Wall clock time and date at job start Tue Mar 31 2020 13:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 N 1.46502 * 109.47193 * 119.99883 * 2 1 3 5 5 C 1.34256 * 125.75339 * 274.99840 * 4 2 1 6 6 C 1.38051 * 107.41370 * 180.02562 * 5 4 2 7 7 C 1.47426 * 126.41042 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00112 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99999 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00371 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47280 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.91790 * 51.10268 * 11 10 9 13 13 C 1.54904 * 111.00688 * 287.19860 * 11 10 9 14 14 N 1.47435 * 104.83391 * 204.91696 * 13 11 10 15 15 C 1.36934 * 125.64724 * 204.16628 * 14 13 11 16 16 H 1.08001 * 120.00082 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99885 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00122 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00256 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47140 * 89.99859 * 19 17 15 21 21 H 1.48496 * 109.47439 * 210.00085 * 19 17 15 22 22 H 1.48503 * 109.46841 * 329.99921 * 19 17 15 23 23 C 1.47022 * 108.70089 * 24.12919 * 14 13 11 24 24 C 1.54322 * 107.27269 * 358.93984 * 23 14 13 25 25 H 1.09002 * 110.71963 * 219.44477 * 24 23 14 26 26 O 1.42896 * 110.71801 * 96.34675 * 24 23 14 27 27 C 1.41284 * 107.17153 * 0.22277 * 6 5 4 28 28 N 1.30449 * 108.02615 * 359.62092 * 27 6 5 29 29 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46975 * 300.00087 * 1 2 3 31 31 H 1.08998 * 109.47178 * 60.00367 * 1 2 3 32 32 H 1.09002 * 109.46975 * 239.99913 * 2 1 3 33 33 H 1.09005 * 109.47037 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46778 * 299.99879 * 3 2 1 35 35 H 1.08992 * 109.47251 * 59.99946 * 3 2 1 36 36 H 1.07999 * 126.29435 * 0.02562 * 5 4 2 37 37 H 0.97005 * 119.99874 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.47035 * 60.00168 * 10 9 7 39 39 H 1.08997 * 109.47364 * 300.00303 * 10 9 7 40 40 H 1.08997 * 110.37110 * 86.08075 * 13 11 10 41 41 H 1.09005 * 110.37140 * 323.74975 * 13 11 10 42 42 H 0.96995 * 120.00311 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.87665 * 239.52284 * 23 14 13 44 44 H 1.08996 * 110.00949 * 118.43459 * 23 14 13 45 45 H 0.96702 * 113.99631 * 63.84596 * 26 24 23 46 46 H 1.08000 * 125.98717 * 179.73516 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1903 -0.1362 2.4068 6 6 2.6634 -1.1222 3.2493 7 6 2.9955 -0.9678 4.6773 8 8 2.8595 0.1119 5.2200 9 7 3.4499 -2.0234 5.3815 10 6 3.7804 -1.8700 6.8004 11 6 4.2685 -3.2085 7.3580 12 1 5.0560 -3.6272 6.7314 13 6 3.0940 -4.2063 7.5145 14 7 3.5316 -5.1425 8.5659 15 6 3.0786 -6.4240 8.7324 16 1 2.3362 -6.8261 8.0590 17 6 3.5738 -7.2063 9.7666 18 7 4.4790 -6.7165 10.5870 19 14 2.9554 -8.9542 9.9942 20 1 3.8076 -9.8864 9.2133 21 1 3.0146 -9.3169 11.4330 22 1 1.5522 -9.0489 9.5172 23 6 4.5356 -4.4727 9.4055 24 6 4.7471 -3.0580 8.8263 25 1 5.8005 -2.7802 8.8620 26 8 3.9496 -2.1008 9.5261 27 6 2.7751 -2.3054 2.4853 28 7 2.3847 -2.0392 1.2694 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.9946 0.8921 2.6727 37 1 3.5580 -2.8848 4.9487 38 1 2.8935 -1.5505 7.3476 39 1 4.5651 -1.1217 6.9118 40 1 2.9220 -4.7394 6.5795 41 1 2.1900 -3.6825 7.8254 42 1 4.8248 -7.2630 11.3099 43 1 5.4727 -5.0287 9.3775 44 1 4.1766 -4.4031 10.4323 45 1 4.1847 -1.9997 10.4586 46 1 3.1211 -3.2630 2.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958585054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:10 Heat of formation + Delta-G solvation = 14.007252 kcal Electronic energy + Delta-G solvation = -26957.891426 eV Core-core repulsion = 23077.989895 eV Total energy + Delta-G solvation = -3879.901531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.61858 -39.22855 -38.11310 -36.15341 -34.84850 -34.48045 -32.13725 -30.68954 -30.60719 -29.33902 -27.89127 -27.66757 -25.58907 -24.22415 -23.01730 -22.28185 -20.51867 -20.22044 -20.01690 -19.59455 -18.01178 -17.28116 -16.46405 -15.88669 -15.81235 -15.47875 -15.28477 -14.82774 -14.79765 -14.43801 -14.00889 -13.77007 -13.66323 -13.41072 -13.20282 -13.02681 -12.80665 -12.69154 -12.60799 -12.54201 -11.95187 -11.82325 -11.75256 -11.35803 -11.22973 -11.17202 -10.81171 -10.59369 -10.43570 -10.06113 -10.02267 -9.80396 -9.78977 -9.63830 -9.15319 -8.97788 -8.65155 -8.64087 -6.84875 -5.73393 -3.06183 1.40627 2.02917 2.06934 3.39487 3.44455 3.44818 3.46666 3.56809 3.98305 4.30356 4.47577 4.47966 4.49737 4.58194 4.75082 4.91612 4.97518 5.05244 5.12916 5.18622 5.21685 5.28762 5.37551 5.43803 5.52500 5.57360 5.59031 5.60983 5.65872 5.96398 6.13589 6.13829 6.23624 6.43677 6.45554 6.57346 6.61074 6.72659 6.94012 7.34949 7.40495 7.49886 7.74921 7.75695 8.22249 8.26838 8.45954 9.19717 9.80436 10.46216 11.38721 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.002451 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.727752 B =11419.100939 C =12532.335816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.358 5.358 5 C 0.126 3.874 6 C -0.290 4.290 7 C 0.592 3.408 8 O -0.556 6.556 9 N -0.722 5.722 10 C 0.144 3.856 11 C -0.109 4.109 12 H 0.089 0.911 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.925 5.925 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.153 3.847 24 C 0.082 3.918 25 H 0.056 0.944 26 O -0.564 6.564 27 C 0.082 3.918 28 N -0.298 5.298 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.184 0.816 37 H 0.398 0.602 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.252 0.748 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.375 0.625 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 15.321 -19.608 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.137 5.137 5 C -0.025 4.025 6 C -0.305 4.305 7 C 0.379 3.621 8 O -0.435 6.435 9 N -0.373 5.373 10 C 0.020 3.980 11 C -0.129 4.129 12 H 0.107 0.893 13 C 0.019 3.981 14 N -0.330 5.330 15 C -0.353 4.353 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.573 5.573 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.028 3.972 24 C 0.022 3.978 25 H 0.074 0.926 26 O -0.369 6.369 27 C -0.106 4.106 28 N -0.117 5.117 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.201 0.799 37 H 0.232 0.768 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.222 0.778 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.131 15.542 -20.951 26.273 hybrid contribution 0.209 -1.262 1.408 1.903 sum -2.922 14.279 -19.542 24.379 Atomic orbital electron populations 1.22261 0.93212 1.03617 1.03388 1.21392 0.95134 0.92886 0.85571 1.22246 1.02560 0.93772 1.04052 1.48771 1.48919 1.07553 1.08491 1.22844 0.95560 0.99572 0.84531 1.20327 1.19507 0.94688 0.95953 1.17202 0.76455 0.83890 0.84510 1.90759 1.54750 1.26531 1.71445 1.45877 1.67088 1.12506 1.11796 1.21143 1.01156 0.96753 0.78910 1.22676 0.99964 0.95066 0.95147 0.89308 1.21595 0.93943 0.90303 0.92309 1.44382 1.46714 1.10712 1.31168 1.19076 1.18512 0.86900 1.10831 0.90370 1.24795 0.99254 0.98665 0.97908 1.69930 1.32311 1.35865 1.19242 0.86096 0.78237 0.84278 0.77029 1.21615 1.21702 1.20698 1.21857 0.93834 0.87103 0.94424 1.23122 0.92376 0.90873 0.91394 0.92583 1.86402 1.62208 1.61846 1.26492 1.24116 0.97201 0.98959 0.90336 1.77174 1.20992 0.92802 1.20776 0.91384 0.91627 0.90210 0.87581 0.91247 0.89667 0.91182 0.79864 0.76767 0.90409 0.91793 0.94474 0.95639 0.93767 0.92991 0.93288 0.77795 0.79263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.52 37.16 0.35 -0.52 16 2 C 0.15 0.92 3.91 -67.93 -0.27 0.66 16 3 C -0.17 -0.70 8.82 37.16 0.33 -0.37 16 4 N -0.36 -3.45 3.50 -54.31 -0.19 -3.64 16 5 C 0.13 1.33 10.39 -16.56 -0.17 1.15 16 6 C -0.29 -3.58 6.13 -105.07 -0.64 -4.22 16 7 C 0.59 8.81 7.81 -12.52 -0.10 8.71 16 8 O -0.56 -10.11 16.90 5.27 0.09 -10.02 16 9 N -0.72 -9.98 5.49 -61.39 -0.34 -10.31 16 10 C 0.14 2.28 4.61 -4.05 -0.02 2.26 16 11 C -0.11 -1.85 2.98 -88.47 -0.26 -2.12 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 13 C 0.14 2.97 6.64 -2.53 -0.02 2.95 16 14 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 15 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.93 -26.85 10.31 55.49 0.57 -26.28 16 19 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.15 3.60 5.14 -3.06 -0.02 3.58 16 24 C 0.08 1.51 4.08 -24.89 -0.10 1.41 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 O -0.56 -9.95 12.26 -35.23 -0.43 -10.38 16 27 C 0.08 0.91 11.50 -16.98 -0.20 0.71 16 28 N -0.30 -3.48 12.50 30.86 0.39 -3.09 16 29 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.28 7.13 -51.93 -0.37 -0.09 16 36 H 0.18 1.58 7.23 -52.49 -0.38 1.20 16 37 H 0.40 4.61 7.43 -40.82 -0.30 4.31 16 38 H 0.08 1.42 7.56 -51.93 -0.39 1.03 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.56 7.91 -51.93 -0.41 0.15 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 44 H 0.05 1.28 7.43 -51.93 -0.39 0.89 16 45 H 0.38 5.27 9.12 45.56 0.42 5.68 16 46 H 0.19 1.59 7.50 -52.49 -0.39 1.20 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -35.49 378.76 -7.54 -43.03 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.38 Total: 6.35 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.36 Total: 7.43 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.15 Total: -59.14 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.34 Total: -20.40 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.49 -7.54 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958585054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.038 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds