Wall clock time and date at job start Tue Mar 31 2020 13:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47341 * 2 1 4 4 N 1.46506 * 109.46671 * 119.99903 * 2 1 3 5 5 C 1.34259 * 125.74995 * 275.30464 * 4 2 1 6 6 C 1.38045 * 107.41309 * 180.11417 * 5 4 2 7 7 C 1.47432 * 126.41742 * 179.87359 * 6 5 4 8 8 O 1.21604 * 119.99434 * 359.71098 * 7 6 5 9 9 N 1.34770 * 120.00253 * 179.70823 * 7 6 5 10 10 C 1.46503 * 119.99968 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47329 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.91549 * 302.55831 * 11 10 9 13 13 C 1.54917 * 111.00242 * 66.45559 * 11 10 9 14 14 N 1.47421 * 104.83002 * 155.08843 * 13 11 10 15 15 C 1.36936 * 125.64616 * 155.84135 * 14 13 11 16 16 H 1.08001 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.38822 * 119.99936 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99690 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00114 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46839 * 60.00190 * 19 17 15 21 21 H 1.48493 * 109.47110 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47126 * 300.00275 * 19 17 15 23 23 C 1.47021 * 108.70450 * 335.86832 * 14 13 11 24 24 C 1.54326 * 107.27002 * 1.06211 * 23 14 13 25 25 H 1.09000 * 110.72348 * 263.82382 * 24 23 14 26 26 O 1.42908 * 110.71556 * 140.55446 * 24 23 14 27 27 C 1.41294 * 107.17090 * 359.60637 * 6 5 4 28 28 N 1.30442 * 108.02285 * 0.24636 * 27 6 5 29 29 H 1.08997 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47036 * 300.00242 * 1 2 3 31 31 H 1.08999 * 109.46896 * 60.00211 * 1 2 3 32 32 H 1.08995 * 109.47036 * 239.99758 * 2 1 3 33 33 H 1.08998 * 109.47176 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46953 * 299.99754 * 3 2 1 35 35 H 1.09003 * 109.47092 * 59.99572 * 3 2 1 36 36 H 1.07994 * 126.29962 * 359.96801 * 5 4 2 37 37 H 0.96996 * 120.00278 * 0.02562 * 9 7 6 38 38 H 1.09006 * 109.46676 * 60.00540 * 10 9 7 39 39 H 1.08999 * 109.47518 * 300.00805 * 10 9 7 40 40 H 1.09002 * 110.36419 * 273.92650 * 13 11 10 41 41 H 1.08994 * 110.36559 * 36.13399 * 13 11 10 42 42 H 0.97002 * 119.99882 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.88310 * 120.48076 * 23 14 13 44 44 H 1.09002 * 109.88672 * 241.49116 * 23 14 13 45 45 H 0.96698 * 113.99690 * 66.48080 * 26 24 23 46 46 H 1.08001 * 125.99108 * 180.23784 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1848 -0.1376 2.4083 6 6 2.6618 -1.1225 3.2498 7 6 2.9922 -0.9686 4.6783 8 8 2.8554 0.1109 5.2211 9 7 3.4459 -2.0243 5.3826 10 6 3.7747 -1.8712 6.8020 11 6 4.2635 -3.2095 7.3595 12 1 3.5132 -3.9874 7.2179 13 6 5.6140 -3.6177 6.7195 14 7 6.2468 -4.5083 7.7093 15 6 7.1886 -5.4640 7.4359 16 1 7.5270 -5.6140 6.4213 17 6 7.7084 -6.2401 8.4628 18 7 7.2956 -6.0576 9.6992 19 14 8.9926 -7.5443 8.0898 20 1 10.1876 -6.9033 7.4844 21 1 9.3820 -8.2297 9.3482 22 1 8.4287 -8.5369 7.1401 23 6 5.6987 -4.2009 9.0385 24 6 4.6545 -3.0795 8.8553 25 1 5.0974 -2.1037 9.0548 26 8 3.5203 -3.3027 9.6956 27 6 2.7681 -2.3072 2.4872 28 7 2.3837 -2.0394 1.2698 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9847 0.8895 2.6753 37 1 3.5553 -2.8853 4.9496 38 1 2.8870 -1.5522 7.3482 39 1 4.5591 -1.1228 6.9146 40 1 5.4446 -4.1502 5.7836 41 1 6.2336 -2.7376 6.5476 42 1 7.6590 -6.5996 10.4169 43 1 5.2215 -5.0871 9.4567 44 1 6.4968 -3.8630 9.6995 45 1 3.7114 -3.2327 10.6409 46 1 3.1082 -3.2664 2.8488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958585051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:01 Heat of formation + Delta-G solvation = 12.316412 kcal Electronic energy + Delta-G solvation = -26884.994585 eV Core-core repulsion = 23005.019733 eV Total energy + Delta-G solvation = -3879.974852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63212 -39.26499 -38.07288 -36.16328 -35.10977 -34.53401 -32.22137 -30.70097 -30.63215 -29.36871 -27.89529 -27.52291 -25.64950 -24.21628 -23.01489 -22.30351 -20.56700 -20.23969 -20.05883 -19.69960 -18.06987 -16.91293 -16.71149 -15.96922 -15.82803 -15.63232 -15.33074 -15.06050 -14.77565 -14.48733 -14.10540 -13.91649 -13.53028 -13.37337 -13.18053 -12.98695 -12.76062 -12.70419 -12.61738 -12.38538 -11.99549 -11.91845 -11.77062 -11.43353 -11.24971 -11.17510 -10.91373 -10.79034 -10.58446 -10.05686 -9.95770 -9.81277 -9.80153 -9.67905 -9.18834 -9.01798 -8.69480 -8.64176 -6.88849 -5.74568 -3.08925 1.39010 2.01894 2.05608 3.39125 3.39478 3.43649 3.44894 3.53114 3.97336 4.29587 4.45021 4.46638 4.49002 4.57262 4.76474 4.90772 4.95856 5.01627 5.09597 5.13176 5.20668 5.25622 5.28740 5.46558 5.52017 5.52973 5.57106 5.59838 5.72211 5.90573 6.06720 6.10195 6.22380 6.26006 6.40443 6.50837 6.59957 6.64437 6.86307 7.34033 7.41011 7.50660 7.70868 7.75923 8.20535 8.22366 8.40946 9.17026 9.77691 10.42156 11.36970 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002461 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.088390 B =11376.129474 C =12491.943433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.357 5.357 5 C 0.127 3.873 6 C -0.290 4.290 7 C 0.593 3.407 8 O -0.557 6.557 9 N -0.720 5.720 10 C 0.136 3.864 11 C -0.108 4.108 12 H 0.089 0.911 13 C 0.142 3.858 14 N -0.602 5.602 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.152 3.848 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.566 6.566 27 C 0.082 3.918 28 N -0.298 5.298 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.184 0.816 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.376 0.624 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 13.557 -16.378 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.137 5.137 5 C -0.025 4.025 6 C -0.305 4.305 7 C 0.381 3.619 8 O -0.436 6.436 9 N -0.370 5.370 10 C 0.013 3.987 11 C -0.127 4.127 12 H 0.108 0.892 13 C 0.015 3.985 14 N -0.330 5.330 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.026 3.974 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.371 6.371 27 C -0.106 4.106 28 N -0.117 5.117 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.201 0.799 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.222 0.778 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.454 13.663 -17.739 26.122 hybrid contribution 1.232 -0.813 1.060 1.818 sum -12.222 12.850 -16.679 24.345 Atomic orbital electron populations 1.22259 0.93236 1.03570 1.03375 1.21398 0.95092 0.92922 0.85592 1.22247 1.02636 0.93737 1.04026 1.48777 1.48911 1.07624 1.08397 1.22838 0.95525 0.99558 0.84534 1.20300 1.19551 0.94734 0.95946 1.17206 0.76359 0.83802 0.84553 1.90753 1.54924 1.26491 1.71473 1.45783 1.66972 1.12730 1.11509 1.21339 1.00405 0.97327 0.79662 1.22608 0.99152 0.96206 0.94781 0.89235 1.21606 0.90050 0.93616 0.93207 1.44300 1.46686 1.39892 1.02085 1.19023 1.13548 1.09460 0.93784 0.90301 1.24821 1.00273 0.99907 0.95443 1.69934 1.45832 1.42405 0.98856 0.86167 0.81203 0.81338 0.76859 1.21136 1.21595 1.21110 1.21825 0.93064 0.94381 0.88090 1.23123 0.87113 0.98521 0.88987 0.92536 1.86426 1.35302 1.94918 1.20465 1.24128 0.97125 0.98981 0.90325 1.77177 1.21108 0.92730 1.20670 0.91414 0.91662 0.90200 0.87542 0.91193 0.89657 0.91210 0.79860 0.76533 0.91231 0.91440 0.93941 0.95868 0.93643 0.92457 0.93663 0.77771 0.79226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.52 37.16 0.35 -0.47 16 2 C 0.15 0.91 3.91 -67.93 -0.27 0.65 16 3 C -0.17 -0.70 8.83 37.16 0.33 -0.37 16 4 N -0.36 -3.43 3.49 -54.31 -0.19 -3.62 16 5 C 0.13 1.31 10.39 -16.56 -0.17 1.14 16 6 C -0.29 -3.55 6.13 -105.06 -0.64 -4.19 16 7 C 0.59 8.65 7.81 -12.52 -0.10 8.55 16 8 O -0.56 -9.86 16.90 5.27 0.09 -9.77 16 9 N -0.72 -9.80 5.40 -61.38 -0.33 -10.13 16 10 C 0.14 2.09 5.12 -4.04 -0.02 2.07 16 11 C -0.11 -1.87 2.83 -88.47 -0.25 -2.12 16 12 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 13 C 0.14 2.80 6.41 -2.53 -0.02 2.78 16 14 N -0.60 -15.09 3.39 -170.07 -0.58 -15.67 16 15 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 19 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.15 3.61 5.15 -3.06 -0.02 3.59 16 24 C 0.08 1.54 3.80 -24.90 -0.09 1.45 16 25 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 26 O -0.57 -9.89 13.39 -35.23 -0.47 -10.36 16 27 C 0.08 0.91 11.50 -16.98 -0.20 0.72 16 28 N -0.30 -3.47 12.50 30.86 0.39 -3.08 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.28 7.13 -51.93 -0.37 -0.09 16 36 H 0.18 1.54 7.24 -52.49 -0.38 1.16 16 37 H 0.40 4.67 7.29 -40.82 -0.30 4.38 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.06 1.54 7.30 -51.93 -0.38 1.16 16 44 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 45 H 0.38 5.09 9.12 45.56 0.42 5.51 16 46 H 0.19 1.62 7.50 -52.49 -0.39 1.22 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -35.22 380.06 -7.56 -42.78 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.40 Total: 6.46 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.34 Total: 7.00 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.14 Total: -58.74 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.38 Total: -20.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.22 -7.56 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958585051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.095 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds