Wall clock time and date at job start Tue Mar 31 2020 13:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47279 * 2 1 4 4 N 1.46500 * 109.46872 * 120.00492 * 2 1 3 5 5 C 1.35851 * 126.13071 * 299.97122 * 4 2 1 6 6 N 1.30176 * 108.99751 * 179.78590 * 5 4 2 7 7 C 1.35753 * 108.86883 * 0.38345 * 6 5 4 8 8 C 1.47324 * 126.23498 * 179.88521 * 7 6 5 9 9 O 1.21619 * 120.00083 * 179.68799 * 8 7 6 10 10 N 1.34777 * 120.00124 * 359.68350 * 8 7 6 11 11 C 1.46498 * 120.00152 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47330 * 180.02562 * 11 10 8 13 13 H 1.09004 * 110.91234 * 308.90615 * 12 11 10 14 14 C 1.55124 * 110.90738 * 72.97842 * 12 11 10 15 15 N 1.47422 * 104.72386 * 155.27931 * 14 12 11 16 16 C 1.36935 * 125.65052 * 155.82057 * 15 14 12 17 17 H 1.07997 * 120.00073 * 348.61994 * 16 15 14 18 18 C 1.38809 * 119.99972 * 168.62351 * 16 15 14 19 19 N 1.31629 * 120.00077 * 165.67544 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 345.67730 * 18 16 15 21 21 H 1.48504 * 109.47264 * 65.28199 * 20 18 16 22 22 H 1.48500 * 109.46981 * 185.27835 * 20 18 16 23 23 H 1.48493 * 109.47327 * 305.27898 * 20 18 16 24 24 C 1.47030 * 108.70260 * 335.55066 * 15 14 12 25 25 C 1.54323 * 107.26499 * 1.29000 * 24 15 14 26 26 H 1.09004 * 110.71967 * 140.56077 * 25 24 15 27 27 O 1.42906 * 110.72165 * 263.64735 * 25 24 15 28 28 C 1.35376 * 126.13853 * 119.99970 * 4 2 1 29 29 H 1.09005 * 109.46828 * 59.99979 * 1 2 3 30 30 H 1.08997 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47225 * 300.00297 * 1 2 3 32 32 H 1.09000 * 109.47225 * 239.99703 * 2 1 3 33 33 H 1.08998 * 109.47125 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47575 * 300.00234 * 3 2 1 35 35 H 1.09001 * 109.47150 * 60.00488 * 3 2 1 36 36 H 1.07994 * 125.49989 * 0.02562 * 5 4 2 37 37 H 0.96999 * 119.99701 * 0.02562 * 10 8 7 38 38 H 1.09003 * 109.46931 * 60.00602 * 11 10 8 39 39 H 1.08996 * 109.47523 * 300.00841 * 11 10 8 40 40 H 1.08998 * 110.49946 * 36.43212 * 14 12 11 41 41 H 1.09006 * 110.34542 * 274.04187 * 14 12 11 42 42 H 0.97001 * 119.99647 * 354.93037 * 19 18 16 43 43 H 1.08996 * 109.88034 * 120.70725 * 24 15 14 44 44 H 1.08992 * 109.88092 * 241.71928 * 24 15 14 45 45 H 0.96699 * 113.99825 * 298.55275 * 27 25 24 46 46 H 1.08001 * 126.56101 * 359.95194 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7684 -0.3366 2.4837 6 7 2.3599 -1.1815 3.2779 7 6 3.0172 -2.1027 2.5280 8 6 3.8147 -3.2318 3.0376 9 8 4.3537 -3.9957 2.2597 10 7 3.9472 -3.4181 4.3658 11 6 4.7398 -4.5411 4.8725 12 6 4.7284 -4.5243 6.4024 13 1 5.0042 -3.5407 6.7827 14 6 3.3476 -4.9706 6.9506 15 7 3.6302 -5.4872 8.3021 16 6 2.7318 -5.5589 9.3331 17 1 1.7789 -5.0568 9.2549 18 6 3.0461 -6.2769 10.4788 19 7 2.3268 -6.1224 11.5703 20 14 4.4897 -7.4623 10.4716 21 1 5.7526 -6.7033 10.2865 22 1 4.5364 -8.1933 11.7634 23 1 4.3278 -8.4327 9.3593 24 6 5.0346 -5.9189 8.3577 25 6 5.6593 -5.6242 6.9777 26 1 6.6771 -5.2496 7.0871 27 8 5.6381 -6.7914 6.1534 28 6 2.7997 -1.7960 1.2167 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.1720 0.5071 2.7976 37 1 3.5172 -2.8090 4.9862 38 1 5.7659 -4.4520 4.5155 39 1 4.3115 -5.4781 4.5166 40 1 2.9243 -5.7563 6.3249 41 1 2.6681 -4.1198 7.0041 42 1 1.6242 -5.4542 11.5975 43 1 5.5633 -5.3613 9.1307 44 1 5.0860 -6.9866 8.5701 45 1 6.1445 -7.5340 6.5101 46 1 3.1782 -2.3323 0.3591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958281380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:18 Heat of formation + Delta-G solvation = 8.639421 kcal Electronic energy + Delta-G solvation = -27046.019545 eV Core-core repulsion = 23165.885247 eV Total energy + Delta-G solvation = -3880.134298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48412 -39.40136 -38.44632 -36.44346 -35.06327 -34.63867 -32.27358 -31.50560 -30.41257 -29.53973 -28.07767 -27.98947 -25.84473 -23.77519 -23.46424 -22.37285 -20.95301 -20.78981 -19.97311 -19.54789 -17.86367 -17.77855 -16.93618 -16.39614 -15.91084 -15.78427 -15.46541 -15.00194 -14.82245 -14.40671 -14.32767 -14.16547 -13.88251 -13.60729 -13.58261 -13.31342 -13.06250 -12.89219 -12.82297 -12.63040 -12.30573 -12.07684 -11.89246 -11.88356 -11.13882 -11.06189 -10.74447 -10.51564 -10.44922 -10.14641 -10.05810 -9.93821 -9.84197 -9.17123 -8.95887 -8.94129 -8.69417 -8.66488 -7.00494 -6.28151 -3.19136 1.45750 2.24523 2.27505 3.38185 3.40836 3.50227 3.60877 3.71765 3.89832 4.21212 4.24090 4.32344 4.43221 4.46441 4.64034 4.83652 4.88251 4.92241 5.00039 5.02372 5.09026 5.14375 5.23477 5.26666 5.29552 5.37356 5.45960 5.50690 5.70563 5.79122 5.81926 5.89478 6.18567 6.19412 6.25867 6.38742 6.51282 6.59228 6.66393 6.75734 6.85922 7.50349 7.69366 7.82454 7.96132 8.36276 8.40920 9.07096 9.58455 10.25548 11.22682 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.002480 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.881052 B =11288.022045 C =12183.025109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.453 5.453 5 C 0.187 3.813 6 N -0.461 5.461 7 C -0.060 4.060 8 C 0.601 3.399 9 O -0.551 6.551 10 N -0.712 5.712 11 C 0.142 3.858 12 C -0.109 4.109 13 H 0.094 0.906 14 C 0.144 3.856 15 N -0.610 5.610 16 C -0.318 4.318 17 H 0.079 0.921 18 C -0.025 4.025 19 N -0.930 5.930 20 Si 1.072 2.928 21 H -0.289 1.289 22 H -0.302 1.302 23 H -0.297 1.297 24 C 0.082 3.918 25 C 0.101 3.899 26 H 0.067 0.933 27 O -0.558 6.558 28 C 0.032 3.968 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.207 0.793 37 H 0.409 0.591 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.045 0.955 42 H 0.261 0.739 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.377 0.623 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 15.197 -25.338 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.097 4.097 6 N -0.179 5.179 7 C -0.189 4.189 8 C 0.387 3.613 9 O -0.429 6.429 10 N -0.363 5.363 11 C 0.018 3.982 12 C -0.129 4.129 13 H 0.112 0.888 14 C 0.018 3.982 15 N -0.337 5.337 16 C -0.445 4.445 17 H 0.097 0.903 18 C -0.224 4.224 19 N -0.572 5.572 20 Si 0.907 3.093 21 H -0.216 1.216 22 H -0.230 1.230 23 H -0.226 1.226 24 C -0.043 4.043 25 C 0.041 3.959 26 H 0.085 0.915 27 O -0.363 6.363 28 C -0.107 4.107 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.224 0.776 37 H 0.244 0.756 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.224 0.776 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.969 13.980 -24.476 28.256 hybrid contribution -0.808 1.113 -1.084 1.751 sum 1.161 15.093 -25.560 29.706 Atomic orbital electron populations 1.22197 0.92777 1.03602 1.03672 1.21574 0.95814 0.94194 0.86172 1.22191 1.02371 0.93950 1.03675 1.45658 1.37769 1.21925 1.08248 1.25016 1.04025 1.01998 0.78670 1.70653 1.10713 1.03951 1.32605 1.20621 1.07355 1.00389 0.90512 1.16876 0.79387 0.82635 0.82411 1.90783 1.49092 1.46275 1.56756 1.45878 1.52626 1.31060 1.06698 1.21145 0.95439 0.89245 0.92344 1.22746 0.98121 0.98144 0.93851 0.88765 1.21665 0.93020 0.96673 0.86811 1.44765 1.06006 1.74459 1.08517 1.20199 0.98763 1.31430 0.94105 0.90304 1.25871 1.03810 1.00918 0.91782 1.70890 1.23324 1.36400 1.26585 0.83811 0.75490 0.76404 0.73619 1.21645 1.23016 1.22603 1.22745 0.87808 0.98057 0.95666 1.22728 0.97184 0.85992 0.89960 0.91539 1.86457 1.76605 1.24004 1.49256 1.22580 0.97712 0.90727 0.99703 0.90197 0.91463 0.91344 0.87860 0.91527 0.90195 0.91364 0.77628 0.75602 0.91539 0.90240 0.95140 0.93658 0.92876 0.93045 0.94860 0.77597 0.79683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 9.24 37.16 0.34 -0.18 16 2 C 0.12 0.50 3.57 -67.93 -0.24 0.26 16 3 C -0.16 -0.47 9.24 37.16 0.34 -0.13 16 4 N -0.45 -3.49 2.59 -111.25 -0.29 -3.78 16 5 C 0.19 1.68 11.53 -89.90 -1.04 0.65 16 6 N -0.46 -5.93 11.01 -11.03 -0.12 -6.05 16 7 C -0.06 -0.81 6.98 -83.09 -0.58 -1.39 16 8 C 0.60 9.65 7.81 -12.57 -0.10 9.55 16 9 O -0.55 -10.17 16.88 5.26 0.09 -10.08 16 10 N -0.71 -10.98 5.50 -61.42 -0.34 -11.32 16 11 C 0.14 2.29 4.61 -4.04 -0.02 2.27 16 12 C -0.11 -1.86 2.99 -88.36 -0.26 -2.12 16 13 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 14 C 0.14 3.04 6.65 -2.41 -0.02 3.03 16 15 N -0.61 -15.36 3.32 -169.94 -0.56 -15.92 16 16 C -0.32 -9.34 10.56 -15.06 -0.16 -9.50 16 17 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 18 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 19 N -0.93 -29.78 13.70 55.49 0.76 -29.02 16 20 Si 1.07 27.19 24.53 -169.99 -4.17 23.03 16 21 H -0.29 -6.58 5.43 56.52 0.31 -6.28 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 23 H -0.30 -7.31 6.84 56.52 0.39 -6.93 16 24 C 0.08 1.80 4.38 -3.06 -0.01 1.79 16 25 C 0.10 1.74 4.07 -24.90 -0.10 1.64 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 O -0.56 -9.22 12.27 -35.23 -0.43 -9.65 16 28 C 0.03 0.33 11.22 -16.64 -0.19 0.14 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.22 7.94 -51.93 -0.41 -0.20 16 32 H 0.10 0.31 8.07 -51.93 -0.42 -0.11 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 35 H 0.07 0.19 7.94 -51.93 -0.41 -0.22 16 36 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.41 6.03 8.19 -40.82 -0.33 5.69 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.44 7.55 -51.93 -0.39 1.05 16 40 H 0.03 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 43 H 0.05 1.15 6.78 -51.93 -0.35 0.80 16 44 H 0.03 0.77 3.73 -51.93 -0.19 0.58 16 45 H 0.38 4.74 9.10 45.56 0.41 5.16 16 46 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -37.97 372.75 -8.00 -45.97 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.42 Total: 6.06 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.12 Total: 5.16 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -0.55 Total: -66.09 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.34 Total: -19.74 kcal Atomic # 14 Polarization: 27.19 SS G_CDS: -4.17 Total: 23.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.97 -8.00 -45.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958281380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.608 kcal (2) G-P(sol) polarization free energy of solvation -37.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds