Wall clock time and date at job start Tue Mar 31 2020 13:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47182 * 2 1 4 4 N 1.46498 * 109.46869 * 120.00130 * 2 1 3 5 5 C 1.35850 * 126.13372 * 299.97574 * 4 2 1 6 6 N 1.30174 * 109.00423 * 180.02562 * 5 4 2 7 7 C 1.35757 * 108.86510 * 359.97438 * 6 5 4 8 8 C 1.47321 * 126.23448 * 179.97438 * 7 6 5 9 9 O 1.21631 * 120.00131 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00378 * 0.03020 * 8 7 6 11 11 C 1.46494 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.09008 * 110.88445 * 57.42402 * 12 11 10 14 14 C 1.54908 * 111.00368 * 293.54522 * 12 11 10 15 15 N 1.47425 * 104.92961 * 204.85960 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08994 * 110.87038 * 96.25177 * 25 24 15 27 27 O 1.42903 * 110.72138 * 219.45307 * 25 24 15 28 28 C 1.35376 * 126.13924 * 120.26464 * 4 2 1 29 29 H 1.08998 * 109.47306 * 300.00485 * 1 2 3 30 30 H 1.09009 * 109.46707 * 59.99779 * 1 2 3 31 31 H 1.08996 * 109.47032 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47187 * 240.00005 * 2 1 3 33 33 H 1.09000 * 109.46988 * 299.99971 * 3 2 1 34 34 H 1.09000 * 109.46682 * 59.99755 * 3 2 1 35 35 H 1.08995 * 109.46661 * 179.97438 * 3 2 1 36 36 H 1.08002 * 125.50105 * 359.96374 * 5 4 2 37 37 H 0.97004 * 119.99840 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.47369 * 59.99227 * 11 10 8 39 39 H 1.09004 * 109.47192 * 299.99245 * 11 10 8 40 40 H 1.09002 * 110.36632 * 323.75356 * 14 12 11 41 41 H 1.08995 * 110.36781 * 85.96593 * 14 12 11 42 42 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 44 44 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 45 45 H 0.96696 * 113.99847 * 293.52357 * 27 25 24 46 46 H 1.08001 * 126.55927 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7684 -0.3366 2.4837 6 7 2.3641 -1.1784 3.2780 7 6 3.0168 -2.1029 2.5282 8 6 3.8154 -3.2311 3.0378 9 8 4.3549 -3.9947 2.2598 10 7 3.9480 -3.4173 4.3660 11 6 4.7425 -4.5390 4.8727 12 6 4.7319 -4.5215 6.4026 13 1 3.7119 -4.5654 6.7846 14 6 5.4764 -3.2777 6.9489 15 7 5.9232 -3.6653 8.2993 16 6 6.1978 -2.8031 9.3271 17 1 6.0921 -1.7382 9.1815 18 6 6.6130 -3.2979 10.5558 19 7 6.7423 -4.5957 10.7331 20 14 6.9869 -2.1218 11.9582 21 1 5.7704 -1.3339 12.2812 22 1 7.4071 -2.8953 13.1542 23 1 8.0800 -1.2014 11.5542 24 6 6.0243 -5.1336 8.3562 25 6 5.5924 -5.6773 6.9780 26 1 6.4598 -5.8642 6.3451 27 8 4.8109 -6.8646 7.1251 28 6 2.8039 -1.7929 1.2168 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.1726 0.5078 2.7976 37 1 3.5180 -2.8082 4.9865 38 1 5.7684 -4.4482 4.5158 39 1 4.3157 -5.4767 4.5168 40 1 6.3339 -3.0418 6.3187 41 1 4.8004 -2.4245 7.0033 42 1 7.0321 -4.9414 11.5918 43 1 5.3627 -5.5205 9.1313 44 1 7.0524 -5.4287 8.5655 45 1 5.3024 -7.6173 7.4815 46 1 3.1865 -2.3264 0.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958281379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:14 Heat of formation + Delta-G solvation = -29.527946 kcal Electronic energy + Delta-G solvation = -26865.357889 eV Core-core repulsion = 22983.568529 eV Total energy + Delta-G solvation = -3881.789359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.20930 -40.61504 -39.62365 -36.91031 -36.64448 -36.04147 -34.00158 -32.17451 -31.51813 -30.48053 -29.25192 -28.18405 -27.30941 -25.57216 -24.00936 -23.70071 -22.21302 -21.57893 -21.37698 -20.65944 -18.94478 -18.54588 -18.15587 -17.39866 -17.12408 -16.78069 -16.68320 -16.13930 -15.74569 -15.66092 -15.36939 -15.00293 -14.79217 -14.68519 -14.58976 -14.39959 -14.00236 -13.92337 -13.62044 -13.20820 -13.16543 -13.10146 -13.09589 -12.68767 -12.44884 -12.36648 -12.32920 -12.14812 -11.92053 -11.79168 -11.54518 -11.29528 -11.05568 -10.80791 -10.74085 -10.72630 -10.13920 -9.57781 -8.94094 -7.86263 -5.22910 0.58537 1.45888 1.46055 1.49784 1.55842 1.66060 2.28247 2.48437 2.55712 3.23425 3.33803 3.43625 3.57258 3.59780 3.72619 3.85360 3.88911 3.95744 4.11655 4.13767 4.18263 4.40353 4.41889 4.48440 4.60918 4.66863 4.69378 4.73788 4.84372 4.86349 4.88238 4.95620 5.05590 5.25681 5.26663 5.27467 5.39162 5.43674 5.48033 5.48857 5.70122 6.12860 6.15831 6.49754 6.88482 6.90387 7.06640 7.23126 7.72875 8.37480 9.24057 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.002507 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.557484 B =11168.026647 C =12473.372438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.161 4.161 4 N -0.443 5.443 5 C 0.196 3.804 6 N -0.498 5.498 7 C -0.099 4.099 8 C 0.598 3.402 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.148 3.852 12 C -0.090 4.090 13 H 0.082 0.918 14 C 0.142 3.858 15 N -0.625 5.625 16 C -0.245 4.245 17 H 0.085 0.915 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.982 3.018 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.276 1.276 24 C 0.161 3.839 25 C 0.098 3.902 26 H 0.078 0.922 27 O -0.569 6.569 28 C 0.045 3.955 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.241 0.759 37 H 0.412 0.588 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.050 0.950 42 H 0.248 0.752 43 H 0.020 0.980 44 H 0.016 0.984 45 H 0.393 0.607 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 10.311 -25.169 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 C -0.219 4.219 4 N -0.124 5.124 5 C -0.088 4.088 6 N -0.217 5.217 7 C -0.227 4.227 8 C 0.387 3.613 9 O -0.464 6.464 10 N -0.358 5.358 11 C 0.024 3.976 12 C -0.109 4.109 13 H 0.100 0.900 14 C 0.016 3.984 15 N -0.352 5.352 16 C -0.373 4.373 17 H 0.103 0.897 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.810 3.190 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.202 1.202 24 C 0.036 3.964 25 C 0.038 3.962 26 H 0.096 0.904 27 O -0.376 6.376 28 C -0.096 4.096 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.257 0.743 37 H 0.248 0.752 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.243 0.757 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.120 10.222 -24.971 30.003 hybrid contribution 0.767 0.078 1.024 1.281 sum -12.353 10.300 -23.948 28.847 Atomic orbital electron populations 1.22188 0.91676 1.03072 1.04879 1.21929 0.96573 0.94580 0.84989 1.22195 1.01537 0.93279 1.04877 1.45925 1.36262 1.21092 1.09142 1.25649 1.02692 1.01700 0.78777 1.70578 1.12124 1.04938 1.34081 1.20409 1.09489 1.00912 0.91909 1.17265 0.79066 0.82996 0.82018 1.90742 1.50663 1.47735 1.57300 1.45780 1.52266 1.30853 1.06893 1.21140 0.95770 0.89367 0.91334 1.22391 1.00036 0.94810 0.93700 0.89993 1.21713 0.95711 0.95356 0.85584 1.44669 1.79293 1.02458 1.08789 1.19451 1.38070 0.89578 0.90241 0.89732 1.25695 1.02113 0.97838 1.00355 1.70153 1.53975 1.12076 1.23847 0.85105 0.78208 0.77596 0.78137 1.20232 1.21992 1.20187 1.21636 0.97706 0.83829 0.93243 1.22883 0.92921 0.84846 0.95552 0.90395 1.86397 1.41653 1.21970 1.87606 1.22790 0.96826 0.91051 0.98969 0.91085 0.88101 0.92762 0.86564 0.88084 0.91103 0.92852 0.74298 0.75199 0.91380 0.91034 0.95330 0.93192 0.94310 0.96173 0.96614 0.75691 0.78233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 9.24 71.98 0.67 0.17 16 2 C 0.12 0.64 3.57 44.99 0.16 0.80 16 3 C -0.16 -0.55 9.24 71.98 0.67 0.11 16 4 N -0.44 -6.01 2.59 -505.87 -1.31 -7.32 16 5 C 0.20 3.22 11.52 180.10 2.08 5.30 16 6 N -0.50 -12.68 11.01 -188.82 -2.08 -14.76 16 7 C -0.10 -2.71 6.98 40.50 0.28 -2.43 16 8 C 0.60 19.59 7.81 86.63 0.68 20.27 16 9 O -0.58 -21.73 16.88 -4.13 -0.07 -21.80 16 10 N -0.71 -22.54 5.40 -466.48 -2.52 -25.06 16 11 C 0.15 4.85 5.12 86.38 0.44 5.29 16 12 C -0.09 -3.32 2.83 -9.40 -0.03 -3.35 16 13 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 14 C 0.14 6.00 6.40 86.85 0.56 6.55 16 15 N -0.62 -33.13 3.40 -691.30 -2.35 -35.48 16 16 C -0.24 -14.04 10.28 84.03 0.86 -13.18 16 17 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 18 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 19 N -0.95 -58.06 10.33 21.65 0.22 -57.84 16 20 Si 0.98 46.49 29.55 68.60 2.03 48.51 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 C 0.16 8.17 5.16 86.68 0.45 8.61 16 25 C 0.10 3.82 3.80 31.78 0.12 3.94 16 26 H 0.08 2.74 8.04 -2.39 -0.02 2.72 16 27 O -0.57 -20.26 13.39 -148.98 -1.99 -22.25 16 28 C 0.05 0.90 11.22 83.72 0.94 1.83 16 29 H 0.07 0.20 7.94 -2.39 -0.02 0.18 16 30 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.12 0.36 8.07 -2.39 -0.02 0.34 16 33 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.07 0.23 7.94 -2.39 -0.02 0.21 16 35 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.24 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.41 12.78 8.05 -92.71 -0.75 12.04 16 38 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.03 1.20 8.00 -2.39 -0.02 1.18 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.02 1.15 7.31 -2.38 -0.02 1.14 16 44 H 0.02 0.87 7.51 -2.39 -0.02 0.85 16 45 H 0.39 10.79 9.12 -74.06 -0.68 10.11 16 46 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -79.67 381.86 -0.17 -79.84 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.43 Total: 25.67 kcal Atomic # 6 Polarization: 22.16 SS G_CDS: 8.33 Total: 30.49 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -8.04 Total: -140.46 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.06 Total: -44.05 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -79.67 -0.17 -79.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958281379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.308 kcal (2) G-P(sol) polarization free energy of solvation -79.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds