Wall clock time and date at job start Tue Mar 31 2020 13:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46859 * 2 1 4 4 N 1.46498 * 109.47265 * 120.00070 * 2 1 3 5 5 C 1.35030 * 124.88756 * 274.71809 * 4 2 1 6 6 C 1.35363 * 107.22817 * 180.26735 * 5 4 2 7 7 C 1.41496 * 105.50762 * 0.02562 * 6 5 4 8 8 C 1.47706 * 126.52031 * 180.02562 * 7 6 5 9 9 O 1.21565 * 119.99936 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00100 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00114 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47180 * 179.97438 * 11 10 8 13 13 H 1.08992 * 110.64001 * 308.14642 * 12 11 10 14 14 C 1.54324 * 110.71774 * 71.48411 * 12 11 10 15 15 N 1.47021 * 107.27058 * 140.55664 * 14 12 11 16 16 C 1.36941 * 125.64727 * 181.09060 * 15 14 12 17 17 H 1.08005 * 119.99687 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00032 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47129 * 120.00014 * 20 18 16 23 23 H 1.48493 * 109.47159 * 240.00345 * 20 18 16 24 24 C 1.47417 * 108.70590 * 1.05631 * 15 14 12 25 25 C 1.54907 * 104.83374 * 335.87423 * 24 15 14 26 26 H 1.09010 * 111.03570 * 278.92195 * 25 24 15 27 27 O 1.42894 * 111.00901 * 155.08126 * 25 24 15 28 28 N 1.28474 * 124.88160 * 95.02833 * 4 2 1 29 29 H 1.08998 * 109.47391 * 299.99387 * 1 2 3 30 30 H 1.09001 * 109.47612 * 59.99686 * 1 2 3 31 31 H 1.09010 * 109.47061 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47125 * 240.00842 * 2 1 3 33 33 H 1.08999 * 109.46972 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47208 * 299.99807 * 3 2 1 35 35 H 1.08998 * 109.46619 * 60.00139 * 3 2 1 36 36 H 1.08007 * 126.38413 * 0.25357 * 5 4 2 37 37 H 1.08001 * 127.24520 * 180.02562 * 6 5 4 38 38 H 0.97006 * 119.99941 * 0.02562 * 10 8 7 39 39 H 1.08994 * 109.47503 * 300.00532 * 11 10 8 40 40 H 1.09003 * 109.47022 * 60.00325 * 11 10 8 41 41 H 1.09003 * 109.87793 * 259.97439 * 14 12 11 42 42 H 1.09000 * 109.88580 * 21.13430 * 14 12 11 43 43 H 0.97001 * 119.99814 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.36869 * 217.03486 * 24 15 14 45 45 H 1.08999 * 110.46285 * 94.75817 * 24 15 14 46 46 H 0.96703 * 113.99759 * 67.80413 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1899 -0.1139 2.4050 6 6 2.6574 -1.0693 3.2422 7 6 2.7532 -2.2442 2.4596 8 6 3.2154 -3.5702 2.9177 9 8 3.5612 -3.7278 4.0725 10 7 3.2547 -4.6052 2.0553 11 6 3.7136 -5.9201 2.5095 12 6 3.6605 -6.9096 1.3436 13 1 2.6775 -6.8962 0.8728 14 6 4.7676 -6.6001 0.3140 15 7 5.3034 -7.8877 -0.1511 16 6 6.3184 -8.0498 -1.0560 17 1 6.7961 -7.1849 -1.4922 18 6 6.7333 -9.3255 -1.4125 19 7 6.1508 -10.3794 -0.8813 20 14 8.1185 -9.5465 -2.6463 21 1 8.6020 -8.2148 -3.0914 22 1 9.2347 -10.2904 -2.0093 23 1 7.6201 -10.3098 -3.8185 24 6 4.5676 -8.9756 0.5185 25 6 4.0208 -8.3411 1.8216 26 1 4.7883 -8.3131 2.5952 27 8 2.8593 -9.0351 2.2811 28 7 2.3503 -1.9308 1.2444 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.9913 0.9175 2.6568 37 1 2.9051 -0.9581 4.2876 38 1 2.9798 -4.4791 1.1336 39 1 4.7380 -5.8417 2.8735 40 1 3.0681 -6.2723 3.3141 41 1 4.3479 -6.0477 -0.5268 42 1 5.5594 -6.0174 0.7848 43 1 6.4405 -11.2709 -1.1307 44 1 5.2402 -9.8011 0.7517 45 1 3.7460 -9.3222 -0.1084 46 1 3.0351 -9.9344 2.5900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958450185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:47 Heat of formation + Delta-G solvation = -8.118269 kcal Electronic energy + Delta-G solvation = -27028.252926 eV Core-core repulsion = 23147.391960 eV Total energy + Delta-G solvation = -3880.860966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.67350 -40.73240 -39.68067 -36.73370 -36.66337 -36.13767 -34.07660 -31.94818 -31.88621 -30.88118 -29.28562 -28.21935 -27.38052 -25.82271 -24.41217 -23.30882 -22.30978 -21.60031 -21.18717 -20.71113 -19.06215 -18.78176 -18.28551 -17.68899 -17.14614 -17.00918 -16.80831 -16.28340 -15.72342 -15.56735 -15.41916 -15.00192 -14.77080 -14.70260 -14.36780 -14.15536 -13.93582 -13.82239 -13.67077 -13.28559 -13.25128 -13.11984 -13.05148 -12.79200 -12.43206 -12.35170 -12.30640 -12.13538 -11.92892 -11.89958 -11.85540 -11.52276 -11.21662 -10.83123 -10.75428 -10.35572 -10.14400 -9.96285 -8.94486 -7.81152 -5.26758 0.52374 1.21208 1.46626 1.47408 1.49423 1.57947 2.12438 2.35972 2.46525 3.18378 3.29121 3.31813 3.57830 3.68383 3.76878 3.87957 3.89999 3.94118 4.06988 4.08150 4.23604 4.41307 4.44740 4.58341 4.65066 4.66799 4.69691 4.77753 4.78508 4.83407 4.86671 4.88958 4.93836 5.18086 5.21087 5.23516 5.31038 5.39226 5.41645 5.46604 5.72112 5.92165 6.23159 6.39313 6.88740 6.91176 7.06286 7.12652 7.71694 8.34810 9.21037 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002694 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.188882 B =10392.302893 C =11532.190679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.159 4.159 4 N -0.270 5.270 5 C 0.002 3.998 6 C -0.201 4.201 7 C -0.047 4.047 8 C 0.600 3.400 9 O -0.572 6.572 10 N -0.706 5.706 11 C 0.146 3.854 12 C -0.088 4.088 13 H 0.090 0.910 14 C 0.141 3.859 15 N -0.623 5.623 16 C -0.240 4.240 17 H 0.083 0.917 18 C -0.066 4.066 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.292 1.292 24 C 0.134 3.866 25 C 0.098 3.902 26 H 0.070 0.930 27 O -0.568 6.568 28 N -0.278 5.278 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.223 0.777 37 H 0.165 0.835 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.249 0.751 44 H 0.081 0.919 45 H -0.008 1.008 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 24.576 3.876 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.217 4.217 4 N -0.059 5.059 5 C -0.141 4.141 6 C -0.229 4.229 7 C -0.205 4.205 8 C 0.387 3.613 9 O -0.450 6.450 10 N -0.357 5.357 11 C 0.022 3.978 12 C -0.107 4.107 13 H 0.108 0.892 14 C 0.016 3.984 15 N -0.350 5.350 16 C -0.369 4.369 17 H 0.101 0.899 18 C -0.258 4.258 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.191 1.191 22 H -0.217 1.217 23 H -0.219 1.219 24 C 0.008 3.992 25 C 0.037 3.963 26 H 0.088 0.912 27 O -0.375 6.375 28 N -0.115 5.115 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.240 0.760 37 H 0.182 0.818 38 H 0.248 0.752 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.010 0.990 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.345 24.466 3.253 27.596 hybrid contribution 1.032 -0.969 -0.228 1.434 sum -11.313 23.497 3.025 26.253 Atomic orbital electron populations 1.22215 0.91679 1.02859 1.05046 1.22015 0.96420 0.94503 0.84010 1.22215 1.02001 0.91611 1.05840 1.46230 1.43672 1.05116 1.10931 1.23309 1.04427 1.01950 0.84425 1.21992 1.07832 0.91044 1.02045 1.21797 1.10577 0.95909 0.92265 1.17218 0.76860 0.82717 0.84554 1.90745 1.50764 1.84377 1.19157 1.45821 1.66084 1.09393 1.14387 1.21234 0.99994 0.80702 0.95846 1.22219 0.99703 0.93405 0.95350 0.89195 1.21487 0.93673 0.88552 0.94692 1.44616 1.39339 1.01538 1.49545 1.19504 1.08625 0.92920 1.15832 0.89943 1.25653 1.02486 0.95105 1.02598 1.70009 1.44885 0.97468 1.47464 0.84945 0.78259 0.77835 0.77881 1.19126 1.21652 1.21867 1.22319 0.94063 0.92594 0.90177 1.22983 0.86844 0.91243 0.95230 0.91179 1.86346 1.33347 1.32587 1.85255 1.73463 1.16625 0.99741 1.21706 0.90859 0.87579 0.93444 0.87662 0.92111 0.87457 0.89666 0.76048 0.81780 0.75155 0.91685 0.90768 0.95097 0.95048 0.94156 0.90087 0.98962 0.75572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.52 71.98 0.69 -0.48 16 2 C 0.13 1.26 3.80 44.99 0.17 1.43 16 3 C -0.16 -0.59 8.80 71.98 0.63 0.04 16 4 N -0.27 -4.70 3.22 -327.38 -1.05 -5.76 16 5 C 0.00 0.03 10.54 83.54 0.88 0.91 16 6 C -0.20 -4.50 10.81 22.41 0.24 -4.26 16 7 C -0.05 -1.34 7.13 42.45 0.30 -1.03 16 8 C 0.60 19.94 7.82 86.75 0.68 20.62 16 9 O -0.57 -22.21 16.93 -3.92 -0.07 -22.27 16 10 N -0.71 -21.94 5.47 -466.12 -2.55 -24.49 16 11 C 0.15 4.79 5.02 86.38 0.43 5.23 16 12 C -0.09 -3.17 2.70 -9.60 -0.03 -3.19 16 13 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 14 C 0.14 5.94 6.75 86.73 0.59 6.52 16 15 N -0.62 -32.55 3.39 -692.00 -2.35 -34.90 16 16 C -0.24 -13.56 10.27 84.03 0.86 -12.69 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 19 N -0.95 -56.24 10.09 21.65 0.22 -56.02 16 20 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 C 0.13 6.68 5.62 86.86 0.49 7.17 16 25 C 0.10 3.80 3.88 31.99 0.12 3.92 16 26 H 0.07 2.63 8.05 -2.38 -0.02 2.62 16 27 O -0.57 -19.63 13.47 -148.98 -2.01 -21.64 16 28 N -0.28 -7.01 11.67 -48.18 -0.56 -7.57 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.08 0.07 7.05 -2.39 -0.02 0.05 16 36 H 0.22 1.14 7.16 -2.91 -0.02 1.12 16 37 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.41 11.89 8.20 -92.70 -0.76 11.13 16 39 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 44 H 0.08 4.49 5.87 -2.39 -0.01 4.48 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.39 10.50 9.12 -74.06 -0.68 9.82 16 Total: -1.00 -77.11 379.93 -0.25 -77.35 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -0.43 Total: 26.70 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 6.53 Total: 20.91 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -6.29 Total: -128.74 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -2.07 Total: -43.91 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.11 -0.25 -77.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958450185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.234 kcal (2) G-P(sol) polarization free energy of solvation -77.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds