Wall clock time and date at job start Tue Mar 31 2020 13:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47044 * 2 1 4 4 N 1.46495 * 109.46821 * 119.99734 * 2 1 3 5 5 C 1.34261 * 125.75405 * 275.30724 * 4 2 1 6 6 C 1.38048 * 107.41627 * 180.11694 * 5 4 2 7 7 C 1.47431 * 126.41709 * 179.87653 * 6 5 4 8 8 O 1.21602 * 119.99845 * 359.69982 * 7 6 5 9 9 N 1.34775 * 119.99849 * 179.70917 * 7 6 5 10 10 C 1.46500 * 119.99538 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47149 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.77535 * 51.76040 * 11 10 9 13 13 C 1.54315 * 110.71722 * 288.52141 * 11 10 9 14 14 N 1.47023 * 107.27241 * 219.44307 * 13 11 10 15 15 C 1.36933 * 125.65507 * 178.99274 * 14 13 11 16 16 H 1.08004 * 119.99383 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00263 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00277 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99805 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47177 * 59.99668 * 19 17 15 21 21 H 1.48505 * 109.46838 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46722 * 299.99425 * 19 17 15 23 23 C 1.47426 * 108.69981 * 358.93706 * 14 13 11 24 24 C 1.54907 * 104.82942 * 24.13288 * 23 14 13 25 25 H 1.09005 * 111.04094 * 81.08152 * 24 23 14 26 26 O 1.42903 * 111.00431 * 204.90944 * 24 23 14 27 27 C 1.41293 * 107.16775 * 359.60200 * 6 5 4 28 28 N 1.30440 * 108.02455 * 0.24899 * 27 6 5 29 29 H 1.09007 * 109.46993 * 300.00397 * 1 2 3 30 30 H 1.09001 * 109.46874 * 59.99714 * 1 2 3 31 31 H 1.08995 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46945 * 240.00072 * 2 1 3 33 33 H 1.09001 * 109.47172 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46883 * 299.99511 * 3 2 1 35 35 H 1.08995 * 109.47191 * 59.99816 * 3 2 1 36 36 H 1.07999 * 126.29452 * 359.95911 * 5 4 2 37 37 H 0.96993 * 120.00285 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47659 * 59.99915 * 10 9 7 39 39 H 1.09007 * 109.46961 * 299.99408 * 10 9 7 40 40 H 1.09003 * 109.88697 * 338.85781 * 13 11 10 41 41 H 1.09000 * 109.88663 * 100.02422 * 13 11 10 42 42 H 0.96999 * 120.00355 * 179.97438 * 18 17 15 43 43 H 1.08994 * 110.37345 * 265.29076 * 23 14 13 44 44 H 1.09007 * 110.36591 * 142.96519 * 23 14 13 45 45 H 0.96700 * 114.00311 * 292.19952 * 26 24 23 46 46 H 1.08006 * 125.98905 * 180.24661 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1848 -0.1375 2.4082 6 6 2.6619 -1.1224 3.2498 7 6 2.9923 -0.9685 4.6783 8 8 2.8555 0.1110 5.2211 9 7 3.4461 -2.0243 5.3825 10 6 3.7749 -1.8712 6.8019 11 6 4.2627 -3.2099 7.3597 12 1 5.0589 -3.6204 6.7387 13 6 3.0935 -4.2097 7.4801 14 7 3.2828 -4.9539 8.7338 15 6 2.4478 -5.9242 9.2200 16 1 1.5609 -6.1993 8.6684 17 6 2.7412 -6.5541 10.4216 18 7 3.8222 -6.2192 11.0935 19 14 1.6016 -7.8773 11.0850 20 1 1.5150 -8.9918 10.1074 21 1 2.1348 -8.3895 12.3730 22 1 0.2495 -7.3028 11.3020 23 6 4.5213 -4.4833 9.3804 24 6 4.7378 -3.0523 8.8282 25 1 4.1217 -2.3291 9.3628 26 8 6.1178 -2.6852 8.8836 27 6 2.7682 -2.3071 2.4871 28 7 2.3838 -2.0393 1.2698 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.9848 0.8896 2.6752 37 1 3.5549 -2.8854 4.9496 38 1 2.8873 -1.5522 7.3482 39 1 4.5594 -1.1228 6.9144 40 1 2.1463 -3.6709 7.5082 41 1 3.1057 -4.8980 6.6350 42 1 4.0270 -6.6592 11.9334 43 1 5.3589 -5.1256 9.1085 44 1 4.3978 -4.4574 10.4631 45 1 6.4598 -2.5752 9.7813 46 1 3.1082 -3.2663 2.8488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958585052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:04 Heat of formation + Delta-G solvation = 13.506627 kcal Electronic energy + Delta-G solvation = -26865.410442 eV Core-core repulsion = 22985.487202 eV Total energy + Delta-G solvation = -3879.923240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.63789 -39.26388 -38.05535 -36.16655 -35.10774 -34.55134 -32.25827 -30.70591 -30.63381 -29.37570 -27.89526 -27.50623 -25.64654 -24.22183 -23.00635 -22.30291 -20.62339 -20.24113 -20.02384 -19.63692 -18.05543 -16.99502 -16.74373 -15.95937 -15.82711 -15.61571 -15.33793 -15.06057 -14.81778 -14.45803 -14.08846 -13.86983 -13.49534 -13.37908 -13.16524 -12.97818 -12.81589 -12.71137 -12.67438 -12.34569 -11.95275 -11.91236 -11.77508 -11.51848 -11.25574 -11.19683 -10.91749 -10.78135 -10.61829 -10.06458 -9.96412 -9.81985 -9.79094 -9.61075 -9.13305 -9.01843 -8.69844 -8.68920 -6.89577 -5.70128 -3.12546 1.38648 2.01234 2.04926 3.38569 3.39460 3.43026 3.44233 3.53271 3.96875 4.29351 4.42675 4.46381 4.48575 4.56295 4.74533 4.90692 4.95747 5.01321 5.10212 5.14343 5.20476 5.27445 5.28184 5.45599 5.51525 5.54362 5.58021 5.59982 5.71506 5.98645 6.07736 6.12238 6.21219 6.26841 6.42659 6.54845 6.59447 6.67801 6.85664 7.33178 7.37480 7.55507 7.70707 7.75763 8.18248 8.30684 8.41245 9.16127 9.77042 10.40425 11.33843 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.002420 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.916908 B =11565.589085 C =12587.301442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.357 5.357 5 C 0.127 3.873 6 C -0.290 4.290 7 C 0.593 3.407 8 O -0.556 6.556 9 N -0.720 5.720 10 C 0.136 3.864 11 C -0.105 4.105 12 H 0.086 0.914 13 C 0.141 3.859 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.924 5.924 19 Si 0.917 3.083 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.129 3.871 24 C 0.081 3.919 25 H 0.061 0.939 26 O -0.569 6.569 27 C 0.082 3.918 28 N -0.298 5.298 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.185 0.815 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.022 0.978 44 H 0.109 0.891 45 H 0.377 0.623 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 14.042 -20.334 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.137 5.137 5 C -0.024 4.024 6 C -0.305 4.305 7 C 0.380 3.620 8 O -0.435 6.435 9 N -0.370 5.370 10 C 0.012 3.988 11 C -0.124 4.124 12 H 0.104 0.896 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.352 4.352 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.003 3.997 24 C 0.020 3.980 25 H 0.079 0.921 26 O -0.374 6.374 27 C -0.106 4.106 28 N -0.117 5.117 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.202 0.798 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.126 0.874 45 H 0.223 0.777 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.585 14.221 -21.714 26.085 hybrid contribution -0.333 -0.920 1.530 1.816 sum -2.918 13.301 -20.184 24.348 Atomic orbital electron populations 1.22264 0.93202 1.03617 1.03401 1.21398 0.95132 0.92899 0.85561 1.22247 1.02575 0.93757 1.04055 1.48772 1.48914 1.07603 1.08410 1.22844 0.95476 0.99591 0.84527 1.20304 1.19548 0.94722 0.95931 1.17210 0.76371 0.83826 0.84554 1.90756 1.54789 1.26527 1.71470 1.45794 1.67117 1.12615 1.11501 1.21411 1.00400 0.97298 0.79654 1.22403 0.98684 0.94558 0.96741 0.89564 1.21386 0.94548 0.92190 0.90372 1.44317 1.25306 1.43133 1.20108 1.19045 1.02469 1.10763 1.02908 0.90335 1.24801 0.97952 1.00250 0.97648 1.69751 1.26109 1.44688 1.16660 0.86121 0.79786 0.81295 0.78107 1.21159 1.21544 1.21092 1.22538 0.88055 0.88033 1.01069 1.23313 0.81283 0.98606 0.94767 0.92130 1.86371 1.26025 1.92166 1.32820 1.24114 0.97211 0.98928 0.90338 1.77169 1.21092 0.92746 1.20709 0.91629 0.90196 0.91383 0.87559 0.91236 0.89655 0.91187 0.79847 0.76630 0.91267 0.91202 0.95251 0.95724 0.93591 0.96024 0.87364 0.77675 0.79263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.52 37.16 0.35 -0.50 16 2 C 0.15 0.91 3.91 -67.93 -0.27 0.65 16 3 C -0.17 -0.69 8.83 37.16 0.33 -0.36 16 4 N -0.36 -3.42 3.49 -54.31 -0.19 -3.61 16 5 C 0.13 1.32 10.40 -16.56 -0.17 1.15 16 6 C -0.29 -3.56 6.13 -105.06 -0.64 -4.20 16 7 C 0.59 8.74 7.81 -12.52 -0.10 8.64 16 8 O -0.56 -9.99 16.90 5.28 0.09 -9.90 16 9 N -0.72 -9.89 5.46 -61.38 -0.34 -10.23 16 10 C 0.14 2.13 5.02 -4.04 -0.02 2.11 16 11 C -0.10 -1.82 2.70 -88.79 -0.24 -2.06 16 12 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.14 2.84 6.75 -3.07 -0.02 2.82 16 14 N -0.60 -15.14 3.39 -170.08 -0.58 -15.72 16 15 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 16 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 19 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.13 3.06 5.62 -2.53 -0.01 3.05 16 24 C 0.08 1.53 3.88 -24.59 -0.10 1.44 16 25 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 26 O -0.57 -9.85 13.47 -35.23 -0.47 -10.33 16 27 C 0.08 0.90 11.50 -16.98 -0.20 0.71 16 28 N -0.30 -3.45 12.50 30.86 0.39 -3.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.07 0.28 7.13 -51.93 -0.37 -0.09 16 36 H 0.18 1.56 7.24 -52.49 -0.38 1.18 16 37 H 0.40 4.61 7.42 -40.82 -0.30 4.31 16 38 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.03 0.60 7.68 -51.93 -0.40 0.20 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.11 2.86 5.88 -51.92 -0.31 2.56 16 45 H 0.38 5.07 9.12 45.56 0.42 5.49 16 46 H 0.19 1.57 7.50 -52.48 -0.39 1.18 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -34.84 379.52 -7.52 -42.36 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.34 Total: 7.13 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.33 Total: 6.73 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.16 Total: -58.54 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.39 Total: -20.23 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.84 -7.52 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958585052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.867 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds