Wall clock time and date at job start Tue Mar 31 2020 13:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99963 * 2 1 3 5 5 C 1.34261 * 125.75369 * 85.00735 * 4 2 1 6 6 C 1.38045 * 107.41738 * 179.97438 * 5 4 2 7 7 C 1.47422 * 126.41662 * 180.02562 * 6 5 4 8 8 O 1.21606 * 119.99885 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00210 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99970 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47155 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.88520 * 305.70380 * 11 10 9 13 13 C 1.54912 * 111.00406 * 69.57760 * 11 10 9 14 14 N 1.47428 * 104.83355 * 155.08641 * 13 11 10 15 15 C 1.36933 * 125.65299 * 155.91019 * 14 13 11 16 16 H 1.08005 * 119.99397 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00393 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99693 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00084 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46974 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47020 * 119.99836 * 19 17 15 22 22 H 1.48497 * 109.46953 * 239.99717 * 19 17 15 23 23 C 1.47031 * 108.70074 * 335.87159 * 14 13 11 24 24 C 1.54372 * 107.28538 * 1.09435 * 23 14 13 25 25 H 1.09001 * 110.75594 * 140.50820 * 24 23 14 26 26 O 1.42903 * 110.70460 * 263.79145 * 24 23 14 27 27 C 1.41297 * 107.16886 * 359.97438 * 6 5 4 28 28 N 1.30448 * 108.02259 * 359.73661 * 27 6 5 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 36 36 H 1.08002 * 126.29151 * 359.94741 * 5 4 2 37 37 H 0.97001 * 119.99868 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47016 * 299.99900 * 10 9 7 39 39 H 1.08996 * 109.47692 * 60.00151 * 10 9 7 40 40 H 1.08997 * 110.37146 * 273.92447 * 13 11 10 41 41 H 1.09004 * 110.36390 * 36.24900 * 13 11 10 42 42 H 0.96998 * 119.99538 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.88068 * 120.47408 * 23 14 13 44 44 H 1.08997 * 109.88188 * 241.49171 * 23 14 13 45 45 H 0.96703 * 113.99779 * 293.49591 * 26 24 23 46 46 H 1.07996 * 125.98571 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1904 -0.1362 -2.4068 6 6 2.6634 -1.1222 -3.2493 7 6 2.9956 -0.9679 -4.6773 8 8 2.8588 0.1117 -5.2202 9 7 3.4508 -2.0233 -5.3812 10 6 3.7814 -1.8698 -6.8001 11 6 4.2706 -3.2080 -7.3575 12 1 5.0963 -3.5983 -6.7625 13 6 3.1117 -4.2328 -7.4383 14 7 3.5176 -5.1792 -8.4932 15 6 3.0838 -6.4723 -8.6155 16 1 2.3836 -6.8769 -7.8996 17 6 3.5448 -7.2634 -9.6588 18 7 4.3985 -6.7704 -10.5309 19 14 2.9536 -9.0275 -9.8251 20 1 2.0047 -9.3372 -8.7256 21 1 2.2705 -9.1995 -11.1324 22 1 4.1161 -9.9483 -9.7491 23 6 4.4646 -4.5044 -9.3930 24 6 4.6745 -3.0749 -8.8496 25 1 5.7187 -2.7761 -8.9413 26 8 3.8210 -2.1478 -9.5235 27 6 2.7706 -2.3066 -2.4864 28 7 2.3909 -2.0376 -1.2678 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.9944 0.8920 -2.6727 37 1 3.5595 -2.8845 -4.9482 38 1 2.8943 -1.5511 -7.3474 39 1 4.5656 -1.1210 -6.9116 40 1 2.9971 -4.7518 -6.4867 41 1 2.1825 -3.7337 -7.7134 42 1 4.7203 -7.3231 -11.2602 43 1 5.4138 -5.0401 -9.4014 44 1 4.0530 -4.4638 -10.4015 45 1 4.0315 -2.0284 -10.4598 46 1 3.1120 -3.2654 -2.8477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958585053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:07 Heat of formation + Delta-G solvation = 13.922420 kcal Electronic energy + Delta-G solvation = -26976.998291 eV Core-core repulsion = 23097.093081 eV Total energy + Delta-G solvation = -3879.905210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.61518 -39.22945 -38.10802 -36.15022 -34.85163 -34.47835 -32.13163 -30.68583 -30.60491 -29.33771 -27.88916 -27.66321 -25.59354 -24.22547 -23.01796 -22.28380 -20.52337 -20.21635 -19.98030 -19.59464 -18.01549 -17.29572 -16.47138 -15.88231 -15.80667 -15.48367 -15.28774 -14.82495 -14.80402 -14.43795 -13.99069 -13.76618 -13.66001 -13.41072 -13.20557 -13.03552 -12.79788 -12.68912 -12.59134 -12.55017 -11.94852 -11.81320 -11.75092 -11.35877 -11.23275 -11.17442 -10.81838 -10.59094 -10.42576 -10.07199 -9.99660 -9.80015 -9.79592 -9.63860 -9.14630 -8.97598 -8.65262 -8.63977 -6.84639 -5.73451 -3.06131 1.40930 2.03085 2.07476 3.39231 3.44640 3.45056 3.47302 3.57091 3.98567 4.30574 4.47641 4.48124 4.49977 4.58614 4.75506 4.91823 4.97786 5.05496 5.13123 5.18538 5.21971 5.29013 5.37361 5.43873 5.52718 5.57078 5.59305 5.61448 5.65850 5.96066 6.13090 6.13696 6.23933 6.44003 6.45353 6.57660 6.61414 6.72457 6.94245 7.35340 7.40954 7.50599 7.75339 7.76173 8.22340 8.26732 8.46178 9.19785 9.80512 10.46291 11.38719 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002474 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.390925 B =11315.843748 C =12457.389964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.358 5.358 5 C 0.126 3.874 6 C -0.290 4.290 7 C 0.592 3.408 8 O -0.556 6.556 9 N -0.722 5.722 10 C 0.143 3.857 11 C -0.109 4.109 12 H 0.088 0.912 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.224 4.224 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.153 3.847 24 C 0.082 3.918 25 H 0.057 0.943 26 O -0.563 6.563 27 C 0.082 3.918 28 N -0.298 5.298 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.184 0.816 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.251 0.749 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.375 0.625 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 15.544 19.342 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.137 5.137 5 C -0.025 4.025 6 C -0.305 4.305 7 C 0.380 3.620 8 O -0.435 6.435 9 N -0.372 5.372 10 C 0.020 3.980 11 C -0.129 4.129 12 H 0.107 0.893 13 C 0.019 3.981 14 N -0.330 5.330 15 C -0.352 4.352 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.573 5.573 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.028 3.972 24 C 0.022 3.978 25 H 0.075 0.925 26 O -0.369 6.369 27 C -0.106 4.106 28 N -0.117 5.117 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.201 0.799 37 H 0.232 0.768 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.222 0.778 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.997 15.744 20.710 26.187 hybrid contribution 0.208 -1.249 -1.400 1.888 sum -2.789 14.495 19.310 24.305 Atomic orbital electron populations 1.22259 0.93201 1.03618 1.03387 1.21391 0.95135 0.92880 0.85579 1.22248 1.02556 0.93786 1.04048 1.48768 1.48807 1.07679 1.08484 1.22843 0.95521 0.99563 0.84585 1.20326 1.19555 0.94600 0.95988 1.17201 0.76457 0.83885 0.84506 1.90758 1.54778 1.26547 1.71427 1.45867 1.67044 1.12536 1.11789 1.21146 1.01180 0.96723 0.78963 1.22677 1.00129 0.95038 0.95053 0.89340 1.21582 0.94157 0.90006 0.92383 1.44391 1.51224 1.09302 1.28068 1.19124 1.21143 0.85833 1.09130 0.90318 1.24798 0.99609 0.98608 0.97654 1.69945 1.35225 1.35377 1.16777 0.86022 0.77801 0.84334 0.77492 1.20497 1.21781 1.21789 1.21864 0.94641 0.86801 0.93915 1.23129 0.91733 0.91376 0.91516 0.92536 1.86412 1.59539 1.64297 1.26640 1.24121 0.97265 0.98938 0.90282 1.77172 1.21020 0.92878 1.20670 0.91621 0.91384 0.90215 0.87581 0.91183 0.89673 0.91252 0.79866 0.76750 0.90316 0.91861 0.94505 0.95644 0.93825 0.93010 0.93234 0.77849 0.79259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.52 37.16 0.35 -0.52 16 2 C 0.15 0.93 3.91 -67.93 -0.27 0.66 16 3 C -0.17 -0.70 8.82 37.16 0.33 -0.37 16 4 N -0.36 -3.47 3.50 -54.31 -0.19 -3.66 16 5 C 0.13 1.33 10.39 -16.56 -0.17 1.16 16 6 C -0.29 -3.59 6.13 -105.07 -0.64 -4.23 16 7 C 0.59 8.83 7.81 -12.52 -0.10 8.73 16 8 O -0.56 -10.12 16.90 5.27 0.09 -10.03 16 9 N -0.72 -10.01 5.44 -61.39 -0.33 -10.35 16 10 C 0.14 2.27 4.67 -4.04 -0.02 2.25 16 11 C -0.11 -1.86 2.99 -88.47 -0.26 -2.13 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.14 2.97 6.55 -2.53 -0.02 2.95 16 14 N -0.60 -15.24 3.39 -170.03 -0.58 -15.82 16 15 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 16 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 18 N -0.93 -26.87 10.31 55.49 0.57 -26.30 16 19 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.15 3.60 5.14 -3.03 -0.02 3.59 16 24 C 0.08 1.51 4.09 -24.87 -0.10 1.41 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.56 -9.92 12.17 -35.23 -0.43 -10.35 16 27 C 0.08 0.91 11.50 -16.98 -0.20 0.72 16 28 N -0.30 -3.49 12.50 30.86 0.39 -3.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.28 7.13 -51.93 -0.37 -0.09 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.18 1.58 7.23 -52.49 -0.38 1.20 16 37 H 0.40 4.66 7.39 -40.82 -0.30 4.36 16 38 H 0.08 1.44 7.49 -51.93 -0.39 1.05 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 44 H 0.05 1.30 7.43 -51.93 -0.39 0.91 16 45 H 0.37 5.21 9.12 45.56 0.42 5.63 16 46 H 0.19 1.61 7.50 -52.49 -0.39 1.22 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -35.54 378.56 -7.54 -43.07 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.37 Total: 6.35 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.36 Total: 7.44 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.14 Total: -59.23 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.34 Total: -20.38 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.54 -7.54 -43.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958585053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.996 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds