 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99813 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47179 * 90.00038 * 20 18 16 22 22 H 1.48506 * 109.46836 * 210.00049 * 20 18 16 23 23 H 1.48500 * 109.47068 * 329.99551 * 20 18 16 24 24 C 1.47014 * 108.70471 * 335.87277 * 15 14 12 25 25 C 1.54331 * 107.26998 * 1.05754 * 24 15 14 26 26 H 1.09000 * 110.87198 * 263.75468 * 25 24 15 27 27 O 1.42903 * 110.71518 * 140.55636 * 25 24 15 28 28 C 1.35380 * 126.13626 * 120.00039 * 4 2 1 29 29 H 1.08998 * 109.46589 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.47203 * 59.99541 * 1 2 3 31 31 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46530 * 240.00201 * 2 1 3 33 33 H 1.09002 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47427 * 300.00670 * 3 2 1 35 35 H 1.08997 * 109.46729 * 60.00263 * 3 2 1 36 36 H 1.08000 * 125.49536 * 359.97438 * 5 4 2 37 37 H 0.96998 * 119.99674 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.47186 * 60.00181 * 11 10 8 39 39 H 1.09007 * 109.47518 * 300.00316 * 11 10 8 40 40 H 1.08997 * 110.36868 * 273.92606 * 14 12 11 41 41 H 1.09001 * 110.36760 * 36.25145 * 14 12 11 42 42 H 0.97001 * 120.00199 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.88743 * 241.64099 * 24 15 14 44 44 H 1.08997 * 109.88268 * 120.47140 * 24 15 14 45 45 H 0.96700 * 114.00311 * 66.48015 * 27 25 24 46 46 H 1.08001 * 126.56556 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.7679 -0.3372 2.4837 6 7 2.3589 -1.1824 3.2778 7 6 3.0167 -2.1033 2.5279 8 6 3.8139 -3.2326 3.0374 9 8 4.3533 -3.9961 2.2593 10 7 3.9456 -3.4195 4.3656 11 6 4.7389 -4.5421 4.8722 12 6 4.7264 -4.5261 6.4021 13 1 5.0011 -3.5426 6.7832 14 6 3.3470 -4.9687 6.9507 15 7 3.6276 -5.4911 8.3005 16 6 2.7286 -5.5640 9.3309 17 1 1.7147 -5.2204 9.1882 18 6 3.1207 -6.0788 10.5590 19 7 4.3564 -6.4971 10.7329 20 14 1.8945 -6.1776 11.9647 21 1 1.1943 -7.4863 11.9196 22 1 2.6124 -6.0446 13.2579 23 1 0.9024 -5.0804 11.8342 24 6 5.0322 -5.9215 8.3568 25 6 5.6578 -5.6256 6.9774 26 1 5.6424 -6.5136 6.3454 27 8 6.9915 -5.1334 7.1222 28 6 2.7998 -1.7960 1.2166 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.1714 0.5066 2.7976 37 1 3.5152 -2.8107 4.9861 38 1 5.7651 -4.4519 4.5159 39 1 4.3115 -5.4793 4.5155 40 1 2.6698 -4.1164 7.0070 41 1 2.9219 -5.7512 6.3220 42 1 4.6304 -6.8571 11.5909 43 1 5.0845 -6.9899 8.5660 44 1 5.5601 -5.3639 9.1305 45 1 7.6137 -5.7823 7.4784 46 1 3.1786 -2.3321 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958281378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:11 Heat of formation + Delta-G solvation = -29.589736 kcal Electronic energy + Delta-G solvation = -26837.396295 eV Core-core repulsion = 22955.604256 eV Total energy + Delta-G solvation = -3881.792039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.20914 -40.61058 -39.63625 -36.91052 -36.64448 -36.04699 -34.01545 -32.17505 -31.52116 -30.48130 -29.26040 -28.18419 -27.29681 -25.57539 -24.00928 -23.67832 -22.20737 -21.62685 -21.39140 -20.63728 -18.94561 -18.54651 -18.15469 -17.39179 -17.15048 -16.77145 -16.68481 -16.10862 -15.74772 -15.67547 -15.36201 -15.00156 -14.79241 -14.67547 -14.58942 -14.40358 -14.02118 -13.92048 -13.63161 -13.20966 -13.16509 -13.10805 -13.09808 -12.71495 -12.43836 -12.36615 -12.29173 -12.14809 -11.92765 -11.78828 -11.55586 -11.29291 -11.05276 -10.80429 -10.74102 -10.73330 -10.13771 -9.57795 -8.94197 -7.86426 -5.23188 0.58495 1.45923 1.46057 1.48286 1.56994 1.66049 2.28487 2.48102 2.55679 3.23543 3.33824 3.43574 3.57965 3.59842 3.71555 3.85259 3.89289 3.95748 4.11607 4.14242 4.18318 4.40639 4.41948 4.48491 4.61357 4.67043 4.69390 4.74745 4.84357 4.86435 4.88337 4.94872 5.05585 5.25534 5.26622 5.26662 5.39888 5.44317 5.48445 5.49016 5.70398 6.12853 6.16086 6.49822 6.88494 6.90354 7.07019 7.23195 7.73102 8.37103 9.23821 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002457 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.854526 B =11391.448343 C =12594.866518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.161 4.161 4 N -0.443 5.443 5 C 0.196 3.804 6 N -0.498 5.498 7 C -0.099 4.099 8 C 0.598 3.402 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.148 3.852 12 C -0.089 4.089 13 H 0.082 0.918 14 C 0.141 3.859 15 N -0.625 5.625 16 C -0.244 4.244 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.982 3.018 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.162 3.838 25 C 0.098 3.902 26 H 0.078 0.922 27 O -0.569 6.569 28 C 0.045 3.955 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.241 0.759 37 H 0.412 0.588 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.248 0.752 43 H 0.015 0.985 44 H 0.020 0.980 45 H 0.393 0.607 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 16.143 -25.200 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.124 5.124 5 C -0.088 4.088 6 N -0.217 5.217 7 C -0.227 4.227 8 C 0.387 3.613 9 O -0.464 6.464 10 N -0.358 5.358 11 C 0.024 3.976 12 C -0.109 4.109 13 H 0.100 0.900 14 C 0.016 3.984 15 N -0.352 5.352 16 C -0.372 4.372 17 H 0.103 0.897 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.810 3.190 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.193 1.193 24 C 0.036 3.964 25 C 0.037 3.963 26 H 0.096 0.904 27 O -0.376 6.376 28 C -0.096 4.096 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.257 0.743 37 H 0.248 0.752 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.033 0.967 44 H 0.038 0.962 45 H 0.243 0.757 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.764 16.160 -25.007 30.327 hybrid contribution -0.234 -0.744 1.029 1.292 sum -5.998 15.416 -23.978 29.130 Atomic orbital electron populations 1.22193 0.91772 1.03034 1.04878 1.21929 0.96504 0.94650 0.84993 1.22189 1.01568 0.93186 1.04881 1.45925 1.36424 1.20934 1.09145 1.25648 1.02735 1.01650 0.78773 1.70573 1.12096 1.04965 1.34083 1.20412 1.09400 1.00995 0.91906 1.17266 0.79064 0.82996 0.82024 1.90741 1.50647 1.47761 1.57295 1.45782 1.52319 1.30780 1.06891 1.21150 0.95787 0.89364 0.91347 1.22386 0.95294 0.99522 0.93678 0.89969 1.21748 0.94638 0.96461 0.85564 1.44627 1.08397 1.73419 1.08782 1.19487 0.92547 1.35060 0.90142 0.89736 1.25697 0.98617 1.01352 1.00375 1.70164 1.17587 1.48427 1.23880 0.85032 0.77832 0.78030 0.78156 1.21176 1.22047 1.19278 1.21590 0.84741 0.96811 0.93215 1.22889 0.82194 0.95600 0.95572 0.90395 1.86396 1.19092 1.44545 1.87613 1.22793 0.96874 0.91004 0.98973 0.91091 0.88092 0.92855 0.86573 0.92761 0.88105 0.91079 0.74290 0.75199 0.91071 0.91323 0.93196 0.95213 0.94323 0.96653 0.96179 0.75700 0.78243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 9.24 71.98 0.67 0.13 16 2 C 0.12 0.63 3.57 44.99 0.16 0.79 16 3 C -0.16 -0.48 9.24 71.98 0.67 0.18 16 4 N -0.44 -5.97 2.59 -505.87 -1.31 -7.28 16 5 C 0.20 3.20 11.53 180.10 2.08 5.27 16 6 N -0.50 -12.61 11.01 -188.81 -2.08 -14.69 16 7 C -0.10 -2.70 6.98 40.50 0.28 -2.42 16 8 C 0.60 19.54 7.81 86.63 0.68 20.22 16 9 O -0.58 -21.71 16.88 -4.11 -0.07 -21.78 16 10 N -0.71 -22.45 5.50 -466.45 -2.56 -25.02 16 11 C 0.15 4.83 5.13 86.38 0.44 5.27 16 12 C -0.09 -3.30 2.77 -9.40 -0.03 -3.32 16 13 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 14 C 0.14 5.97 6.65 86.85 0.58 6.55 16 15 N -0.63 -33.12 3.39 -691.99 -2.35 -35.47 16 16 C -0.24 -13.97 10.28 84.03 0.86 -13.11 16 17 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 18 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 19 N -0.95 -58.07 10.31 21.65 0.22 -57.84 16 20 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.16 8.20 5.15 86.73 0.45 8.65 16 25 C 0.10 3.80 3.80 31.78 0.12 3.92 16 26 H 0.08 2.74 8.04 -2.39 -0.02 2.72 16 27 O -0.57 -20.30 13.39 -148.98 -1.99 -22.30 16 28 C 0.04 0.89 11.22 83.72 0.94 1.83 16 29 H 0.07 0.22 7.94 -2.39 -0.02 0.20 16 30 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.12 0.35 8.07 -2.38 -0.02 0.33 16 33 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.07 0.20 7.94 -2.39 -0.02 0.18 16 36 H 0.24 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.41 12.70 8.19 -92.71 -0.76 11.94 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.07 2.27 7.96 -2.38 -0.02 2.25 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.03 1.24 7.91 -2.39 -0.02 1.23 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.02 0.85 7.51 -2.39 -0.02 0.83 16 44 H 0.02 1.15 7.29 -2.39 -0.02 1.13 16 45 H 0.39 10.82 9.12 -74.06 -0.68 10.14 16 46 H 0.20 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -79.72 382.00 -0.20 -79.92 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.44 Total: 25.40 kcal Atomic # 6 Polarization: 22.14 SS G_CDS: 8.36 Total: 30.50 kcal Atomic # 7 Polarization: -132.21 SS G_CDS: -8.08 Total: -140.29 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.06 Total: -44.08 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -79.72 -0.20 -79.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958281378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.333 kcal (2) G-P(sol) polarization free energy of solvation -79.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds