Wall clock time and date at job start Tue Mar 31 2020 13:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 N 1.46502 * 109.47193 * 119.99883 * 2 1 3 5 5 C 1.34256 * 125.75339 * 274.99840 * 4 2 1 6 6 C 1.38051 * 107.41370 * 180.02562 * 5 4 2 7 7 C 1.47426 * 126.41042 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00112 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99999 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00371 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47280 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.91790 * 51.10268 * 11 10 9 13 13 C 1.54904 * 111.00688 * 287.19860 * 11 10 9 14 14 N 1.47435 * 104.83391 * 204.91696 * 13 11 10 15 15 C 1.36934 * 125.64724 * 204.16628 * 14 13 11 16 16 H 1.08001 * 120.00082 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99885 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00122 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00256 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47140 * 89.99859 * 19 17 15 21 21 H 1.48496 * 109.47439 * 210.00085 * 19 17 15 22 22 H 1.48503 * 109.46841 * 329.99921 * 19 17 15 23 23 C 1.47022 * 108.70089 * 24.12919 * 14 13 11 24 24 C 1.54322 * 107.27269 * 358.93984 * 23 14 13 25 25 H 1.09002 * 110.71963 * 219.44477 * 24 23 14 26 26 O 1.42896 * 110.71801 * 96.34675 * 24 23 14 27 27 C 1.41284 * 107.17153 * 0.22277 * 6 5 4 28 28 N 1.30449 * 108.02615 * 359.62092 * 27 6 5 29 29 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46975 * 300.00087 * 1 2 3 31 31 H 1.08998 * 109.47178 * 60.00367 * 1 2 3 32 32 H 1.09002 * 109.46975 * 239.99913 * 2 1 3 33 33 H 1.09005 * 109.47037 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46778 * 299.99879 * 3 2 1 35 35 H 1.08992 * 109.47251 * 59.99946 * 3 2 1 36 36 H 1.07999 * 126.29435 * 0.02562 * 5 4 2 37 37 H 0.97005 * 119.99874 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.47035 * 60.00168 * 10 9 7 39 39 H 1.08997 * 109.47364 * 300.00303 * 10 9 7 40 40 H 1.08997 * 110.37110 * 86.08075 * 13 11 10 41 41 H 1.09005 * 110.37140 * 323.74975 * 13 11 10 42 42 H 0.96995 * 120.00311 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.87665 * 239.52284 * 23 14 13 44 44 H 1.08996 * 110.00949 * 118.43459 * 23 14 13 45 45 H 0.96702 * 113.99631 * 63.84596 * 26 24 23 46 46 H 1.08000 * 125.98717 * 179.73516 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1903 -0.1362 2.4068 6 6 2.6634 -1.1222 3.2493 7 6 2.9955 -0.9678 4.6773 8 8 2.8595 0.1119 5.2200 9 7 3.4499 -2.0234 5.3815 10 6 3.7804 -1.8700 6.8004 11 6 4.2685 -3.2085 7.3580 12 1 5.0560 -3.6272 6.7314 13 6 3.0940 -4.2063 7.5145 14 7 3.5316 -5.1425 8.5659 15 6 3.0786 -6.4240 8.7324 16 1 2.3362 -6.8261 8.0590 17 6 3.5738 -7.2063 9.7666 18 7 4.4790 -6.7165 10.5870 19 14 2.9554 -8.9542 9.9942 20 1 3.8076 -9.8864 9.2133 21 1 3.0146 -9.3169 11.4330 22 1 1.5522 -9.0489 9.5172 23 6 4.5356 -4.4727 9.4055 24 6 4.7471 -3.0580 8.8263 25 1 5.8005 -2.7802 8.8620 26 8 3.9496 -2.1008 9.5261 27 6 2.7751 -2.3054 2.4853 28 7 2.3847 -2.0392 1.2694 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.9946 0.8921 2.6727 37 1 3.5580 -2.8848 4.9487 38 1 2.8935 -1.5505 7.3476 39 1 4.5651 -1.1217 6.9118 40 1 2.9220 -4.7394 6.5795 41 1 2.1900 -3.6825 7.8254 42 1 4.8248 -7.2630 11.3099 43 1 5.4727 -5.0287 9.3775 44 1 4.1766 -4.4031 10.4323 45 1 4.1847 -1.9997 10.4586 46 1 3.1211 -3.2630 2.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958585054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:09 Heat of formation + Delta-G solvation = -13.188374 kcal Electronic energy + Delta-G solvation = -26959.070717 eV Core-core repulsion = 23077.989895 eV Total energy + Delta-G solvation = -3881.080822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.43604 -40.50731 -39.58602 -36.71712 -36.37900 -35.97049 -33.91248 -31.84302 -31.45306 -30.70832 -29.35603 -28.24769 -27.25100 -25.63016 -24.06566 -23.23103 -22.16847 -21.38664 -20.95821 -20.81173 -19.14502 -18.90394 -18.00722 -16.94112 -16.77257 -16.62857 -16.54539 -16.10044 -15.85710 -15.65829 -15.36683 -15.05983 -14.98491 -14.53926 -14.35911 -14.20602 -13.90046 -13.79787 -13.48614 -13.20641 -13.11309 -13.08974 -13.02536 -12.66039 -12.40295 -12.36082 -12.29090 -12.06111 -11.95759 -11.86836 -11.75428 -11.50916 -10.87387 -10.76344 -10.69956 -10.58266 -10.10572 -9.61891 -8.89170 -7.84750 -5.19586 0.54702 1.17348 1.35490 1.46996 1.48498 1.57050 2.33256 2.49685 2.50899 3.29810 3.37613 3.43109 3.60633 3.76252 3.84815 3.90544 3.94899 3.99037 4.05670 4.07149 4.14256 4.36204 4.48018 4.59591 4.62256 4.66511 4.71194 4.75870 4.80446 4.88130 4.88840 4.98312 5.05389 5.15694 5.20074 5.37102 5.41486 5.43957 5.50257 5.57657 5.72266 5.90730 6.19216 6.51463 6.68557 6.95857 7.10824 7.33765 7.77517 8.42011 9.25544 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.002451 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.727752 B =11419.100939 C =12532.335816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C -0.163 4.163 4 N -0.351 5.351 5 C 0.133 3.867 6 C -0.314 4.314 7 C 0.594 3.406 8 O -0.594 6.594 9 N -0.714 5.714 10 C 0.160 3.840 11 C -0.091 4.091 12 H 0.110 0.890 13 C 0.142 3.858 14 N -0.625 5.625 15 C -0.240 4.240 16 H 0.082 0.918 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.978 3.022 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.272 1.272 23 C 0.160 3.840 24 C 0.095 3.905 25 H 0.087 0.913 26 O -0.571 6.571 27 C 0.084 3.916 28 N -0.322 5.322 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.201 0.799 37 H 0.411 0.589 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.011 0.989 42 H 0.247 0.753 43 H 0.024 0.976 44 H 0.013 0.987 45 H 0.390 0.610 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 16.042 -21.808 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.221 4.221 4 N -0.130 5.130 5 C -0.020 4.020 6 C -0.329 4.329 7 C 0.383 3.617 8 O -0.476 6.476 9 N -0.365 5.365 10 C 0.036 3.964 11 C -0.111 4.111 12 H 0.128 0.872 13 C 0.017 3.983 14 N -0.351 5.351 15 C -0.369 4.369 16 H 0.100 0.900 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.806 3.194 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.197 1.197 23 C 0.034 3.966 24 C 0.035 3.965 25 H 0.104 0.896 26 O -0.378 6.378 27 C -0.103 4.103 28 N -0.141 5.141 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.247 0.753 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.032 0.968 45 H 0.240 0.760 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.381 16.257 -23.202 28.532 hybrid contribution 0.212 -1.431 2.033 2.495 sum -3.168 14.826 -21.169 26.038 Atomic orbital electron populations 1.22242 0.92383 1.02820 1.04527 1.21780 0.95771 0.93819 0.84401 1.22253 1.02073 0.92422 1.05386 1.49124 1.47752 1.07002 1.09140 1.23125 0.94245 1.00025 0.84575 1.20209 1.21760 0.96032 0.94917 1.17502 0.75597 0.83271 0.85346 1.90734 1.56544 1.27953 1.72408 1.45733 1.66762 1.13090 1.10933 1.20815 1.00113 0.95783 0.79725 1.22567 0.98926 0.94710 0.94874 0.87244 1.21703 0.94663 0.90311 0.91590 1.44705 1.47005 1.10795 1.32597 1.19460 1.18394 0.88224 1.10773 0.89990 1.25623 0.99872 1.02519 0.97976 1.70143 1.33445 1.36916 1.19596 0.85082 0.78117 0.79740 0.76417 1.21024 1.22258 1.19655 1.21684 0.91929 0.89893 0.93056 1.22976 0.94163 0.87814 0.91594 0.89562 1.86382 1.62538 1.61025 1.27890 1.24438 0.96551 0.99440 0.89915 1.77138 1.21770 0.94077 1.21138 0.93093 0.91977 0.87585 0.87103 0.91962 0.87223 0.90979 0.78248 0.75307 0.92809 0.91313 0.92911 0.97118 0.94405 0.95834 0.96848 0.76039 0.77267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.52 71.98 0.69 -0.69 16 2 C 0.14 1.46 3.91 44.99 0.18 1.63 16 3 C -0.16 -0.95 8.82 71.98 0.64 -0.32 16 4 N -0.35 -6.26 3.50 -325.75 -1.14 -7.40 16 5 C 0.13 2.62 10.39 84.28 0.88 3.50 16 6 C -0.31 -7.39 6.13 -20.15 -0.12 -7.52 16 7 C 0.59 17.10 7.81 86.66 0.68 17.78 16 8 O -0.59 -21.36 16.90 -4.05 -0.07 -21.43 16 9 N -0.71 -18.69 5.49 -466.39 -2.56 -21.25 16 10 C 0.16 4.84 4.61 86.38 0.40 5.24 16 11 C -0.09 -2.96 2.98 -9.40 -0.03 -2.99 16 12 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 13 C 0.14 5.74 6.64 86.85 0.58 6.32 16 14 N -0.62 -31.78 3.39 -691.98 -2.35 -34.13 16 15 C -0.24 -13.37 10.28 84.03 0.86 -12.50 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 17 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 18 N -0.95 -56.58 10.31 21.65 0.22 -56.36 16 19 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.16 7.65 5.14 86.73 0.45 8.09 16 24 C 0.09 3.37 4.08 31.78 0.13 3.50 16 25 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 26 O -0.57 -19.66 12.26 -148.98 -1.83 -21.48 16 27 C 0.08 1.74 11.50 85.65 0.99 2.73 16 28 N -0.32 -7.08 12.50 -56.28 -0.70 -7.78 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.07 0.41 7.13 -2.39 -0.02 0.40 16 36 H 0.20 3.13 7.23 -2.91 -0.02 3.11 16 37 H 0.41 8.67 7.43 -92.70 -0.69 7.99 16 38 H 0.05 1.93 7.56 -2.39 -0.02 1.91 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.01 0.48 7.91 -2.38 -0.02 0.46 16 42 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.02 1.25 7.38 -2.39 -0.02 1.23 16 44 H 0.01 0.72 7.43 -2.39 -0.02 0.71 16 45 H 0.39 10.70 9.12 -74.06 -0.68 10.02 16 46 H 0.21 3.13 7.50 -2.91 -0.02 3.11 16 Total: -1.00 -77.94 378.76 0.00 -77.94 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.36 Total: 22.76 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 6.76 Total: 21.43 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -6.53 Total: -126.91 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.89 Total: -42.91 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -77.94 0.00 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958585054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.747 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds