Wall clock time and date at job start Tue Mar 31 2020 13:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47044 * 2 1 4 4 N 1.46495 * 109.46821 * 119.99734 * 2 1 3 5 5 C 1.34261 * 125.75405 * 275.30724 * 4 2 1 6 6 C 1.38048 * 107.41627 * 180.11694 * 5 4 2 7 7 C 1.47431 * 126.41709 * 179.87653 * 6 5 4 8 8 O 1.21602 * 119.99845 * 359.69982 * 7 6 5 9 9 N 1.34775 * 119.99849 * 179.70917 * 7 6 5 10 10 C 1.46500 * 119.99538 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47149 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.77535 * 51.76040 * 11 10 9 13 13 C 1.54315 * 110.71722 * 288.52141 * 11 10 9 14 14 N 1.47023 * 107.27241 * 219.44307 * 13 11 10 15 15 C 1.36933 * 125.65507 * 178.99274 * 14 13 11 16 16 H 1.08004 * 119.99383 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00263 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00277 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99805 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47177 * 59.99668 * 19 17 15 21 21 H 1.48505 * 109.46838 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46722 * 299.99425 * 19 17 15 23 23 C 1.47426 * 108.69981 * 358.93706 * 14 13 11 24 24 C 1.54907 * 104.82942 * 24.13288 * 23 14 13 25 25 H 1.09005 * 111.04094 * 81.08152 * 24 23 14 26 26 O 1.42903 * 111.00431 * 204.90944 * 24 23 14 27 27 C 1.41293 * 107.16775 * 359.60200 * 6 5 4 28 28 N 1.30440 * 108.02455 * 0.24899 * 27 6 5 29 29 H 1.09007 * 109.46993 * 300.00397 * 1 2 3 30 30 H 1.09001 * 109.46874 * 59.99714 * 1 2 3 31 31 H 1.08995 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46945 * 240.00072 * 2 1 3 33 33 H 1.09001 * 109.47172 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46883 * 299.99511 * 3 2 1 35 35 H 1.08995 * 109.47191 * 59.99816 * 3 2 1 36 36 H 1.07999 * 126.29452 * 359.95911 * 5 4 2 37 37 H 0.96993 * 120.00285 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47659 * 59.99915 * 10 9 7 39 39 H 1.09007 * 109.46961 * 299.99408 * 10 9 7 40 40 H 1.09003 * 109.88697 * 338.85781 * 13 11 10 41 41 H 1.09000 * 109.88663 * 100.02422 * 13 11 10 42 42 H 0.96999 * 120.00355 * 179.97438 * 18 17 15 43 43 H 1.08994 * 110.37345 * 265.29076 * 23 14 13 44 44 H 1.09007 * 110.36591 * 142.96519 * 23 14 13 45 45 H 0.96700 * 114.00311 * 292.19952 * 26 24 23 46 46 H 1.08006 * 125.98905 * 180.24661 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1848 -0.1375 2.4082 6 6 2.6619 -1.1224 3.2498 7 6 2.9923 -0.9685 4.6783 8 8 2.8555 0.1110 5.2211 9 7 3.4461 -2.0243 5.3825 10 6 3.7749 -1.8712 6.8019 11 6 4.2627 -3.2099 7.3597 12 1 5.0589 -3.6204 6.7387 13 6 3.0935 -4.2097 7.4801 14 7 3.2828 -4.9539 8.7338 15 6 2.4478 -5.9242 9.2200 16 1 1.5609 -6.1993 8.6684 17 6 2.7412 -6.5541 10.4216 18 7 3.8222 -6.2192 11.0935 19 14 1.6016 -7.8773 11.0850 20 1 1.5150 -8.9918 10.1074 21 1 2.1348 -8.3895 12.3730 22 1 0.2495 -7.3028 11.3020 23 6 4.5213 -4.4833 9.3804 24 6 4.7378 -3.0523 8.8282 25 1 4.1217 -2.3291 9.3628 26 8 6.1178 -2.6852 8.8836 27 6 2.7682 -2.3071 2.4871 28 7 2.3838 -2.0393 1.2698 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.9848 0.8896 2.6752 37 1 3.5549 -2.8854 4.9496 38 1 2.8873 -1.5522 7.3482 39 1 4.5594 -1.1228 6.9144 40 1 2.1463 -3.6709 7.5082 41 1 3.1057 -4.8980 6.6350 42 1 4.0270 -6.6592 11.9334 43 1 5.3589 -5.1256 9.1085 44 1 4.3978 -4.4574 10.4631 45 1 6.4598 -2.5752 9.7813 46 1 3.1082 -3.2663 2.8488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958585052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:03 Heat of formation + Delta-G solvation = -12.984677 kcal Electronic energy + Delta-G solvation = -26866.559191 eV Core-core repulsion = 22985.487202 eV Total energy + Delta-G solvation = -3881.071989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44767 -40.52429 -39.55349 -36.72331 -36.62484 -36.02442 -34.01755 -31.87273 -31.46203 -30.72494 -29.21596 -28.25040 -27.27942 -25.60126 -24.06385 -23.24918 -22.26379 -21.41689 -20.97821 -20.84710 -19.12180 -18.77946 -18.22614 -17.09558 -16.92487 -16.64060 -16.57495 -16.17405 -15.87630 -15.64199 -15.45102 -15.05835 -14.72100 -14.67465 -14.29654 -14.06225 -13.85664 -13.78113 -13.62162 -13.24457 -13.18771 -13.10026 -13.08165 -12.71642 -12.41446 -12.36522 -12.32900 -12.31429 -11.95885 -11.87319 -11.84800 -11.35913 -10.96964 -10.75688 -10.71027 -10.59043 -10.14842 -9.63928 -8.90721 -7.78316 -5.23410 0.53498 1.16069 1.34600 1.48053 1.50872 1.57122 2.28147 2.48110 2.49346 3.22798 3.32250 3.41451 3.65004 3.75507 3.76437 3.85651 3.91071 3.96002 4.06238 4.12331 4.14614 4.35415 4.46467 4.49294 4.61399 4.63121 4.68930 4.71935 4.78750 4.84413 4.87946 4.93951 5.00867 5.15293 5.19793 5.29780 5.39700 5.44341 5.48349 5.50509 5.75666 5.89957 6.26369 6.50004 6.65681 6.91044 7.09059 7.30099 7.75502 8.38287 9.23382 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.002420 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.916908 B =11565.589085 C =12587.301442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.351 5.351 5 C 0.134 3.866 6 C -0.315 4.315 7 C 0.595 3.405 8 O -0.593 6.593 9 N -0.713 5.713 10 C 0.150 3.850 11 C -0.087 4.087 12 H 0.094 0.906 13 C 0.139 3.861 14 N -0.624 5.624 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.277 1.277 23 C 0.134 3.866 24 C 0.096 3.904 25 H 0.067 0.933 26 O -0.569 6.569 27 C 0.084 3.916 28 N -0.322 5.322 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.201 0.799 37 H 0.411 0.589 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.248 0.752 43 H -0.008 1.008 44 H 0.079 0.921 45 H 0.394 0.606 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 14.906 -22.274 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.221 4.221 4 N -0.130 5.130 5 C -0.019 4.019 6 C -0.330 4.330 7 C 0.384 3.616 8 O -0.475 6.475 9 N -0.364 5.364 10 C 0.026 3.974 11 C -0.106 4.106 12 H 0.112 0.888 13 C 0.015 3.985 14 N -0.351 5.351 15 C -0.368 4.368 16 H 0.102 0.898 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.203 1.203 23 C 0.008 3.992 24 C 0.035 3.965 25 H 0.085 0.915 26 O -0.375 6.375 27 C -0.104 4.104 28 N -0.141 5.141 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.010 0.990 44 H 0.097 0.903 45 H 0.243 0.757 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.315 15.078 -23.708 28.292 hybrid contribution -0.107 -1.152 2.049 2.353 sum -3.423 13.926 -21.659 25.976 Atomic orbital electron populations 1.22244 0.92344 1.02834 1.04544 1.21783 0.95790 0.93808 0.84394 1.22255 1.02058 0.92435 1.05396 1.49125 1.47755 1.07052 1.09061 1.23129 0.94167 1.00045 0.84562 1.20196 1.21788 0.96051 0.94923 1.17497 0.75537 0.83201 0.85367 1.90731 1.56544 1.27877 1.72393 1.45659 1.66809 1.13202 1.10682 1.21118 0.99851 0.95853 0.80613 1.22229 0.97728 0.94738 0.95915 0.88824 1.21534 0.95732 0.92524 0.88753 1.44604 1.25278 1.43246 1.21990 1.19431 1.02965 1.11254 1.03140 0.89834 1.25638 0.99556 1.02607 0.98150 1.69997 1.27585 1.45609 1.16687 0.85115 0.78086 0.78803 0.77096 1.20443 1.22005 1.20266 1.22315 0.86833 0.90501 0.99562 1.22992 0.82414 0.95534 0.95530 0.91475 1.86345 1.24920 1.91702 1.34579 1.24438 0.96563 0.99427 0.89930 1.77133 1.21872 0.94025 1.21065 0.91948 0.87593 0.93072 0.87102 0.91999 0.87219 0.90961 0.78206 0.75242 0.92210 0.91261 0.94993 0.94490 0.94238 0.98970 0.90345 0.75679 0.77283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.52 71.98 0.69 -0.66 16 2 C 0.14 1.44 3.91 44.99 0.18 1.61 16 3 C -0.16 -0.95 8.83 71.98 0.64 -0.31 16 4 N -0.35 -6.20 3.49 -325.74 -1.14 -7.34 16 5 C 0.13 2.61 10.40 84.28 0.88 3.49 16 6 C -0.31 -7.34 6.13 -20.15 -0.12 -7.47 16 7 C 0.59 16.94 7.81 86.67 0.68 17.62 16 8 O -0.59 -20.96 16.90 -4.04 -0.07 -21.02 16 9 N -0.71 -18.57 5.46 -466.35 -2.55 -21.12 16 10 C 0.15 4.49 5.02 86.38 0.43 4.93 16 11 C -0.09 -2.91 2.70 -9.61 -0.03 -2.94 16 12 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 13 C 0.14 5.49 6.75 86.73 0.59 6.08 16 14 N -0.62 -31.59 3.39 -692.00 -2.35 -33.94 16 15 C -0.24 -13.21 10.27 84.03 0.86 -12.35 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 18 N -0.95 -55.76 10.09 21.65 0.22 -55.54 16 19 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 C 0.13 6.49 5.62 86.85 0.49 6.98 16 24 C 0.10 3.59 3.88 31.98 0.12 3.72 16 25 H 0.07 2.46 8.05 -2.38 -0.02 2.44 16 26 O -0.57 -18.96 13.47 -148.98 -2.01 -20.97 16 27 C 0.08 1.73 11.50 85.65 0.99 2.71 16 28 N -0.32 -7.02 12.50 -56.27 -0.70 -7.73 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.07 0.41 7.13 -2.39 -0.02 0.39 16 36 H 0.20 3.08 7.24 -2.91 -0.02 3.06 16 37 H 0.41 8.74 7.42 -92.71 -0.69 8.05 16 38 H 0.06 1.94 7.93 -2.39 -0.02 1.92 16 39 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.08 4.29 5.88 -2.38 -0.01 4.28 16 45 H 0.39 10.15 9.12 -74.06 -0.68 9.48 16 46 H 0.21 3.10 7.50 -2.91 -0.02 3.08 16 Total: -1.00 -75.62 379.52 -0.08 -75.71 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.36 Total: 24.63 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.85 Total: 20.11 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -6.52 Total: -125.66 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -2.08 Total: -41.99 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -75.62 -0.08 -75.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958585052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.722 kcal (2) G-P(sol) polarization free energy of solvation -75.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds