Wall clock time and date at job start Tue Mar 31 2020 13:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 N 1.46506 * 109.46604 * 119.99437 * 2 1 3 5 5 C 1.35034 * 124.88249 * 274.71691 * 4 2 1 6 6 C 1.35366 * 107.22263 * 179.89594 * 5 4 2 7 7 C 1.41497 * 105.50909 * 0.35776 * 6 5 4 8 8 C 1.47704 * 126.52429 * 179.79871 * 7 6 5 9 9 O 1.21571 * 119.99711 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00049 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47223 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.88184 * 302.57325 * 12 11 10 14 14 C 1.54905 * 111.00027 * 66.45377 * 12 11 10 15 15 N 1.47423 * 104.83078 * 155.08444 * 14 12 11 16 16 C 1.36943 * 125.65136 * 155.83282 * 15 14 12 17 17 H 1.08002 * 119.99504 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00337 * 180.02562 * 16 15 14 19 19 N 1.31613 * 119.99959 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47040 * 119.99916 * 20 18 16 23 23 H 1.48502 * 109.47017 * 239.99705 * 20 18 16 24 24 C 1.47014 * 108.70365 * 335.87136 * 15 14 12 25 25 C 1.54318 * 107.27335 * 1.05945 * 24 15 14 26 26 H 1.08999 * 110.72776 * 140.56018 * 25 24 15 27 27 O 1.42905 * 110.71945 * 263.83252 * 25 24 15 28 28 N 1.28466 * 124.88356 * 95.02966 * 4 2 1 29 29 H 1.08995 * 109.47528 * 300.00867 * 1 2 3 30 30 H 1.09002 * 109.46745 * 60.00543 * 1 2 3 31 31 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47279 * 239.99591 * 2 1 3 33 33 H 1.08999 * 109.47100 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46811 * 299.99417 * 3 2 1 35 35 H 1.08995 * 109.47571 * 59.99159 * 3 2 1 36 36 H 1.07998 * 126.39152 * 0.02562 * 5 4 2 37 37 H 1.08011 * 127.24661 * 180.09347 * 6 5 4 38 38 H 0.96993 * 119.99862 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47268 * 300.00214 * 11 10 8 40 40 H 1.08997 * 109.47685 * 60.00011 * 11 10 8 41 41 H 1.09001 * 110.37112 * 273.92041 * 14 12 11 42 42 H 1.09000 * 110.37605 * 36.24648 * 14 12 11 43 43 H 0.97004 * 120.00252 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.88664 * 120.47676 * 24 15 14 45 45 H 1.09006 * 109.88088 * 241.48360 * 24 15 14 46 46 H 0.96704 * 113.99949 * 293.52066 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1897 -0.1136 2.4051 6 6 2.6492 -1.0709 3.2446 7 6 2.7478 -2.2453 2.4615 8 6 3.2082 -3.5717 2.9202 9 8 3.5498 -3.7302 4.0761 10 7 3.2496 -4.6063 2.0573 11 6 3.7067 -5.9216 2.5121 12 6 3.6565 -6.9105 1.3456 13 1 2.6502 -6.9720 0.9315 14 6 4.6851 -6.5309 0.2514 15 7 4.9746 -7.7952 -0.4493 16 6 5.4355 -7.9084 -1.7339 17 1 5.6175 -7.0213 -2.3224 18 6 5.6689 -9.1633 -2.2795 19 7 5.4476 -10.2443 -1.5621 20 14 6.2983 -9.3176 -4.0315 21 1 6.4651 -7.9637 -4.6186 22 1 7.6064 -10.0204 -4.0274 23 1 5.3232 -10.0912 -4.8414 24 6 4.6856 -8.9145 0.4590 25 6 4.1664 -8.3099 1.7805 26 1 3.3505 -8.9092 2.1846 27 8 5.2259 -8.1888 2.7317 28 7 2.3502 -1.9306 1.2448 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8898 36 1 1.9945 0.9186 2.6559 37 1 2.8936 -0.9605 4.2909 38 1 2.9767 -4.4798 1.1351 39 1 4.7301 -5.8437 2.8792 40 1 3.0588 -6.2740 3.3147 41 1 4.2548 -5.8048 -0.4384 42 1 5.5925 -6.1325 0.7054 43 1 5.6110 -11.1212 -1.9433 44 1 3.9233 -9.5595 0.0218 45 1 5.5947 -9.4872 0.6425 46 1 5.5802 -9.0356 3.0358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958450187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:54 Heat of formation + Delta-G solvation = -8.147084 kcal Electronic energy + Delta-G solvation = -27174.122683 eV Core-core repulsion = 23293.260468 eV Total energy + Delta-G solvation = -3880.862216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.66411 -40.71220 -39.71264 -36.72288 -36.42003 -36.08348 -33.95880 -31.91821 -31.87753 -30.85955 -29.41735 -28.21682 -27.36068 -25.84364 -24.42795 -23.30879 -22.20332 -21.53351 -21.12694 -20.69940 -19.14791 -18.85572 -18.11835 -17.61922 -17.04218 -16.82807 -16.79996 -16.16087 -15.77858 -15.47664 -15.38092 -15.12872 -14.81761 -14.69745 -14.39992 -14.29459 -13.95220 -13.84161 -13.54233 -13.24963 -13.15074 -13.09908 -13.04873 -12.70916 -12.34982 -12.32703 -12.13110 -12.09403 -11.92239 -11.88530 -11.77990 -11.65931 -11.18437 -10.79850 -10.73445 -10.32919 -10.12226 -9.93769 -8.92423 -7.87169 -5.22535 0.54119 1.22068 1.45089 1.46172 1.50504 1.56523 2.17289 2.38172 2.47719 3.26450 3.32045 3.36104 3.54668 3.73653 3.88295 3.89803 3.92690 3.95313 3.99691 4.07544 4.24775 4.41930 4.57402 4.61914 4.65717 4.67224 4.77114 4.78692 4.81266 4.83166 4.89310 4.90468 4.98297 5.18405 5.23750 5.29534 5.34648 5.40481 5.41518 5.52510 5.69039 5.93023 6.16443 6.42553 6.92048 6.95354 7.08199 7.15786 7.74063 8.38969 9.23276 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.002905 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.215538 B = 9636.453826 C =11351.946223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.159 4.159 4 N -0.270 5.270 5 C 0.002 3.998 6 C -0.201 4.201 7 C -0.047 4.047 8 C 0.599 3.401 9 O -0.573 6.573 10 N -0.708 5.708 11 C 0.155 3.845 12 C -0.093 4.093 13 H 0.105 0.895 14 C 0.144 3.856 15 N -0.624 5.624 16 C -0.243 4.243 17 H 0.081 0.919 18 C -0.065 4.065 19 N -0.951 5.951 20 Si 0.980 3.020 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.160 3.840 25 C 0.097 3.903 26 H 0.090 0.910 27 O -0.570 6.570 28 N -0.278 5.278 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.223 0.777 37 H 0.165 0.835 38 H 0.411 0.589 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.011 0.989 43 H 0.247 0.753 44 H 0.024 0.976 45 H 0.016 0.984 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 23.703 5.618 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.217 4.217 4 N -0.060 5.060 5 C -0.141 4.141 6 C -0.230 4.230 7 C -0.205 4.205 8 C 0.385 3.615 9 O -0.451 6.451 10 N -0.358 5.358 11 C 0.031 3.969 12 C -0.113 4.113 13 H 0.123 0.877 14 C 0.019 3.981 15 N -0.350 5.350 16 C -0.372 4.372 17 H 0.098 0.902 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.216 1.216 24 C 0.035 3.965 25 C 0.037 3.963 26 H 0.108 0.892 27 O -0.378 6.378 28 N -0.116 5.116 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.239 0.761 37 H 0.182 0.818 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.034 0.966 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.132 23.658 5.015 27.056 hybrid contribution 0.809 -1.098 -0.514 1.458 sum -11.323 22.559 4.500 25.639 Atomic orbital electron populations 1.22210 0.91629 1.02880 1.05041 1.22012 0.96457 0.94490 0.84006 1.22213 1.01980 0.91630 1.05846 1.46230 1.43692 1.05124 1.10934 1.23308 1.04521 1.01907 0.84391 1.21994 1.07925 0.91023 1.02009 1.21822 1.10586 0.95976 0.92154 1.17222 0.76893 0.82739 0.84610 1.90746 1.50862 1.84371 1.19148 1.45884 1.66043 1.09668 1.14238 1.20955 0.99977 0.80334 0.95642 1.22561 0.99862 0.93835 0.94994 0.87670 1.21634 0.95002 0.88777 0.92676 1.44700 1.77487 1.01689 1.11170 1.19500 1.36161 0.92971 0.88542 0.90156 1.25636 1.02525 0.95116 1.02552 1.70151 1.55683 0.97060 1.37076 0.84991 0.77067 0.77797 0.79355 1.19122 1.22031 1.21580 1.21692 0.97301 0.89442 0.88091 1.22945 0.89425 0.95535 0.88413 0.89242 1.86391 1.53950 1.36420 1.61020 1.73467 1.16662 0.99748 1.21678 0.90829 0.87605 0.93409 0.87742 0.92151 0.87471 0.89628 0.76051 0.81791 0.75273 0.92138 0.90726 0.93610 0.97105 0.94321 0.95750 0.96605 0.75919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.52 71.98 0.69 -0.53 16 2 C 0.13 1.32 3.80 44.99 0.17 1.49 16 3 C -0.16 -0.66 8.80 71.98 0.63 -0.03 16 4 N -0.27 -4.83 3.22 -327.38 -1.05 -5.88 16 5 C 0.00 0.03 10.54 83.54 0.88 0.91 16 6 C -0.20 -4.59 10.81 22.41 0.24 -4.34 16 7 C -0.05 -1.35 7.13 42.45 0.30 -1.05 16 8 C 0.60 20.22 7.82 86.74 0.68 20.90 16 9 O -0.57 -22.62 16.93 -3.94 -0.07 -22.69 16 10 N -0.71 -22.28 5.40 -466.10 -2.52 -24.80 16 11 C 0.15 5.13 4.74 86.38 0.41 5.54 16 12 C -0.09 -3.27 3.03 -9.40 -0.03 -3.30 16 13 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 14 C 0.14 6.21 6.40 86.85 0.56 6.77 16 15 N -0.62 -32.83 3.39 -692.02 -2.35 -35.18 16 16 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 17 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 19 N -0.95 -57.08 10.31 21.65 0.22 -56.86 16 20 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 24 C 0.16 7.86 5.14 86.73 0.45 8.31 16 25 C 0.10 3.58 4.09 31.78 0.13 3.71 16 26 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 27 O -0.57 -20.22 12.10 -148.98 -1.80 -22.02 16 28 N -0.28 -7.15 11.67 -48.18 -0.56 -7.71 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.08 0.10 7.05 -2.39 -0.02 0.08 16 36 H 0.22 1.21 7.16 -2.91 -0.02 1.19 16 37 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.41 12.05 8.06 -92.71 -0.75 11.31 16 39 H 0.06 2.30 7.42 -2.39 -0.02 2.28 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.01 0.51 8.00 -2.39 -0.02 0.49 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.02 1.32 7.38 -2.39 -0.02 1.30 16 45 H 0.02 0.87 7.43 -2.38 -0.02 0.85 16 46 H 0.39 10.90 9.12 -74.05 -0.68 10.22 16 Total: -1.00 -79.41 378.71 -0.09 -79.50 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.42 Total: 25.40 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.43 Total: 22.06 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -6.26 Total: -130.44 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.87 Total: -44.71 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -79.41 -0.09 -79.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958450187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.350 kcal (2) G-P(sol) polarization free energy of solvation -79.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds