Wall clock time and date at job start Tue Mar 31 2020 13:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 N 1.46506 * 109.46604 * 119.99437 * 2 1 3 5 5 C 1.35034 * 124.88249 * 274.71691 * 4 2 1 6 6 C 1.35366 * 107.22263 * 179.89594 * 5 4 2 7 7 C 1.41497 * 105.50909 * 0.35776 * 6 5 4 8 8 C 1.47704 * 126.52429 * 179.79871 * 7 6 5 9 9 O 1.21571 * 119.99711 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00049 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47223 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.88184 * 302.57325 * 12 11 10 14 14 C 1.54905 * 111.00027 * 66.45377 * 12 11 10 15 15 N 1.47423 * 104.83078 * 155.08444 * 14 12 11 16 16 C 1.36943 * 125.65136 * 155.83282 * 15 14 12 17 17 H 1.08002 * 119.99504 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00337 * 180.02562 * 16 15 14 19 19 N 1.31613 * 119.99959 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47040 * 119.99916 * 20 18 16 23 23 H 1.48502 * 109.47017 * 239.99705 * 20 18 16 24 24 C 1.47014 * 108.70365 * 335.87136 * 15 14 12 25 25 C 1.54318 * 107.27335 * 1.05945 * 24 15 14 26 26 H 1.08999 * 110.72776 * 140.56018 * 25 24 15 27 27 O 1.42905 * 110.71945 * 263.83252 * 25 24 15 28 28 N 1.28466 * 124.88356 * 95.02966 * 4 2 1 29 29 H 1.08995 * 109.47528 * 300.00867 * 1 2 3 30 30 H 1.09002 * 109.46745 * 60.00543 * 1 2 3 31 31 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47279 * 239.99591 * 2 1 3 33 33 H 1.08999 * 109.47100 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46811 * 299.99417 * 3 2 1 35 35 H 1.08995 * 109.47571 * 59.99159 * 3 2 1 36 36 H 1.07998 * 126.39152 * 0.02562 * 5 4 2 37 37 H 1.08011 * 127.24661 * 180.09347 * 6 5 4 38 38 H 0.96993 * 119.99862 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47268 * 300.00214 * 11 10 8 40 40 H 1.08997 * 109.47685 * 60.00011 * 11 10 8 41 41 H 1.09001 * 110.37112 * 273.92041 * 14 12 11 42 42 H 1.09000 * 110.37605 * 36.24648 * 14 12 11 43 43 H 0.97004 * 120.00252 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.88664 * 120.47676 * 24 15 14 45 45 H 1.09006 * 109.88088 * 241.48360 * 24 15 14 46 46 H 0.96704 * 113.99949 * 293.52066 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1897 -0.1136 2.4051 6 6 2.6492 -1.0709 3.2446 7 6 2.7478 -2.2453 2.4615 8 6 3.2082 -3.5717 2.9202 9 8 3.5498 -3.7302 4.0761 10 7 3.2496 -4.6063 2.0573 11 6 3.7067 -5.9216 2.5121 12 6 3.6565 -6.9105 1.3456 13 1 2.6502 -6.9720 0.9315 14 6 4.6851 -6.5309 0.2514 15 7 4.9746 -7.7952 -0.4493 16 6 5.4355 -7.9084 -1.7339 17 1 5.6175 -7.0213 -2.3224 18 6 5.6689 -9.1633 -2.2795 19 7 5.4476 -10.2443 -1.5621 20 14 6.2983 -9.3176 -4.0315 21 1 6.4651 -7.9637 -4.6186 22 1 7.6064 -10.0204 -4.0274 23 1 5.3232 -10.0912 -4.8414 24 6 4.6856 -8.9145 0.4590 25 6 4.1664 -8.3099 1.7805 26 1 3.3505 -8.9092 2.1846 27 8 5.2259 -8.1888 2.7317 28 7 2.3502 -1.9306 1.2448 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8898 36 1 1.9945 0.9186 2.6559 37 1 2.8936 -0.9605 4.2909 38 1 2.9767 -4.4798 1.1351 39 1 4.7301 -5.8437 2.8792 40 1 3.0588 -6.2740 3.3147 41 1 4.2548 -5.8048 -0.4384 42 1 5.5925 -6.1325 0.7054 43 1 5.6110 -11.1212 -1.9433 44 1 3.9233 -9.5595 0.0218 45 1 5.5947 -9.4872 0.6425 46 1 5.5802 -9.0356 3.0358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958450187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:54 Heat of formation + Delta-G solvation = 19.188741 kcal Electronic energy + Delta-G solvation = -27172.937313 eV Core-core repulsion = 23293.260468 eV Total energy + Delta-G solvation = -3879.676845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.82368 -39.33662 -38.13598 -36.15583 -34.85119 -34.48067 -32.12372 -31.06809 -30.71588 -29.40252 -27.89138 -27.66300 -25.65448 -24.39783 -23.29267 -22.29385 -20.64765 -20.33676 -19.84673 -19.48034 -17.94040 -17.28680 -16.94060 -16.23681 -16.17281 -15.50367 -15.01463 -14.82036 -14.75479 -14.06607 -14.00855 -13.92891 -13.64570 -13.47880 -13.35141 -13.03400 -12.82864 -12.73018 -12.57169 -12.53441 -11.93958 -11.80111 -11.69010 -11.35594 -11.19185 -11.00271 -10.81068 -10.58670 -10.40493 -10.17219 -9.98817 -9.82052 -9.72454 -9.38993 -9.19681 -9.13320 -8.73815 -8.64007 -6.83130 -5.72246 -3.04793 1.56835 2.04709 2.19537 3.38420 3.39594 3.45138 3.47608 3.55712 3.95595 4.28805 4.48625 4.49293 4.54553 4.57599 4.77061 4.90896 4.99615 5.09686 5.18404 5.24154 5.26720 5.38874 5.43342 5.48472 5.58159 5.58708 5.60101 5.64906 5.67636 5.97563 6.12556 6.15065 6.28539 6.44904 6.47099 6.59660 6.61259 6.72152 6.96393 7.42375 7.51845 7.61642 7.77074 7.90305 8.23616 8.28299 8.40425 9.21083 9.81728 10.47799 11.39957 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.002905 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.215538 B = 9636.453826 C =11351.946223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.277 5.277 5 C -0.021 4.021 6 C -0.180 4.180 7 C -0.015 4.015 8 C 0.601 3.399 9 O -0.538 6.538 10 N -0.712 5.712 11 C 0.140 3.860 12 C -0.109 4.109 13 H 0.088 0.912 14 C 0.145 3.855 15 N -0.603 5.603 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.925 5.925 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.153 3.847 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.563 6.563 28 N -0.259 5.259 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.406 0.594 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.251 0.749 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 21.022 6.084 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.066 5.066 5 C -0.164 4.164 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.385 3.615 9 O -0.414 6.414 10 N -0.363 5.363 11 C 0.017 3.983 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.330 5.330 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.573 5.573 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.028 3.972 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.369 6.369 28 N -0.094 5.094 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.195 0.805 37 H 0.178 0.822 38 H 0.241 0.759 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.763 20.960 5.486 24.192 hybrid contribution 0.386 -0.359 -0.615 0.810 sum -10.377 20.601 4.871 23.575 Atomic orbital electron populations 1.22226 0.92822 1.03819 1.03435 1.21607 0.95548 0.93361 0.85552 1.22195 1.02636 0.93471 1.03943 1.45751 1.45352 1.05969 1.09566 1.22724 1.07244 1.00742 0.85661 1.21767 1.06671 0.91072 1.01290 1.22020 1.08301 0.96338 0.90849 1.16879 0.77667 0.81865 0.85091 1.90782 1.49179 1.83619 1.17801 1.45963 1.66289 1.10060 1.14010 1.21217 1.00914 0.80053 0.96147 1.22672 1.00249 0.94096 0.95868 0.89335 1.21570 0.94594 0.90117 0.91851 1.44385 1.77624 0.99693 1.11254 1.19133 1.36170 0.92691 0.87234 0.90343 1.24790 1.01917 0.95372 0.98561 1.69942 1.54849 0.96929 1.35602 0.86024 0.78128 0.77479 0.84025 1.20519 1.21774 1.21791 1.21854 0.99545 0.89943 0.85864 1.23114 0.88710 0.95166 0.90714 0.92499 1.86411 1.53898 1.34841 1.61730 1.73535 1.15944 0.97843 1.22109 0.91654 0.89989 0.91231 0.87074 0.91161 0.89595 0.91261 0.80473 0.82157 0.75896 0.90027 0.91705 0.94492 0.95632 0.93837 0.93004 0.93205 0.77838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.52 37.16 0.35 -0.49 16 2 C 0.14 0.88 3.80 -67.93 -0.26 0.62 16 3 C -0.16 -0.63 8.80 37.15 0.33 -0.31 16 4 N -0.28 -2.74 3.22 -54.83 -0.18 -2.91 16 5 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 6 C -0.18 -2.14 10.81 -39.37 -0.43 -2.56 16 7 C -0.01 -0.21 7.13 -82.77 -0.59 -0.80 16 8 C 0.60 10.00 7.82 -12.39 -0.10 9.91 16 9 O -0.54 -10.42 16.93 5.30 0.09 -10.33 16 10 N -0.71 -11.22 5.40 -61.30 -0.33 -11.55 16 11 C 0.14 2.35 4.74 -4.04 -0.02 2.33 16 12 C -0.11 -1.96 3.03 -88.47 -0.27 -2.23 16 13 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 14 C 0.14 3.10 6.40 -2.53 -0.02 3.08 16 15 N -0.60 -15.58 3.39 -170.08 -0.58 -16.16 16 16 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -27.10 10.31 55.49 0.57 -26.53 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.15 3.68 5.14 -3.07 -0.02 3.66 16 25 C 0.08 1.56 4.09 -24.90 -0.10 1.46 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 O -0.56 -10.15 12.10 -35.23 -0.43 -10.57 16 28 N -0.26 -3.40 11.67 33.42 0.39 -3.01 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.20 7.05 -51.93 -0.37 -0.16 16 36 H 0.18 0.90 7.16 -52.49 -0.38 0.52 16 37 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.41 5.98 8.06 -40.82 -0.33 5.65 16 39 H 0.08 1.54 7.42 -51.93 -0.39 1.16 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 45 H 0.05 1.32 7.43 -51.93 -0.39 0.94 16 46 H 0.37 5.33 9.12 45.56 0.42 5.75 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -35.43 378.71 -7.74 -43.17 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.42 Total: 7.54 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.54 Total: 7.44 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.12 Total: -60.16 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.34 Total: -20.90 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.43 -7.74 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958450187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.358 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds