Wall clock time and date at job start Tue Mar 31 2020 13:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 N 1.46500 * 109.47283 * 119.99822 * 2 1 3 5 5 C 1.35851 * 126.13420 * 300.00477 * 4 2 1 6 6 N 1.30180 * 109.00134 * 179.75751 * 5 4 2 7 7 C 1.35754 * 108.86293 * 0.37917 * 6 5 4 8 8 C 1.47332 * 126.23055 * 179.88288 * 7 6 5 9 9 O 1.21623 * 119.99901 * 179.68865 * 8 7 6 10 10 N 1.34773 * 120.00268 * 359.69089 * 8 7 6 11 11 C 1.46494 * 120.00561 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47606 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.88411 * 57.42720 * 12 11 10 14 14 C 1.54908 * 111.00745 * 293.54908 * 12 11 10 15 15 N 1.47414 * 104.83427 * 204.87537 * 14 12 11 16 16 C 1.36941 * 125.65304 * 204.08670 * 15 14 12 17 17 H 1.08008 * 119.99381 * 6.65072 * 16 15 14 18 18 C 1.38812 * 120.00565 * 186.64665 * 16 15 14 19 19 N 1.31618 * 119.99440 * 7.38012 * 18 16 15 20 20 Si 1.86793 * 120.00104 * 187.37813 * 18 16 15 21 21 H 1.48507 * 109.47081 * 84.99136 * 20 18 16 22 22 H 1.48502 * 109.47308 * 324.99111 * 20 18 16 23 23 H 1.48499 * 109.47100 * 204.98882 * 20 18 16 24 24 C 1.47021 * 108.70498 * 24.35841 * 15 14 12 25 25 C 1.54340 * 107.26384 * 358.57942 * 24 15 14 26 26 H 1.08998 * 110.84923 * 219.67449 * 25 24 15 27 27 O 1.42902 * 110.66092 * 96.52489 * 25 24 15 28 28 C 1.35376 * 126.13745 * 119.99289 * 4 2 1 29 29 H 1.09001 * 109.46923 * 300.00188 * 1 2 3 30 30 H 1.08997 * 109.46608 * 60.00031 * 1 2 3 31 31 H 1.09002 * 109.47212 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46923 * 239.99812 * 2 1 3 33 33 H 1.09000 * 109.47099 * 300.00118 * 3 2 1 34 34 H 1.09007 * 109.47058 * 59.99599 * 3 2 1 35 35 H 1.09001 * 109.47487 * 179.97438 * 3 2 1 36 36 H 1.07994 * 125.50004 * 359.97243 * 5 4 2 37 37 H 0.97009 * 119.99695 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.46981 * 59.99760 * 11 10 8 39 39 H 1.09000 * 109.47239 * 300.00131 * 11 10 8 40 40 H 1.09003 * 110.36417 * 86.03468 * 14 12 11 41 41 H 1.09009 * 110.45681 * 323.76476 * 14 12 11 42 42 H 0.97004 * 119.99432 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88851 * 118.12853 * 24 15 14 44 44 H 1.09007 * 109.88284 * 239.29575 * 24 15 14 45 45 H 0.96699 * 114.00219 * 66.41973 * 27 25 24 46 46 H 1.08006 * 126.56313 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7682 -0.3368 2.4837 6 7 2.3594 -1.1818 3.2781 7 6 3.0169 -2.1028 2.5282 8 6 3.8144 -3.2320 3.0378 9 8 4.3535 -3.9958 2.2598 10 7 3.9464 -3.4186 4.3660 11 6 4.7389 -4.5416 4.8728 12 6 4.7279 -4.5244 6.4026 13 1 3.7078 -4.5666 6.7844 14 6 5.4743 -3.2820 6.9493 15 7 5.9195 -3.6728 8.2992 16 6 6.1966 -2.8131 9.3284 17 1 5.9923 -1.7580 9.2205 18 6 6.7401 -3.2974 10.5103 19 7 7.1238 -4.5538 10.5918 20 14 6.9268 -2.1662 11.9850 21 1 5.6540 -2.1351 12.7493 22 1 7.2579 -0.7957 11.5188 23 1 8.0170 -2.6686 12.8592 24 6 6.0230 -5.1383 8.3556 25 6 5.5857 -5.6817 6.9788 26 1 4.9879 -6.5862 7.0908 27 8 6.7233 -5.9290 6.1500 28 6 2.7998 -1.7958 1.2168 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.1718 0.5071 2.7976 37 1 3.5160 -2.8096 4.9865 38 1 5.7650 -4.4524 4.5161 39 1 4.3106 -5.4786 4.5166 40 1 4.7993 -2.4279 7.0048 41 1 6.3327 -3.0458 6.3202 42 1 7.5039 -4.8922 11.4176 43 1 7.0530 -5.4297 8.5613 44 1 5.3636 -5.5269 9.1318 45 1 7.2926 -6.6438 6.4664 46 1 3.1791 -2.3318 0.3592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958281381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:21 Heat of formation + Delta-G solvation = -1.827961 kcal Electronic energy + Delta-G solvation = -26969.327896 eV Core-core repulsion = 23088.739698 eV Total energy + Delta-G solvation = -3880.588198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42940 -39.23813 -38.08239 -36.39724 -34.79644 -34.41335 -32.08761 -31.40993 -30.08867 -29.23271 -27.95736 -27.62024 -25.53374 -24.02389 -23.43917 -22.42870 -20.76068 -20.39116 -19.80343 -19.35639 -17.79927 -17.24660 -16.71079 -16.07909 -15.84484 -15.66676 -14.96051 -14.78886 -14.73714 -14.32636 -14.11596 -13.99795 -13.67737 -13.59247 -13.47838 -13.12993 -12.89250 -12.78769 -12.52408 -12.50733 -12.03691 -11.85116 -11.73949 -11.37365 -11.12899 -10.77399 -10.53231 -10.41061 -10.34189 -10.12281 -10.00576 -9.96041 -9.76346 -9.65619 -9.11592 -8.87757 -8.59683 -8.57214 -6.78154 -5.67833 -3.02193 1.51730 2.29494 2.33553 3.43186 3.47840 3.49713 3.51902 3.68629 3.93540 4.24708 4.29971 4.36457 4.47537 4.52587 4.80457 4.86636 4.96868 5.05353 5.07342 5.12748 5.24102 5.32551 5.40298 5.43334 5.49070 5.52993 5.63892 5.69044 5.86829 6.01969 6.16331 6.18318 6.29800 6.49484 6.51299 6.67734 6.76897 6.82955 7.01890 7.34740 7.57446 7.62700 7.79797 7.92208 8.27371 8.32895 8.50553 9.23944 9.85429 10.51987 11.43036 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.002515 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.496515 B =11128.696565 C =12402.812852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.165 4.165 4 N -0.454 5.454 5 C 0.186 3.814 6 N -0.460 5.460 7 C -0.058 4.058 8 C 0.600 3.400 9 O -0.552 6.552 10 N -0.711 5.711 11 C 0.141 3.859 12 C -0.109 4.109 13 H 0.088 0.912 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.148 3.852 25 C 0.084 3.916 26 H 0.056 0.944 27 O -0.563 6.563 28 C 0.030 3.970 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.207 0.793 37 H 0.408 0.592 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.025 0.975 42 H 0.252 0.748 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.375 0.625 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 7.503 -22.305 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.098 4.098 6 N -0.179 5.179 7 C -0.187 4.187 8 C 0.385 3.615 9 O -0.431 6.431 10 N -0.361 5.361 11 C 0.017 3.983 12 C -0.128 4.128 13 H 0.106 0.894 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.353 4.353 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.218 1.218 24 C 0.023 3.977 25 C 0.024 3.976 26 H 0.074 0.926 27 O -0.368 6.368 28 C -0.108 4.108 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.223 0.777 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.222 0.778 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.792 7.502 -22.190 27.183 hybrid contribution 0.098 0.455 0.703 0.844 sum -13.694 7.958 -21.487 26.693 Atomic orbital electron populations 1.22192 0.92850 1.03498 1.03637 1.21566 0.95734 0.94232 0.86210 1.22196 1.02474 0.93931 1.03637 1.45649 1.37842 1.21939 1.08217 1.25011 1.04081 1.02025 0.78675 1.70661 1.10669 1.03951 1.32582 1.20652 1.07219 1.00374 0.90491 1.16885 0.79423 0.82653 0.82498 1.90780 1.49096 1.46402 1.56784 1.45895 1.52376 1.31193 1.06593 1.21180 0.96218 0.88029 0.92842 1.22655 0.99229 0.97640 0.93304 0.89362 1.21565 0.95407 0.93673 0.87529 1.44389 1.79102 1.01905 1.07374 1.19075 1.34685 0.90068 0.91450 0.90412 1.24804 1.00697 0.96669 0.98511 1.69931 1.47230 1.13746 1.26228 0.86117 0.77262 0.79649 0.82636 1.21609 1.20729 1.21769 1.21901 1.01091 0.84343 0.90364 1.23077 0.86588 0.95645 0.92269 0.92622 1.86412 1.38920 1.58998 1.52490 1.22576 0.97756 0.90771 0.99719 0.91376 0.90231 0.91530 0.87881 0.90231 0.91360 0.91458 0.77664 0.75634 0.90176 0.91881 0.94369 0.95700 0.93814 0.91551 0.94607 0.77838 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 9.24 37.16 0.34 -0.17 16 2 C 0.13 0.53 3.57 -67.93 -0.24 0.29 16 3 C -0.16 -0.55 9.24 37.16 0.34 -0.21 16 4 N -0.45 -3.64 2.59 -111.24 -0.29 -3.92 16 5 C 0.19 1.73 11.53 -89.90 -1.04 0.69 16 6 N -0.46 -6.10 11.01 -11.03 -0.12 -6.22 16 7 C -0.06 -0.82 6.98 -83.09 -0.58 -1.40 16 8 C 0.60 10.04 7.81 -12.56 -0.10 9.94 16 9 O -0.55 -10.58 16.88 5.26 0.09 -10.49 16 10 N -0.71 -11.57 5.40 -61.42 -0.33 -11.90 16 11 C 0.14 2.43 4.74 -4.05 -0.02 2.41 16 12 C -0.11 -2.00 3.03 -88.48 -0.27 -2.27 16 13 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 14 C 0.14 3.16 6.40 -2.54 -0.02 3.15 16 15 N -0.60 -15.79 3.39 -170.06 -0.58 -16.37 16 16 C -0.22 -6.41 10.26 -15.06 -0.15 -6.56 16 17 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 18 C -0.01 -0.31 5.45 -17.43 -0.09 -0.41 16 19 N -0.92 -27.39 10.48 55.49 0.58 -26.81 16 20 Si 0.91 22.49 29.56 -169.99 -5.02 17.47 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C 0.15 3.61 5.19 -3.06 -0.02 3.59 16 25 C 0.08 1.61 4.09 -24.89 -0.10 1.51 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 O -0.56 -10.37 12.09 -35.23 -0.43 -10.80 16 28 C 0.03 0.33 11.22 -16.64 -0.19 0.14 16 29 H 0.07 0.21 7.94 -51.93 -0.41 -0.20 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.33 8.07 -51.93 -0.42 -0.08 16 33 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.07 0.23 7.94 -51.93 -0.41 -0.19 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.21 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.41 6.37 8.05 -40.82 -0.33 6.04 16 38 H 0.08 1.56 7.43 -51.93 -0.39 1.17 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.59 8.01 -51.92 -0.42 0.17 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 43 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 44 H 0.04 0.94 7.92 -51.93 -0.41 0.53 16 45 H 0.37 5.49 9.12 45.56 0.42 5.91 16 46 H 0.19 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -36.24 380.25 -9.00 -45.24 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.50 Total: 7.37 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -2.13 Total: 10.71 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -0.74 Total: -65.22 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.34 Total: -21.29 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.24 -9.00 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958281381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.413 kcal (2) G-P(sol) polarization free energy of solvation -36.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds