Wall clock time and date at job start Tue Mar 31 2020 13:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47248 * 2 1 4 4 N 1.46501 * 109.46726 * 120.00001 * 2 1 3 5 5 C 1.35030 * 124.88434 * 274.97316 * 4 2 1 6 6 C 1.35362 * 107.23007 * 179.76666 * 5 4 2 7 7 C 1.41505 * 105.50106 * 0.35778 * 6 5 4 8 8 C 1.47708 * 126.51688 * 179.90335 * 7 6 5 9 9 O 1.21578 * 119.99817 * 359.71126 * 8 7 6 10 10 N 1.34776 * 120.00256 * 179.71557 * 8 7 6 11 11 C 1.46494 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.09008 * 110.88445 * 57.42402 * 12 11 10 14 14 C 1.54908 * 111.00368 * 293.54522 * 12 11 10 15 15 N 1.47425 * 104.92961 * 204.85960 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47294 * 89.99594 * 20 18 16 22 22 H 1.48503 * 109.46797 * 209.99511 * 20 18 16 23 23 H 1.48500 * 109.47035 * 329.99310 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08994 * 110.87038 * 96.25177 * 25 24 15 27 27 O 1.42903 * 110.72138 * 219.45307 * 25 24 15 28 28 N 1.28464 * 124.88683 * 94.98068 * 4 2 1 29 29 H 1.09001 * 109.47704 * 300.00446 * 1 2 3 30 30 H 1.09006 * 109.46658 * 60.00509 * 1 2 3 31 31 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47434 * 240.00019 * 2 1 3 33 33 H 1.09002 * 109.46963 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46838 * 299.99853 * 3 2 1 35 35 H 1.08999 * 109.46888 * 59.99684 * 3 2 1 36 36 H 1.08003 * 126.38797 * 0.03613 * 5 4 2 37 37 H 1.08004 * 127.24958 * 180.24639 * 6 5 4 38 38 H 0.97004 * 119.99840 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.47369 * 59.99227 * 11 10 8 40 40 H 1.09004 * 109.47192 * 299.99245 * 11 10 8 41 41 H 1.09002 * 110.36632 * 323.75356 * 14 12 11 42 42 H 1.08995 * 110.36781 * 85.96593 * 14 12 11 43 43 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 45 45 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 46 46 H 0.96696 * 113.99847 * 293.52357 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1850 -0.1150 2.4062 6 6 2.6435 -1.0726 3.2460 7 6 2.7464 -2.2458 2.4615 8 6 3.2056 -3.5726 2.9205 9 8 3.5465 -3.7313 4.0767 10 7 3.2466 -4.6072 2.0577 11 6 3.7014 -5.9231 2.5131 12 6 3.6513 -6.9119 1.3465 13 1 4.2580 -6.5596 0.5122 14 6 2.1906 -7.1708 0.9005 15 7 2.2175 -8.5011 0.2658 16 6 1.3248 -8.9590 -0.6663 17 1 0.5143 -8.3251 -0.9946 18 6 1.4610 -10.2379 -1.1883 19 7 2.4485 -11.0105 -0.7878 20 14 0.2437 -10.8621 -2.4603 21 1 0.7322 -10.5231 -3.8210 22 1 0.1093 -12.3357 -2.3354 23 1 -1.0781 -10.2236 -2.2355 24 6 3.3644 -9.2535 0.8024 25 6 4.0948 -8.3283 1.7986 26 1 3.7714 -8.5258 2.8205 27 8 5.5112 -8.4763 1.6809 28 7 2.3493 -1.9309 1.2449 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.9854 0.9160 2.6583 37 1 2.8824 -0.9637 4.2936 38 1 2.9743 -4.4805 1.1354 39 1 3.0522 -6.2746 3.3149 40 1 4.7246 -5.8467 2.8812 41 1 1.5255 -7.1758 1.7641 42 1 1.8735 -6.4144 0.1827 43 1 2.5440 -11.9041 -1.1528 44 1 4.0380 -9.5301 -0.0088 45 1 3.0154 -10.1493 1.3159 46 1 5.8397 -9.3447 1.9512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958450186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:50 Heat of formation + Delta-G solvation = -9.723413 kcal Electronic energy + Delta-G solvation = -27081.978677 eV Core-core repulsion = 23201.048107 eV Total energy + Delta-G solvation = -3880.930570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.66641 -40.71433 -39.67549 -36.72989 -36.65243 -36.10589 -34.04253 -31.94100 -31.87748 -30.86945 -29.29524 -28.21808 -27.36876 -25.81595 -24.41724 -23.30865 -22.24660 -21.62825 -21.22286 -20.71696 -19.06351 -18.71338 -18.20475 -17.68425 -17.17265 -17.03041 -16.70485 -16.25165 -15.81137 -15.72063 -15.35992 -14.97627 -14.74332 -14.61849 -14.42475 -14.10218 -13.93596 -13.87225 -13.62714 -13.25065 -13.22415 -13.11122 -13.05589 -12.73916 -12.47793 -12.34980 -12.29990 -12.13041 -11.93703 -11.88505 -11.79885 -11.57258 -11.23692 -10.83019 -10.74537 -10.34277 -10.13295 -9.95130 -8.95264 -7.87579 -5.24233 0.53570 1.22051 1.45421 1.47547 1.50244 1.56198 2.13749 2.37181 2.47181 3.21988 3.31074 3.34260 3.55096 3.65874 3.78159 3.87180 3.88614 3.94772 4.07224 4.12578 4.23886 4.39097 4.44607 4.59124 4.65346 4.67203 4.70036 4.77474 4.78935 4.83266 4.86755 4.89245 4.93542 5.18247 5.23630 5.23804 5.32319 5.39224 5.41501 5.47145 5.69278 5.92900 6.14618 6.40351 6.89207 6.92104 7.05444 7.13810 7.71670 8.36112 9.22893 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.002912 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.817763 B = 9614.194763 C =11382.766817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.158 4.158 4 N -0.270 5.270 5 C 0.001 3.999 6 C -0.201 4.201 7 C -0.047 4.047 8 C 0.601 3.399 9 O -0.572 6.572 10 N -0.707 5.707 11 C 0.147 3.853 12 C -0.090 4.090 13 H 0.083 0.917 14 C 0.141 3.859 15 N -0.625 5.625 16 C -0.244 4.244 17 H 0.085 0.915 18 C -0.066 4.066 19 N -0.951 5.951 20 Si 0.981 3.019 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.161 3.839 25 C 0.098 3.902 26 H 0.078 0.922 27 O -0.569 6.569 28 N -0.279 5.279 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.223 0.777 37 H 0.165 0.835 38 H 0.412 0.588 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.050 0.950 43 H 0.248 0.752 44 H 0.020 0.980 45 H 0.015 0.985 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 26.953 3.641 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.216 4.216 4 N -0.060 5.060 5 C -0.142 4.142 6 C -0.229 4.229 7 C -0.206 4.206 8 C 0.387 3.613 9 O -0.450 6.450 10 N -0.357 5.357 11 C 0.023 3.977 12 C -0.110 4.110 13 H 0.102 0.898 14 C 0.016 3.984 15 N -0.352 5.352 16 C -0.373 4.373 17 H 0.103 0.897 18 C -0.259 4.259 19 N -0.600 5.600 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.193 1.193 24 C 0.036 3.964 25 C 0.038 3.962 26 H 0.096 0.904 27 O -0.376 6.376 28 N -0.116 5.116 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.239 0.761 37 H 0.183 0.817 38 H 0.248 0.752 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.165 26.851 2.954 27.038 hybrid contribution -0.415 -1.386 -0.153 1.455 sum -1.580 25.465 2.801 25.668 Atomic orbital electron populations 1.22223 0.91900 1.02773 1.05033 1.22005 0.96265 0.94585 0.84049 1.22209 1.02058 0.91493 1.05813 1.46223 1.43734 1.05111 1.10916 1.23313 1.04522 1.01968 0.84350 1.21994 1.07919 0.91003 1.01957 1.21817 1.10606 0.95972 0.92166 1.17197 0.76837 0.82687 0.84563 1.90746 1.50877 1.84403 1.18950 1.45825 1.66227 1.09345 1.14335 1.21188 1.00319 0.80609 0.95613 1.22397 0.97033 0.93624 0.97903 0.89839 1.21727 0.93765 0.87224 0.95723 1.44668 1.30748 1.12473 1.47308 1.19484 1.05487 0.97879 1.14446 0.89693 1.25685 1.00604 0.97059 1.02581 1.70158 1.33566 1.09058 1.47240 0.85041 0.78632 0.76882 0.78547 1.21226 1.22049 1.19255 1.21639 0.88530 0.92374 0.93906 1.22880 0.81019 0.94459 0.97849 0.90383 1.86395 1.20671 1.40035 1.90526 1.73466 1.16605 0.99671 1.21870 0.90854 0.87603 0.93635 0.87638 0.91936 0.87498 0.89704 0.76071 0.81718 0.75217 0.91166 0.90793 0.95281 0.93122 0.94319 0.96157 0.96631 0.75674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.52 71.98 0.69 -0.66 16 2 C 0.13 1.31 3.80 44.99 0.17 1.48 16 3 C -0.16 -0.57 8.80 71.98 0.63 0.06 16 4 N -0.27 -4.76 3.22 -327.38 -1.05 -5.81 16 5 C 0.00 0.02 10.54 83.54 0.88 0.90 16 6 C -0.20 -4.45 10.81 22.41 0.24 -4.21 16 7 C -0.05 -1.33 7.13 42.46 0.30 -1.03 16 8 C 0.60 19.65 7.83 86.75 0.68 20.33 16 9 O -0.57 -21.70 16.93 -3.96 -0.07 -21.77 16 10 N -0.71 -21.67 5.40 -466.11 -2.52 -24.19 16 11 C 0.15 4.66 5.12 86.38 0.44 5.10 16 12 C -0.09 -3.23 2.83 -9.40 -0.03 -3.26 16 13 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 14 C 0.14 5.80 6.40 86.85 0.56 6.36 16 15 N -0.62 -32.55 3.40 -691.30 -2.35 -34.90 16 16 C -0.24 -13.81 10.28 84.03 0.86 -12.95 16 17 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 19 N -0.95 -57.49 10.33 21.65 0.22 -57.27 16 20 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.16 8.03 5.16 86.68 0.45 8.48 16 25 C 0.10 3.74 3.80 31.78 0.12 3.86 16 26 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 27 O -0.57 -19.88 13.39 -148.98 -1.99 -21.87 16 28 N -0.28 -7.07 11.67 -48.18 -0.56 -7.64 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.11 -0.01 8.14 -2.39 -0.02 -0.02 16 35 H 0.08 0.07 7.05 -2.39 -0.02 0.06 16 36 H 0.22 1.14 7.16 -2.91 -0.02 1.12 16 37 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.41 11.96 8.06 -92.71 -0.75 11.21 16 39 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 40 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.03 1.19 8.00 -2.39 -0.02 1.17 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.02 1.15 7.31 -2.38 -0.02 1.13 16 45 H 0.02 0.85 7.51 -2.39 -0.02 0.83 16 46 H 0.39 10.59 9.12 -74.06 -0.68 9.91 16 Total: -1.00 -78.41 380.55 -0.26 -78.67 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.42 Total: 25.69 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 6.46 Total: 21.13 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -6.26 Total: -129.80 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.06 Total: -43.64 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.41 -0.26 -78.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958450186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.942 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds