Wall clock time and date at job start Tue Mar 31 2020 13:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47182 * 2 1 4 4 N 1.46498 * 109.46869 * 120.00130 * 2 1 3 5 5 C 1.35850 * 126.13372 * 299.97574 * 4 2 1 6 6 N 1.30174 * 109.00423 * 180.02562 * 5 4 2 7 7 C 1.35757 * 108.86510 * 359.97438 * 6 5 4 8 8 C 1.47321 * 126.23448 * 179.97438 * 7 6 5 9 9 O 1.21631 * 120.00131 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00378 * 0.03020 * 8 7 6 11 11 C 1.46494 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.09008 * 110.88445 * 57.42402 * 12 11 10 14 14 C 1.54908 * 111.00368 * 293.54522 * 12 11 10 15 15 N 1.47425 * 104.92961 * 204.85960 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08994 * 110.87038 * 96.25177 * 25 24 15 27 27 O 1.42903 * 110.72138 * 219.45307 * 25 24 15 28 28 C 1.35376 * 126.13924 * 120.26464 * 4 2 1 29 29 H 1.08998 * 109.47306 * 300.00485 * 1 2 3 30 30 H 1.09009 * 109.46707 * 59.99779 * 1 2 3 31 31 H 1.08996 * 109.47032 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47187 * 240.00005 * 2 1 3 33 33 H 1.09000 * 109.46988 * 299.99971 * 3 2 1 34 34 H 1.09000 * 109.46682 * 59.99755 * 3 2 1 35 35 H 1.08995 * 109.46661 * 179.97438 * 3 2 1 36 36 H 1.08002 * 125.50105 * 359.96374 * 5 4 2 37 37 H 0.97004 * 119.99840 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.47369 * 59.99227 * 11 10 8 39 39 H 1.09004 * 109.47192 * 299.99245 * 11 10 8 40 40 H 1.09002 * 110.36632 * 323.75356 * 14 12 11 41 41 H 1.08995 * 110.36781 * 85.96593 * 14 12 11 42 42 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 44 44 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 45 45 H 0.96696 * 113.99847 * 293.52357 * 27 25 24 46 46 H 1.08001 * 126.55927 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7684 -0.3366 2.4837 6 7 2.3641 -1.1784 3.2780 7 6 3.0168 -2.1029 2.5282 8 6 3.8154 -3.2311 3.0378 9 8 4.3549 -3.9947 2.2598 10 7 3.9480 -3.4173 4.3660 11 6 4.7425 -4.5390 4.8727 12 6 4.7319 -4.5215 6.4026 13 1 3.7119 -4.5654 6.7846 14 6 5.4764 -3.2777 6.9489 15 7 5.9232 -3.6653 8.2993 16 6 6.1978 -2.8031 9.3271 17 1 6.0921 -1.7382 9.1815 18 6 6.6130 -3.2979 10.5558 19 7 6.7423 -4.5957 10.7331 20 14 6.9869 -2.1218 11.9582 21 1 5.7704 -1.3339 12.2812 22 1 7.4071 -2.8953 13.1542 23 1 8.0800 -1.2014 11.5542 24 6 6.0243 -5.1336 8.3562 25 6 5.5924 -5.6773 6.9780 26 1 6.4598 -5.8642 6.3451 27 8 4.8109 -6.8646 7.1251 28 6 2.8039 -1.7929 1.2168 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.1726 0.5078 2.7976 37 1 3.5180 -2.8082 4.9865 38 1 5.7684 -4.4482 4.5158 39 1 4.3157 -5.4767 4.5168 40 1 6.3339 -3.0418 6.3187 41 1 4.8004 -2.4245 7.0033 42 1 7.0321 -4.9414 11.5918 43 1 5.3627 -5.5205 9.1313 44 1 7.0524 -5.4287 8.5655 45 1 5.3024 -7.6173 7.4815 46 1 3.1865 -2.3264 0.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958281379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:15 Heat of formation + Delta-G solvation = -3.050445 kcal Electronic energy + Delta-G solvation = -26864.209738 eV Core-core repulsion = 22983.568529 eV Total energy + Delta-G solvation = -3880.641209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44827 -39.27326 -38.03618 -36.41228 -35.05870 -34.46611 -32.17297 -31.42916 -30.11911 -29.25711 -27.96559 -27.47698 -25.57774 -24.00744 -23.45186 -22.43659 -20.77950 -20.42627 -19.95918 -19.42837 -17.83070 -16.90766 -16.79441 -16.29457 -15.88190 -15.72505 -15.18542 -14.92458 -14.70945 -14.37021 -14.13744 -14.04975 -13.86718 -13.56642 -13.34694 -13.02162 -12.85258 -12.79795 -12.56228 -12.33498 -12.05614 -11.89631 -11.86126 -11.37844 -11.14828 -10.87171 -10.75163 -10.53587 -10.41496 -10.05732 -10.02186 -9.96911 -9.74577 -9.68127 -9.14552 -8.92110 -8.63105 -8.59869 -6.83436 -5.69909 -3.03726 1.49245 2.27830 2.31299 3.42892 3.45908 3.46823 3.48087 3.64641 3.92445 4.23735 4.27857 4.35211 4.46158 4.49768 4.81342 4.85924 4.95537 5.03800 5.04641 5.11696 5.15346 5.28706 5.36015 5.41189 5.48220 5.52635 5.58721 5.77289 5.85220 5.94993 6.11834 6.13956 6.27753 6.32473 6.47200 6.61037 6.70637 6.79460 6.93547 7.45108 7.54819 7.55348 7.80035 7.88104 8.24888 8.26884 8.45009 9.21653 9.82430 10.47739 11.42025 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.002507 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.557484 B =11168.026647 C =12473.372438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.165 4.165 4 N -0.453 5.453 5 C 0.186 3.814 6 N -0.460 5.460 7 C -0.059 4.059 8 C 0.601 3.399 9 O -0.553 6.553 10 N -0.708 5.708 11 C 0.134 3.866 12 C -0.107 4.107 13 H 0.089 0.911 14 C 0.141 3.859 15 N -0.603 5.603 16 C -0.227 4.227 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.152 3.848 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.566 6.566 28 C 0.031 3.969 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.207 0.793 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.044 0.956 42 H 0.253 0.747 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.375 0.625 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 8.430 -23.181 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.097 4.097 6 N -0.178 5.178 7 C -0.188 4.188 8 C 0.387 3.613 9 O -0.432 6.432 10 N -0.358 5.358 11 C 0.011 3.989 12 C -0.127 4.127 13 H 0.108 0.892 14 C 0.015 3.985 15 N -0.330 5.330 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.027 3.973 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.371 6.371 28 C -0.108 4.108 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.224 0.776 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.222 0.778 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.882 8.318 -22.948 27.148 hybrid contribution 0.456 0.600 0.490 0.899 sum -11.426 8.918 -22.459 26.729 Atomic orbital electron populations 1.22192 0.92823 1.03523 1.03654 1.21568 0.95764 0.94222 0.86189 1.22197 1.02451 0.93936 1.03656 1.45654 1.37636 1.22104 1.08236 1.25018 1.03996 1.02061 0.78657 1.70662 1.10676 1.03905 1.32573 1.20615 1.07391 1.00297 0.90497 1.16891 0.79371 0.82643 0.82429 1.90778 1.49206 1.46399 1.56800 1.45824 1.52308 1.31083 1.06630 1.21371 0.95519 0.88849 0.93207 1.22595 1.01132 0.96515 0.92426 0.89222 1.21603 0.95325 0.94009 0.87557 1.44362 1.79182 1.01973 1.07457 1.19035 1.38464 0.88772 0.89290 0.90294 1.24811 1.01748 0.96162 0.97806 1.69930 1.53081 1.10402 1.23731 0.86166 0.78138 0.79625 0.81639 1.21128 1.21620 1.21169 1.21851 1.00207 0.84087 0.91166 1.23130 0.91953 0.84210 0.98428 0.92538 1.86430 1.41263 1.21816 1.87598 1.22573 0.97684 0.90803 0.99693 0.91355 0.90225 0.91513 0.87879 0.90222 0.91349 0.91474 0.77634 0.75426 0.91416 0.91198 0.95934 0.93765 0.93691 0.92448 0.93690 0.77823 0.79700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 9.24 37.16 0.34 -0.16 16 2 C 0.13 0.52 3.57 -67.93 -0.24 0.27 16 3 C -0.16 -0.53 9.24 37.16 0.34 -0.19 16 4 N -0.45 -3.57 2.59 -111.25 -0.29 -3.86 16 5 C 0.19 1.72 11.52 -89.90 -1.04 0.68 16 6 N -0.46 -6.04 11.01 -11.03 -0.12 -6.16 16 7 C -0.06 -0.82 6.98 -83.09 -0.58 -1.40 16 8 C 0.60 9.83 7.81 -12.57 -0.10 9.73 16 9 O -0.55 -10.30 16.88 5.25 0.09 -10.21 16 10 N -0.71 -11.33 5.40 -61.42 -0.33 -11.66 16 11 C 0.13 2.24 5.12 -4.05 -0.02 2.22 16 12 C -0.11 -2.00 2.83 -88.47 -0.25 -2.25 16 13 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 14 C 0.14 3.00 6.40 -2.53 -0.02 2.98 16 15 N -0.60 -15.70 3.40 -169.86 -0.58 -16.28 16 16 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.38 10.33 55.49 0.57 -26.81 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.15 3.74 5.16 -2.92 -0.02 3.72 16 25 C 0.08 1.62 3.80 -24.90 -0.09 1.53 16 26 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 27 O -0.57 -10.30 13.39 -35.23 -0.47 -10.77 16 28 C 0.03 0.33 11.22 -16.64 -0.19 0.14 16 29 H 0.07 0.21 7.94 -51.93 -0.41 -0.21 16 30 H 0.08 0.12 8.14 -51.92 -0.42 -0.30 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.07 0.22 7.94 -51.93 -0.41 -0.19 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.41 6.36 8.05 -40.82 -0.33 6.03 16 38 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.06 1.58 7.31 -51.93 -0.38 1.20 16 44 H 0.04 1.20 7.51 -51.93 -0.39 0.81 16 45 H 0.38 5.30 9.12 45.56 0.42 5.72 16 46 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -35.94 381.86 -9.03 -44.97 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.53 Total: 7.32 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -2.10 Total: 10.33 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.75 Total: -64.75 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.38 Total: -20.98 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.94 -9.03 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958281379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.920 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds