Wall clock time and date at job start Tue Mar 31 2020 13:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47341 * 2 1 4 4 N 1.46506 * 109.46671 * 119.99903 * 2 1 3 5 5 C 1.34259 * 125.74995 * 275.30464 * 4 2 1 6 6 C 1.38045 * 107.41309 * 180.11417 * 5 4 2 7 7 C 1.47432 * 126.41742 * 179.87359 * 6 5 4 8 8 O 1.21604 * 119.99434 * 359.71098 * 7 6 5 9 9 N 1.34770 * 120.00253 * 179.70823 * 7 6 5 10 10 C 1.46503 * 119.99968 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47329 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.91549 * 302.55831 * 11 10 9 13 13 C 1.54917 * 111.00242 * 66.45559 * 11 10 9 14 14 N 1.47421 * 104.83002 * 155.08843 * 13 11 10 15 15 C 1.36936 * 125.64616 * 155.84135 * 14 13 11 16 16 H 1.08001 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.38822 * 119.99936 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99690 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00114 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46839 * 60.00190 * 19 17 15 21 21 H 1.48493 * 109.47110 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47126 * 300.00275 * 19 17 15 23 23 C 1.47021 * 108.70450 * 335.86832 * 14 13 11 24 24 C 1.54326 * 107.27002 * 1.06211 * 23 14 13 25 25 H 1.09000 * 110.72348 * 263.82382 * 24 23 14 26 26 O 1.42908 * 110.71556 * 140.55446 * 24 23 14 27 27 C 1.41294 * 107.17090 * 359.60637 * 6 5 4 28 28 N 1.30442 * 108.02285 * 0.24636 * 27 6 5 29 29 H 1.08997 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47036 * 300.00242 * 1 2 3 31 31 H 1.08999 * 109.46896 * 60.00211 * 1 2 3 32 32 H 1.08995 * 109.47036 * 239.99758 * 2 1 3 33 33 H 1.08998 * 109.47176 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46953 * 299.99754 * 3 2 1 35 35 H 1.09003 * 109.47092 * 59.99572 * 3 2 1 36 36 H 1.07994 * 126.29962 * 359.96801 * 5 4 2 37 37 H 0.96996 * 120.00278 * 0.02562 * 9 7 6 38 38 H 1.09006 * 109.46676 * 60.00540 * 10 9 7 39 39 H 1.08999 * 109.47518 * 300.00805 * 10 9 7 40 40 H 1.09002 * 110.36419 * 273.92650 * 13 11 10 41 41 H 1.08994 * 110.36559 * 36.13399 * 13 11 10 42 42 H 0.97002 * 119.99882 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.88310 * 120.48076 * 23 14 13 44 44 H 1.09002 * 109.88672 * 241.49116 * 23 14 13 45 45 H 0.96698 * 113.99690 * 66.48080 * 26 24 23 46 46 H 1.08001 * 125.99108 * 180.23784 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1848 -0.1376 2.4083 6 6 2.6618 -1.1225 3.2498 7 6 2.9922 -0.9686 4.6783 8 8 2.8554 0.1109 5.2211 9 7 3.4459 -2.0243 5.3826 10 6 3.7747 -1.8712 6.8020 11 6 4.2635 -3.2095 7.3595 12 1 3.5132 -3.9874 7.2179 13 6 5.6140 -3.6177 6.7195 14 7 6.2468 -4.5083 7.7093 15 6 7.1886 -5.4640 7.4359 16 1 7.5270 -5.6140 6.4213 17 6 7.7084 -6.2401 8.4628 18 7 7.2956 -6.0576 9.6992 19 14 8.9926 -7.5443 8.0898 20 1 10.1876 -6.9033 7.4844 21 1 9.3820 -8.2297 9.3482 22 1 8.4287 -8.5369 7.1401 23 6 5.6987 -4.2009 9.0385 24 6 4.6545 -3.0795 8.8553 25 1 5.0974 -2.1037 9.0548 26 8 3.5203 -3.3027 9.6956 27 6 2.7681 -2.3072 2.4872 28 7 2.3837 -2.0394 1.2698 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9847 0.8895 2.6753 37 1 3.5553 -2.8853 4.9496 38 1 2.8870 -1.5522 7.3482 39 1 4.5591 -1.1228 6.9146 40 1 5.4446 -4.1502 5.7836 41 1 6.2336 -2.7376 6.5476 42 1 7.6590 -6.5996 10.4169 43 1 5.2215 -5.0871 9.4567 44 1 6.4968 -3.8630 9.6995 45 1 3.7114 -3.2327 10.6409 46 1 3.1082 -3.2664 2.8488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958585051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:00 Heat of formation + Delta-G solvation = -14.603139 kcal Electronic energy + Delta-G solvation = -26886.161904 eV Core-core repulsion = 23005.019733 eV Total energy + Delta-G solvation = -3881.142171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43990 -40.51211 -39.55714 -36.71760 -36.61846 -36.00010 -33.98369 -31.86708 -31.45513 -30.71293 -29.22854 -28.24570 -27.26865 -25.59796 -24.07108 -23.24313 -22.19982 -21.47196 -20.98158 -20.85692 -19.13504 -18.70361 -18.15313 -17.13596 -16.90494 -16.57706 -16.54866 -16.17955 -15.91654 -15.65567 -15.57621 -15.02843 -14.66932 -14.58509 -14.36888 -14.00781 -13.88092 -13.81693 -13.56619 -13.21148 -13.16772 -13.09221 -13.07891 -12.67593 -12.43025 -12.39230 -12.31773 -12.29751 -11.95720 -11.87334 -11.77183 -11.44382 -10.95084 -10.76129 -10.70256 -10.58447 -10.12993 -9.62856 -8.91640 -7.84693 -5.20959 0.54562 1.16815 1.35340 1.47396 1.50459 1.56507 2.29440 2.49004 2.50145 3.26099 3.35898 3.42311 3.62095 3.73977 3.76326 3.86478 3.92033 3.93968 4.06787 4.13438 4.18709 4.36209 4.44239 4.49122 4.61858 4.63272 4.70364 4.73154 4.79175 4.83081 4.88360 4.94352 5.00597 5.15649 5.20313 5.32754 5.40218 5.43351 5.49488 5.51899 5.73308 5.90805 6.18282 6.50876 6.66507 6.91366 7.08787 7.31034 7.75902 8.39421 9.25288 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002461 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.088390 B =11376.129474 C =12491.943433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.351 5.351 5 C 0.134 3.866 6 C -0.315 4.315 7 C 0.596 3.404 8 O -0.592 6.592 9 N -0.713 5.713 10 C 0.150 3.850 11 C -0.089 4.089 12 H 0.086 0.914 13 C 0.140 3.860 14 N -0.625 5.625 15 C -0.242 4.242 16 H 0.087 0.913 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.276 1.276 23 C 0.161 3.839 24 C 0.096 3.904 25 H 0.075 0.925 26 O -0.569 6.569 27 C 0.083 3.917 28 N -0.322 5.322 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.202 0.798 37 H 0.411 0.589 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.247 0.753 43 H 0.019 0.981 44 H 0.012 0.988 45 H 0.393 0.607 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 14.558 -18.520 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.130 5.130 5 C -0.019 4.019 6 C -0.330 4.330 7 C 0.385 3.615 8 O -0.475 6.475 9 N -0.364 5.364 10 C 0.026 3.974 11 C -0.109 4.109 12 H 0.105 0.895 13 C 0.015 3.985 14 N -0.352 5.352 15 C -0.371 4.371 16 H 0.105 0.895 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.808 3.192 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.202 1.202 23 C 0.035 3.965 24 C 0.036 3.964 25 H 0.093 0.907 26 O -0.376 6.376 27 C -0.104 4.104 28 N -0.142 5.142 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.219 0.781 37 H 0.247 0.753 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.031 0.969 45 H 0.242 0.758 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.220 14.661 -19.934 28.540 hybrid contribution 1.418 -1.076 1.655 2.431 sum -12.802 13.585 -18.278 26.126 Atomic orbital electron populations 1.22236 0.92208 1.02858 1.04573 1.21783 0.95885 0.93762 0.84380 1.22255 1.02005 0.92481 1.05426 1.49129 1.47760 1.07048 1.09078 1.23132 0.94187 1.00031 0.84525 1.20204 1.21744 0.95985 0.95020 1.17467 0.75555 0.83192 0.85308 1.90729 1.56617 1.27766 1.72349 1.45664 1.66688 1.13241 1.10810 1.21071 1.00138 0.95616 0.80564 1.22408 0.97704 0.97205 0.93572 0.89532 1.21775 0.90828 0.93000 0.92942 1.44609 1.46706 1.40224 1.03683 1.19460 1.13730 1.09701 0.94167 0.89482 1.25678 1.02651 1.02333 0.95437 1.70160 1.47101 1.43309 0.99548 0.85137 0.78913 0.78823 0.76371 1.20269 1.22272 1.20188 1.21593 0.93108 0.94496 0.87289 1.22897 0.86188 0.97118 0.90202 0.90677 1.86395 1.34481 1.94834 1.21924 1.24431 0.96543 0.99476 0.89964 1.77138 1.21920 0.94068 1.21036 0.93027 0.91839 0.87626 0.87229 0.92130 0.87223 0.90869 0.78134 0.75316 0.91322 0.91669 0.92356 0.95259 0.94420 0.96285 0.96932 0.75789 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.52 71.98 0.69 -0.58 16 2 C 0.14 1.43 3.91 44.99 0.18 1.61 16 3 C -0.16 -0.97 8.83 71.98 0.64 -0.33 16 4 N -0.35 -6.20 3.49 -325.74 -1.14 -7.34 16 5 C 0.13 2.59 10.39 84.28 0.88 3.46 16 6 C -0.31 -7.29 6.13 -20.15 -0.12 -7.41 16 7 C 0.60 16.64 7.81 86.67 0.68 17.32 16 8 O -0.59 -20.42 16.90 -4.04 -0.07 -20.49 16 9 N -0.71 -18.29 5.40 -466.37 -2.52 -20.80 16 10 C 0.15 4.35 5.12 86.38 0.44 4.79 16 11 C -0.09 -2.97 2.83 -9.40 -0.03 -3.00 16 12 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 13 C 0.14 5.35 6.41 86.86 0.56 5.90 16 14 N -0.63 -31.46 3.39 -691.98 -2.35 -33.81 16 15 C -0.24 -13.33 10.28 84.04 0.86 -12.46 16 16 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 17 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 18 N -0.95 -57.00 10.31 21.66 0.22 -56.77 16 19 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 C 0.16 7.84 5.15 86.73 0.45 8.28 16 24 C 0.10 3.53 3.80 31.78 0.12 3.65 16 25 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 26 O -0.57 -19.28 13.39 -148.98 -1.99 -21.27 16 27 C 0.08 1.73 11.50 85.65 0.99 2.72 16 28 N -0.32 -7.10 12.50 -56.27 -0.70 -7.81 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.07 0.40 7.13 -2.39 -0.02 0.39 16 36 H 0.20 3.01 7.24 -2.91 -0.02 2.99 16 37 H 0.41 8.81 7.29 -92.71 -0.68 8.13 16 38 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.03 1.12 8.00 -2.39 -0.02 1.10 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 43 H 0.02 1.06 7.30 -2.39 -0.02 1.04 16 44 H 0.01 0.68 7.50 -2.39 -0.02 0.66 16 45 H 0.39 10.29 9.12 -74.06 -0.68 9.62 16 46 H 0.21 3.20 7.50 -2.91 -0.02 3.18 16 Total: -1.00 -76.92 380.06 -0.09 -77.01 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.35 Total: 23.23 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 6.78 Total: 20.58 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -6.49 Total: -126.53 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -2.06 Total: -41.76 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.92 -0.09 -77.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958585051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.408 kcal (2) G-P(sol) polarization free energy of solvation -76.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds