Wall clock time and date at job start Tue Mar 31 2020 13:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47248 * 2 1 4 4 N 1.46501 * 109.46726 * 120.00001 * 2 1 3 5 5 C 1.35030 * 124.88434 * 274.97316 * 4 2 1 6 6 C 1.35362 * 107.23007 * 179.76666 * 5 4 2 7 7 C 1.41505 * 105.50106 * 0.35778 * 6 5 4 8 8 C 1.47708 * 126.51688 * 179.90335 * 7 6 5 9 9 O 1.21578 * 119.99817 * 359.71126 * 8 7 6 10 10 N 1.34776 * 120.00256 * 179.71557 * 8 7 6 11 11 C 1.46494 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.09008 * 110.88445 * 57.42402 * 12 11 10 14 14 C 1.54908 * 111.00368 * 293.54522 * 12 11 10 15 15 N 1.47425 * 104.92961 * 204.85960 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47294 * 89.99594 * 20 18 16 22 22 H 1.48503 * 109.46797 * 209.99511 * 20 18 16 23 23 H 1.48500 * 109.47035 * 329.99310 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08994 * 110.87038 * 96.25177 * 25 24 15 27 27 O 1.42903 * 110.72138 * 219.45307 * 25 24 15 28 28 N 1.28464 * 124.88683 * 94.98068 * 4 2 1 29 29 H 1.09001 * 109.47704 * 300.00446 * 1 2 3 30 30 H 1.09006 * 109.46658 * 60.00509 * 1 2 3 31 31 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47434 * 240.00019 * 2 1 3 33 33 H 1.09002 * 109.46963 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46838 * 299.99853 * 3 2 1 35 35 H 1.08999 * 109.46888 * 59.99684 * 3 2 1 36 36 H 1.08003 * 126.38797 * 0.03613 * 5 4 2 37 37 H 1.08004 * 127.24958 * 180.24639 * 6 5 4 38 38 H 0.97004 * 119.99840 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.47369 * 59.99227 * 11 10 8 40 40 H 1.09004 * 109.47192 * 299.99245 * 11 10 8 41 41 H 1.09002 * 110.36632 * 323.75356 * 14 12 11 42 42 H 1.08995 * 110.36781 * 85.96593 * 14 12 11 43 43 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 45 45 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 46 46 H 0.96696 * 113.99847 * 293.52357 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1850 -0.1150 2.4062 6 6 2.6435 -1.0726 3.2460 7 6 2.7464 -2.2458 2.4615 8 6 3.2056 -3.5726 2.9205 9 8 3.5465 -3.7313 4.0767 10 7 3.2466 -4.6072 2.0577 11 6 3.7014 -5.9231 2.5131 12 6 3.6513 -6.9119 1.3465 13 1 4.2580 -6.5596 0.5122 14 6 2.1906 -7.1708 0.9005 15 7 2.2175 -8.5011 0.2658 16 6 1.3248 -8.9590 -0.6663 17 1 0.5143 -8.3251 -0.9946 18 6 1.4610 -10.2379 -1.1883 19 7 2.4485 -11.0105 -0.7878 20 14 0.2437 -10.8621 -2.4603 21 1 0.7322 -10.5231 -3.8210 22 1 0.1093 -12.3357 -2.3354 23 1 -1.0781 -10.2236 -2.2355 24 6 3.3644 -9.2535 0.8024 25 6 4.0948 -8.3283 1.7986 26 1 3.7714 -8.5258 2.8205 27 8 5.5112 -8.4763 1.6809 28 7 2.3493 -1.9309 1.2449 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.9854 0.9160 2.6583 37 1 2.8824 -0.9637 4.2936 38 1 2.9743 -4.4805 1.1354 39 1 3.0522 -6.2746 3.3149 40 1 4.7246 -5.8467 2.8812 41 1 1.5255 -7.1758 1.7641 42 1 1.8735 -6.4144 0.1827 43 1 2.5440 -11.9041 -1.1528 44 1 4.0380 -9.5301 -0.0088 45 1 3.0154 -10.1493 1.3159 46 1 5.8397 -9.3447 1.9512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958450186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:51 Heat of formation + Delta-G solvation = 17.421237 kcal Electronic energy + Delta-G solvation = -27080.801597 eV Core-core repulsion = 23201.048107 eV Total energy + Delta-G solvation = -3879.753490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.84387 -39.37466 -38.08852 -36.16638 -35.10421 -34.53693 -32.21751 -31.08656 -30.74021 -29.43588 -27.88479 -27.52599 -25.70370 -24.39778 -23.28358 -22.30678 -20.68157 -20.37190 -19.99285 -19.55599 -17.97814 -17.04244 -16.84826 -16.51925 -16.19054 -15.64532 -15.11176 -15.01955 -14.72625 -14.19441 -14.11129 -13.91480 -13.68400 -13.44346 -13.19949 -13.00075 -12.83624 -12.68842 -12.60689 -12.37786 -11.98687 -11.89822 -11.69845 -11.42383 -11.19546 -11.03075 -10.90949 -10.80545 -10.55527 -10.14465 -10.00654 -9.78979 -9.74061 -9.41124 -9.21939 -9.17972 -8.81465 -8.64161 -6.87393 -5.73749 -3.07760 1.54326 2.02461 2.18068 3.32364 3.39181 3.43907 3.46024 3.51503 3.94518 4.28379 4.45599 4.48449 4.53259 4.55204 4.77966 4.90665 4.97881 5.08300 5.10450 5.22121 5.25933 5.30397 5.42146 5.48173 5.54104 5.57547 5.60972 5.64576 5.73042 5.91168 6.07489 6.09725 6.25861 6.28058 6.42064 6.53018 6.58959 6.64743 6.88197 7.41675 7.51638 7.57578 7.76562 7.87157 8.20995 8.23608 8.34779 9.17716 9.78499 10.43609 11.38184 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.002912 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.817763 B = 9614.194763 C =11382.766817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.277 5.277 5 C -0.021 4.021 6 C -0.180 4.180 7 C -0.015 4.015 8 C 0.602 3.398 9 O -0.539 6.539 10 N -0.710 5.710 11 C 0.134 3.866 12 C -0.107 4.107 13 H 0.089 0.911 14 C 0.141 3.859 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.152 3.848 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.566 6.566 28 N -0.258 5.258 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.408 0.592 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.024 0.976 42 H 0.043 0.957 43 H 0.253 0.747 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 23.979 3.902 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.222 4.222 4 N -0.066 5.066 5 C -0.163 4.163 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.386 3.614 9 O -0.415 6.415 10 N -0.361 5.361 11 C 0.010 3.990 12 C -0.127 4.127 13 H 0.108 0.892 14 C 0.015 3.985 15 N -0.330 5.330 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.027 3.973 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.371 6.371 28 N -0.094 5.094 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.195 0.805 37 H 0.179 0.821 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.269 23.855 3.223 24.073 hybrid contribution -0.672 -0.550 -0.184 0.888 sum -0.941 23.306 3.040 23.522 Atomic orbital electron populations 1.22236 0.92744 1.03965 1.03452 1.21612 0.95631 0.93306 0.85499 1.22196 1.02540 0.93497 1.03979 1.45755 1.45334 1.05944 1.09555 1.22727 1.07213 1.00798 0.85607 1.21763 1.06705 0.91072 1.01234 1.21984 1.08416 0.96260 0.90911 1.16884 0.77568 0.81887 0.85035 1.90781 1.49283 1.83697 1.17726 1.45891 1.66383 1.09692 1.14151 1.21403 1.00108 0.80699 0.96785 1.22600 0.99039 0.93619 0.97452 0.89225 1.21603 0.91999 0.89170 0.95734 1.44366 1.30794 1.10507 1.47304 1.19071 1.04956 0.97528 1.14091 0.90273 1.24812 0.98641 0.96696 1.00322 1.69940 1.31924 1.09120 1.46056 0.86092 0.80340 0.77955 0.81214 1.21570 1.21661 1.20672 1.21857 0.89113 0.92035 0.94335 1.23124 0.80754 0.95387 0.98430 0.92481 1.86427 1.21850 1.38447 1.90388 1.73531 1.15837 0.97782 1.22213 0.91628 0.89973 0.91111 0.87095 0.91224 0.89585 0.91245 0.80456 0.82148 0.75696 0.91239 0.91016 0.95884 0.93904 0.93708 0.92431 0.93644 0.77770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 9.52 37.16 0.35 -0.54 16 2 C 0.14 0.87 3.80 -67.93 -0.26 0.61 16 3 C -0.16 -0.59 8.80 37.16 0.33 -0.27 16 4 N -0.28 -2.70 3.22 -54.83 -0.18 -2.87 16 5 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 6 C -0.18 -2.09 10.81 -39.36 -0.43 -2.52 16 7 C -0.02 -0.22 7.13 -82.77 -0.59 -0.81 16 8 C 0.60 9.80 7.83 -12.39 -0.10 9.70 16 9 O -0.54 -10.15 16.93 5.30 0.09 -10.06 16 10 N -0.71 -10.96 5.40 -61.30 -0.33 -11.29 16 11 C 0.13 2.17 5.12 -4.05 -0.02 2.15 16 12 C -0.11 -1.95 2.83 -88.47 -0.25 -2.21 16 13 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 14 C 0.14 2.92 6.40 -2.53 -0.02 2.91 16 15 N -0.60 -15.45 3.40 -169.86 -0.58 -16.02 16 16 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 17 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -27.07 10.33 55.49 0.57 -26.50 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.15 3.68 5.16 -2.92 -0.02 3.66 16 25 C 0.08 1.59 3.80 -24.90 -0.09 1.50 16 26 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 27 O -0.57 -10.12 13.39 -35.23 -0.47 -10.59 16 28 N -0.26 -3.35 11.67 33.42 0.39 -2.96 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.19 7.05 -51.93 -0.37 -0.17 16 36 H 0.18 0.87 7.16 -52.48 -0.38 0.50 16 37 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.41 5.95 8.06 -40.82 -0.33 5.62 16 39 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.06 1.56 7.31 -51.93 -0.38 1.19 16 45 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 46 H 0.38 5.21 9.12 45.56 0.42 5.62 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -35.18 380.55 -7.76 -42.94 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.45 Total: 7.59 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.52 Total: 6.96 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.12 Total: -59.65 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.38 Total: -20.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.18 -7.76 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958450186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.360 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds