Wall clock time and date at job start Tue Mar 31 2020 13:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47058 * 2 1 4 4 N 1.46503 * 109.47120 * 119.99967 * 2 1 3 5 5 C 1.35031 * 124.88471 * 274.99849 * 4 2 1 6 6 C 1.35361 * 107.23004 * 179.97438 * 5 4 2 7 7 C 1.41506 * 105.49985 * 359.97438 * 6 5 4 8 8 C 1.47718 * 126.51706 * 180.02562 * 7 6 5 9 9 O 1.21573 * 119.99762 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00256 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00561 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47606 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.88411 * 57.42720 * 12 11 10 14 14 C 1.54908 * 111.00745 * 293.54908 * 12 11 10 15 15 N 1.47414 * 104.83427 * 204.87537 * 14 12 11 16 16 C 1.36941 * 125.65304 * 204.08670 * 15 14 12 17 17 H 1.08008 * 119.99381 * 6.65072 * 16 15 14 18 18 C 1.38812 * 120.00565 * 186.64665 * 16 15 14 19 19 N 1.31618 * 119.99440 * 7.38012 * 18 16 15 20 20 Si 1.86793 * 120.00104 * 187.37813 * 18 16 15 21 21 H 1.48507 * 109.47081 * 84.99136 * 20 18 16 22 22 H 1.48502 * 109.47308 * 324.99111 * 20 18 16 23 23 H 1.48499 * 109.47100 * 204.98882 * 20 18 16 24 24 C 1.47021 * 108.70498 * 24.35841 * 15 14 12 25 25 C 1.54340 * 107.26384 * 358.57942 * 24 15 14 26 26 H 1.08998 * 110.84923 * 219.67449 * 25 24 15 27 27 O 1.42902 * 110.66092 * 96.52489 * 25 24 15 28 28 N 1.28471 * 124.88085 * 95.28826 * 4 2 1 29 29 H 1.09001 * 109.46847 * 299.99472 * 1 2 3 30 30 H 1.08995 * 109.47106 * 59.99643 * 1 2 3 31 31 H 1.09001 * 109.46674 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46724 * 240.00061 * 2 1 3 33 33 H 1.09001 * 109.47020 * 300.00216 * 3 2 1 34 34 H 1.08997 * 109.46616 * 60.00116 * 3 2 1 35 35 H 1.08995 * 109.46953 * 180.02562 * 3 2 1 36 36 H 1.08001 * 126.38749 * 0.02562 * 5 4 2 37 37 H 1.07992 * 127.25518 * 180.02562 * 6 5 4 38 38 H 0.97009 * 119.99695 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.46981 * 59.99760 * 11 10 8 40 40 H 1.09000 * 109.47239 * 300.00131 * 11 10 8 41 41 H 1.09003 * 110.36417 * 86.03468 * 14 12 11 42 42 H 1.09009 * 110.45681 * 323.76476 * 14 12 11 43 43 H 0.97004 * 119.99432 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.88851 * 118.12853 * 24 15 14 45 45 H 1.09007 * 109.88284 * 239.29575 * 24 15 14 46 46 H 0.96699 * 114.00219 * 66.41973 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1848 -0.1151 2.4063 6 6 2.6480 -1.0715 3.2449 7 6 2.7455 -2.2461 2.4617 8 6 3.2044 -3.5730 2.9208 9 8 3.5447 -3.7320 4.0770 10 7 3.2459 -4.6074 2.0578 11 6 3.7015 -5.9233 2.5129 12 6 3.6518 -6.9118 1.3462 13 1 4.2581 -6.5591 0.5119 14 6 2.1912 -7.1715 0.9003 15 7 2.2210 -8.5020 0.2663 16 6 1.3290 -8.9625 -0.6652 17 1 0.5827 -8.2969 -1.0733 18 6 1.3841 -10.2845 -1.0850 19 7 2.1941 -11.1317 -0.4862 20 14 0.3088 -10.8609 -2.4994 21 1 0.9888 -10.5722 -3.7877 22 1 -0.9922 -10.1463 -2.4553 23 1 0.0750 -12.3225 -2.3797 24 6 3.3632 -9.2552 0.8044 25 6 4.0963 -8.3283 1.7971 26 1 5.1768 -8.4404 1.7069 27 8 3.6728 -8.5885 3.1369 28 7 2.3549 -1.9296 1.2433 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.9849 0.9158 2.6585 37 1 2.8910 -0.9616 4.2913 38 1 2.9747 -4.4804 1.1351 39 1 3.0525 -6.2752 3.3148 40 1 4.7246 -5.8462 2.8809 41 1 1.8739 -6.4158 0.1817 42 1 1.5247 -7.1771 1.7629 43 1 2.2323 -12.0556 -0.7793 44 1 3.0089 -10.1478 1.3201 45 1 4.0371 -9.5353 -0.0052 46 1 3.9259 -9.4615 3.4668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958450188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:58 Heat of formation + Delta-G solvation = 18.751869 kcal Electronic energy + Delta-G solvation = -27182.666852 eV Core-core repulsion = 23302.971062 eV Total energy + Delta-G solvation = -3879.695789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.82391 -39.33671 -38.13447 -36.15318 -34.84750 -34.47677 -32.12638 -31.06878 -30.71683 -29.40527 -27.88364 -27.66352 -25.65960 -24.39578 -23.29144 -22.29473 -20.64947 -20.34157 -19.84784 -19.48108 -17.94038 -17.28631 -16.92865 -16.29792 -16.11721 -15.50080 -15.01177 -14.79530 -14.77177 -14.09467 -14.00351 -13.93766 -13.62580 -13.51684 -13.25124 -13.12271 -12.83909 -12.67655 -12.57080 -12.54130 -11.93250 -11.78233 -11.69128 -11.42108 -11.17005 -11.00769 -10.80644 -10.56695 -10.40750 -10.19194 -10.00273 -9.82697 -9.71148 -9.39041 -9.19682 -9.14979 -8.73855 -8.63207 -6.82007 -5.71354 -3.05967 1.56773 2.04680 2.19542 3.38281 3.40162 3.44898 3.46848 3.55655 3.95468 4.29043 4.48888 4.48952 4.54669 4.57759 4.77039 4.91216 5.00348 5.10165 5.18175 5.24518 5.26693 5.38783 5.42811 5.46901 5.58046 5.60316 5.62018 5.64428 5.67516 5.97353 6.12347 6.14110 6.28505 6.45092 6.46148 6.59662 6.61273 6.72185 6.96901 7.31186 7.59007 7.61513 7.76241 7.90170 8.23857 8.29749 8.40408 9.20215 9.81699 10.48129 11.39449 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.002931 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.918324 B = 9551.302525 C =11374.422437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.277 5.277 5 C -0.021 4.021 6 C -0.180 4.180 7 C -0.015 4.015 8 C 0.601 3.399 9 O -0.538 6.538 10 N -0.712 5.712 11 C 0.140 3.860 12 C -0.109 4.109 13 H 0.088 0.912 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.148 3.852 25 C 0.085 3.915 26 H 0.056 0.944 27 O -0.563 6.563 28 N -0.259 5.259 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.406 0.594 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.252 0.748 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 24.262 2.389 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.222 4.222 4 N -0.066 5.066 5 C -0.164 4.164 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.385 3.615 9 O -0.414 6.414 10 N -0.363 5.363 11 C 0.017 3.983 12 C -0.129 4.129 13 H 0.106 0.894 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.023 3.977 25 C 0.024 3.976 26 H 0.074 0.926 27 O -0.368 6.368 28 N -0.094 5.094 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.195 0.805 37 H 0.178 0.822 38 H 0.241 0.759 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.510 24.125 1.874 24.245 hybrid contribution -0.371 -0.529 -0.482 0.806 sum 1.138 23.596 1.392 23.665 Atomic orbital electron populations 1.22236 0.92749 1.03976 1.03444 1.21606 0.95631 0.93285 0.85507 1.22195 1.02514 0.93525 1.03973 1.45751 1.45304 1.06072 1.09520 1.22721 1.07156 1.00795 0.85692 1.21765 1.06692 0.91047 1.01292 1.22025 1.08372 0.96270 0.90834 1.16880 0.77671 0.81880 0.85074 1.90783 1.49246 1.83670 1.17668 1.45963 1.66422 1.09938 1.14001 1.21212 1.00116 0.79811 0.97182 1.22660 0.99967 0.93437 0.96802 0.89367 1.21564 0.92371 0.88789 0.95455 1.44384 1.30361 1.10842 1.47167 1.19064 1.09225 0.93916 1.13253 0.90444 1.24804 0.99875 0.95760 1.00149 1.69929 1.41105 1.03706 1.42303 0.86121 0.79805 0.77700 0.82051 1.21597 1.20728 1.21723 1.21904 0.88617 0.93292 0.93892 1.23072 0.96364 0.94968 0.83149 0.92579 1.86410 1.82355 1.38944 1.29110 1.73535 1.15923 0.97793 1.22193 0.91629 0.89981 0.91105 0.87125 0.89610 0.91238 0.91246 0.80476 0.82156 0.75904 0.90008 0.91693 0.94515 0.95659 0.93771 0.91523 0.94596 0.77779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 9.52 37.16 0.35 -0.56 16 2 C 0.14 0.88 3.80 -67.92 -0.26 0.62 16 3 C -0.16 -0.60 8.81 37.16 0.33 -0.27 16 4 N -0.28 -2.73 3.22 -54.82 -0.18 -2.91 16 5 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 6 C -0.18 -2.13 10.81 -39.36 -0.43 -2.56 16 7 C -0.01 -0.21 7.13 -82.76 -0.59 -0.80 16 8 C 0.60 10.00 7.83 -12.39 -0.10 9.91 16 9 O -0.54 -10.43 16.93 5.30 0.09 -10.34 16 10 N -0.71 -11.21 5.40 -61.30 -0.33 -11.55 16 11 C 0.14 2.35 4.74 -4.05 -0.02 2.34 16 12 C -0.11 -1.95 3.03 -88.48 -0.27 -2.22 16 13 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 14 C 0.14 3.09 6.40 -2.54 -0.02 3.08 16 15 N -0.60 -15.55 3.39 -170.06 -0.58 -16.12 16 16 C -0.23 -6.38 10.26 -15.06 -0.15 -6.53 16 17 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 18 C -0.01 -0.28 5.45 -17.43 -0.09 -0.37 16 19 N -0.92 -27.10 10.48 55.49 0.58 -26.52 16 20 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.15 3.55 5.19 -3.06 -0.02 3.54 16 25 C 0.08 1.59 4.09 -24.89 -0.10 1.49 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 O -0.56 -10.20 12.09 -35.23 -0.43 -10.63 16 28 N -0.26 -3.40 11.67 33.42 0.39 -3.01 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.20 7.05 -51.93 -0.37 -0.17 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.18 0.90 7.16 -52.49 -0.38 0.52 16 37 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.41 5.97 8.06 -40.82 -0.33 5.64 16 39 H 0.08 1.55 7.43 -51.93 -0.39 1.17 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.58 8.01 -51.92 -0.42 0.17 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.07 1.78 6.92 -51.93 -0.36 1.42 16 45 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 46 H 0.38 5.40 9.12 45.56 0.42 5.82 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -35.48 378.94 -7.73 -43.21 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.42 Total: 7.67 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.54 Total: 7.28 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.11 Total: -60.10 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.34 Total: -20.96 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.48 -7.73 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958450188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.964 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds