Wall clock time and date at job start Tue Mar 31 2020 13:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46859 * 2 1 4 4 N 1.46498 * 109.47265 * 120.00070 * 2 1 3 5 5 C 1.35030 * 124.88756 * 274.71809 * 4 2 1 6 6 C 1.35363 * 107.22817 * 180.26735 * 5 4 2 7 7 C 1.41496 * 105.50762 * 0.02562 * 6 5 4 8 8 C 1.47706 * 126.52031 * 180.02562 * 7 6 5 9 9 O 1.21565 * 119.99936 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00100 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00114 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47180 * 179.97438 * 11 10 8 13 13 H 1.08992 * 110.64001 * 308.14642 * 12 11 10 14 14 C 1.54324 * 110.71774 * 71.48411 * 12 11 10 15 15 N 1.47021 * 107.27058 * 140.55664 * 14 12 11 16 16 C 1.36941 * 125.64727 * 181.09060 * 15 14 12 17 17 H 1.08005 * 119.99687 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00032 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47129 * 120.00014 * 20 18 16 23 23 H 1.48493 * 109.47159 * 240.00345 * 20 18 16 24 24 C 1.47417 * 108.70590 * 1.05631 * 15 14 12 25 25 C 1.54907 * 104.83374 * 335.87423 * 24 15 14 26 26 H 1.09010 * 111.03570 * 278.92195 * 25 24 15 27 27 O 1.42894 * 111.00901 * 155.08126 * 25 24 15 28 28 N 1.28474 * 124.88160 * 95.02833 * 4 2 1 29 29 H 1.08998 * 109.47391 * 299.99387 * 1 2 3 30 30 H 1.09001 * 109.47612 * 59.99686 * 1 2 3 31 31 H 1.09010 * 109.47061 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47125 * 240.00842 * 2 1 3 33 33 H 1.08999 * 109.46972 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47208 * 299.99807 * 3 2 1 35 35 H 1.08998 * 109.46619 * 60.00139 * 3 2 1 36 36 H 1.08007 * 126.38413 * 0.25357 * 5 4 2 37 37 H 1.08001 * 127.24520 * 180.02562 * 6 5 4 38 38 H 0.97006 * 119.99941 * 0.02562 * 10 8 7 39 39 H 1.08994 * 109.47503 * 300.00532 * 11 10 8 40 40 H 1.09003 * 109.47022 * 60.00325 * 11 10 8 41 41 H 1.09003 * 109.87793 * 259.97439 * 14 12 11 42 42 H 1.09000 * 109.88580 * 21.13430 * 14 12 11 43 43 H 0.97001 * 119.99814 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.36869 * 217.03486 * 24 15 14 45 45 H 1.08999 * 110.46285 * 94.75817 * 24 15 14 46 46 H 0.96703 * 113.99759 * 67.80413 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1899 -0.1139 2.4050 6 6 2.6574 -1.0693 3.2422 7 6 2.7532 -2.2442 2.4596 8 6 3.2154 -3.5702 2.9177 9 8 3.5612 -3.7278 4.0725 10 7 3.2547 -4.6052 2.0553 11 6 3.7136 -5.9201 2.5095 12 6 3.6605 -6.9096 1.3436 13 1 2.6775 -6.8962 0.8728 14 6 4.7676 -6.6001 0.3140 15 7 5.3034 -7.8877 -0.1511 16 6 6.3184 -8.0498 -1.0560 17 1 6.7961 -7.1849 -1.4922 18 6 6.7333 -9.3255 -1.4125 19 7 6.1508 -10.3794 -0.8813 20 14 8.1185 -9.5465 -2.6463 21 1 8.6020 -8.2148 -3.0914 22 1 9.2347 -10.2904 -2.0093 23 1 7.6201 -10.3098 -3.8185 24 6 4.5676 -8.9756 0.5185 25 6 4.0208 -8.3411 1.8216 26 1 4.7883 -8.3131 2.5952 27 8 2.8593 -9.0351 2.2811 28 7 2.3503 -1.9308 1.2444 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.9913 0.9175 2.6568 37 1 2.9051 -0.9581 4.2876 38 1 2.9798 -4.4791 1.1336 39 1 4.7380 -5.8417 2.8735 40 1 3.0681 -6.2723 3.3141 41 1 4.3479 -6.0477 -0.5268 42 1 5.5594 -6.0174 0.7848 43 1 6.4405 -11.2709 -1.1307 44 1 5.2402 -9.8011 0.7517 45 1 3.7460 -9.3222 -0.1084 46 1 3.0351 -9.9344 2.5900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958450185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:48 Heat of formation + Delta-G solvation = 18.590587 kcal Electronic energy + Delta-G solvation = -27027.094743 eV Core-core repulsion = 23147.391960 eV Total energy + Delta-G solvation = -3879.702783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.85031 -39.37686 -38.07991 -36.18023 -35.10235 -34.56544 -32.25649 -31.09382 -30.74750 -29.44616 -27.90428 -27.51073 -25.70528 -24.40680 -23.28504 -22.29988 -20.71295 -20.41505 -19.92342 -19.51296 -17.97522 -17.04602 -16.96066 -16.52445 -16.20254 -15.59575 -15.22878 -14.91274 -14.80137 -14.17060 -13.99930 -13.97530 -13.67257 -13.45130 -13.16546 -12.97650 -12.85013 -12.78637 -12.67047 -12.34474 -11.94878 -11.90106 -11.71728 -11.50517 -11.22575 -11.04748 -10.91677 -10.79635 -10.57750 -10.12968 -10.01433 -9.84618 -9.62038 -9.41758 -9.22423 -9.12203 -8.81244 -8.69159 -6.88250 -5.69469 -3.11692 1.53557 2.02078 2.16943 3.32372 3.38245 3.43715 3.46286 3.51517 3.93178 4.26694 4.43060 4.46999 4.52330 4.54372 4.76168 4.89027 4.96345 5.07594 5.10045 5.22862 5.24881 5.30500 5.41444 5.46822 5.55691 5.56853 5.58192 5.64164 5.72422 5.99332 6.09095 6.11783 6.24850 6.28526 6.43722 6.55800 6.59111 6.68365 6.87463 7.38726 7.57068 7.57330 7.76743 7.86448 8.19623 8.31720 8.34929 9.17139 9.77897 10.41474 11.34664 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002694 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.188882 B =10392.302893 C =11532.190679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.277 5.277 5 C -0.021 4.021 6 C -0.180 4.180 7 C -0.015 4.015 8 C 0.602 3.398 9 O -0.538 6.538 10 N -0.711 5.711 11 C 0.133 3.867 12 C -0.104 4.104 13 H 0.086 0.914 14 C 0.141 3.859 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.129 3.871 25 C 0.081 3.919 26 H 0.061 0.939 27 O -0.569 6.569 28 N -0.259 5.259 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.407 0.593 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.252 0.748 44 H 0.109 0.891 45 H 0.022 0.978 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 21.754 4.226 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.066 5.066 5 C -0.163 4.163 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.386 3.614 9 O -0.414 6.414 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.123 4.123 13 H 0.104 0.896 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.003 3.997 25 C 0.021 3.979 26 H 0.079 0.921 27 O -0.374 6.374 28 N -0.095 5.095 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.242 0.758 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.127 0.873 45 H 0.040 0.960 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.603 21.632 3.613 24.812 hybrid contribution 0.883 -0.163 -0.276 0.939 sum -10.720 21.470 3.337 24.228 Atomic orbital electron populations 1.22229 0.92809 1.03829 1.03456 1.21609 0.95562 0.93363 0.85527 1.22198 1.02633 0.93456 1.03962 1.45749 1.45339 1.05960 1.09569 1.22728 1.07126 1.00796 0.85675 1.21766 1.06567 0.91089 1.01334 1.21990 1.08292 0.96271 0.90956 1.16883 0.77618 0.81872 0.85040 1.90781 1.49108 1.83637 1.17851 1.45903 1.66277 1.09839 1.14132 1.21476 1.00226 0.80535 0.96801 1.22399 1.00659 0.93689 0.95601 0.89556 1.21380 0.92948 0.90237 0.93907 1.44334 1.39397 0.99585 1.49557 1.19147 1.07951 0.92592 1.15301 0.90242 1.24801 1.00024 0.95313 1.00581 1.69776 1.43671 0.97363 1.46386 0.85968 0.81310 0.77627 0.80420 1.20483 1.21690 1.21727 1.22531 0.95669 0.92987 0.88501 1.23315 0.86168 0.91058 0.97400 0.92076 1.86372 1.34297 1.31146 1.85546 1.73529 1.15934 0.97853 1.22137 0.91631 0.89983 0.91228 0.87089 0.91162 0.89583 0.91247 0.80444 0.82135 0.75796 0.91062 0.91002 0.95682 0.95248 0.93710 0.87337 0.96027 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.52 37.16 0.35 -0.46 16 2 C 0.14 0.85 3.80 -67.93 -0.26 0.59 16 3 C -0.16 -0.60 8.80 37.16 0.33 -0.27 16 4 N -0.28 -2.67 3.22 -54.83 -0.18 -2.85 16 5 C -0.02 -0.18 10.54 -17.17 -0.18 -0.36 16 6 C -0.18 -2.10 10.81 -39.37 -0.43 -2.52 16 7 C -0.01 -0.21 7.13 -82.77 -0.59 -0.80 16 8 C 0.60 9.88 7.82 -12.39 -0.10 9.79 16 9 O -0.54 -10.27 16.93 5.31 0.09 -10.18 16 10 N -0.71 -11.05 5.47 -61.30 -0.34 -11.39 16 11 C 0.13 2.21 5.02 -4.04 -0.02 2.19 16 12 C -0.10 -1.91 2.70 -88.78 -0.24 -2.15 16 13 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.14 2.97 6.75 -3.06 -0.02 2.95 16 15 N -0.60 -15.47 3.39 -170.08 -0.58 -16.04 16 16 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.72 10.09 55.49 0.56 -26.17 16 20 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.13 3.12 5.62 -2.53 -0.01 3.11 16 25 C 0.08 1.58 3.88 -24.58 -0.10 1.49 16 26 H 0.06 1.17 8.05 -51.92 -0.42 0.75 16 27 O -0.57 -10.10 13.47 -35.23 -0.47 -10.57 16 28 N -0.26 -3.34 11.67 33.42 0.39 -2.95 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.19 7.05 -51.93 -0.37 -0.18 16 36 H 0.18 0.87 7.16 -52.48 -0.38 0.49 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.41 5.89 8.20 -40.82 -0.33 5.55 16 39 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.62 7.68 -51.93 -0.40 0.22 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.38 5.20 9.12 45.56 0.42 5.62 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -34.80 379.93 -7.73 -42.52 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.39 Total: 8.11 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.51 Total: 6.77 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.14 Total: -59.40 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.38 Total: -20.76 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.80 -7.73 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958450185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.113 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds