Wall clock time and date at job start Tue Mar 31 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35765 * 117.00282 * 2 1 4 4 C 1.35592 * 126.08416 * 184.48143 * 3 2 1 5 5 C 1.41065 * 107.79826 * 179.97438 * 4 3 2 6 6 C 1.47718 * 125.98322 * 179.97438 * 5 4 3 7 7 O 1.21572 * 119.99812 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00068 * 179.72616 * 8 6 5 10 10 H 1.08996 * 109.49683 * 35.20961 * 9 8 6 11 11 C 1.53190 * 109.49607 * 275.11396 * 9 8 6 12 12 N 1.46925 * 108.77678 * 294.68098 * 11 9 8 13 13 C 1.36943 * 120.63177 * 126.41012 * 12 11 9 14 14 H 1.07997 * 119.99739 * 210.56918 * 13 12 11 15 15 C 1.38812 * 119.99162 * 30.57515 * 13 12 11 16 16 N 1.31609 * 120.00722 * 10.22918 * 15 13 12 17 17 Si 1.86809 * 119.99190 * 190.22952 * 15 13 12 18 18 H 1.48495 * 109.47070 * 60.00217 * 17 15 13 19 19 H 1.48502 * 109.46642 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47335 * 299.99705 * 17 15 13 21 21 C 1.46926 * 118.74029 * 306.39215 * 12 11 9 22 22 C 1.53191 * 108.77418 * 53.60713 * 21 12 11 23 23 C 1.53038 * 109.49831 * 155.27430 * 9 8 6 24 24 H 1.09006 * 109.46073 * 178.58883 * 23 9 8 25 25 C 1.53000 * 109.46108 * 298.56497 * 23 9 8 26 26 N 1.31862 * 108.03366 * 0.22822 * 5 4 3 27 27 N 1.35845 * 126.08395 * 4.46236 * 3 2 1 28 28 C 1.46501 * 125.94778 * 0.04783 * 27 3 2 29 29 H 1.08999 * 109.47015 * 306.57886 * 1 2 3 30 30 H 1.09001 * 109.46885 * 66.58055 * 1 2 3 31 31 H 1.09002 * 109.47269 * 186.58053 * 1 2 3 32 32 H 1.07997 * 126.10247 * 0.02562 * 4 3 2 33 33 H 0.96997 * 120.00095 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.59257 * 54.47292 * 11 9 8 35 35 H 1.09005 * 109.58870 * 174.89563 * 11 9 8 36 36 H 0.97003 * 120.00710 * 180.02562 * 16 15 13 37 37 H 1.08991 * 109.58838 * 293.82109 * 21 12 11 38 38 H 1.08997 * 109.70227 * 173.46023 * 21 12 11 39 39 H 1.08998 * 109.50099 * 185.41284 * 22 21 12 40 40 H 1.09009 * 109.50282 * 65.31591 * 22 21 12 41 41 H 1.09003 * 109.47126 * 60.00394 * 25 23 9 42 42 H 1.08999 * 109.46918 * 179.97438 * 25 23 9 43 43 H 1.08994 * 109.47223 * 299.99801 * 25 23 9 44 44 H 1.09000 * 109.46681 * 83.11982 * 28 27 3 45 45 H 1.08993 * 109.47107 * 203.11700 * 28 27 3 46 46 H 1.08999 * 109.47283 * 323.12453 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3814 1.4252 -0.0856 5 6 3.5963 2.8189 -0.0516 6 6 4.9070 3.4969 -0.1187 7 8 5.9264 2.8411 -0.2128 8 7 4.9728 4.8423 -0.0766 9 6 6.2731 5.5144 -0.1371 10 1 6.9409 4.9563 -0.7932 11 6 6.8779 5.5853 1.2686 12 7 6.0318 6.4479 2.1045 13 6 5.5453 5.9979 3.3029 14 1 4.5965 6.3598 3.6707 15 6 6.2718 5.0767 4.0448 16 7 7.5098 4.7872 3.7047 17 14 5.4921 4.2478 5.5263 18 1 4.2891 3.4919 5.0944 19 1 6.4687 3.3135 6.1416 20 1 5.0986 5.2785 6.5202 21 6 5.7179 7.8027 1.6305 22 6 5.1261 7.7070 0.2207 23 6 6.0901 6.9329 -0.6815 24 1 7.0543 7.4410 -0.7027 25 6 5.5183 6.8651 -2.0990 26 7 2.4227 3.4105 0.0560 27 7 1.4335 2.4195 0.0854 28 6 -0.0095 2.6476 0.1948 29 1 -0.3633 0.6124 0.8253 30 1 -0.3633 0.4085 -0.9430 31 1 -0.3634 -1.0209 0.1178 32 1 4.1446 0.6654 -0.1663 33 1 4.1594 5.3655 -0.0026 34 1 6.9186 4.5850 1.6998 35 1 7.8833 6.0027 1.2133 36 1 8.0173 4.1432 4.2229 37 1 6.6286 8.4009 1.6046 38 1 4.9941 8.2677 2.2997 39 1 4.9780 8.7095 -0.1806 40 1 4.1694 7.1862 0.2622 41 1 4.5543 6.3567 -2.0780 42 1 5.3875 7.8754 -2.4867 43 1 6.2053 6.3150 -2.7419 44 1 -0.3152 2.5469 1.2362 45 1 -0.2465 3.6512 -0.1580 46 1 -0.5404 1.9142 -0.4121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967294173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:13 Heat of formation + Delta-G solvation = 48.035212 kcal Electronic energy + Delta-G solvation = -28790.378012 eV Core-core repulsion = 24911.952043 eV Total energy + Delta-G solvation = -3878.425968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.54951 -39.43978 -38.34274 -37.24466 -34.04821 -33.49417 -32.69947 -30.94827 -30.23057 -29.01018 -27.98164 -27.25978 -26.36525 -24.08762 -23.23146 -21.87616 -21.43011 -20.99431 -19.80758 -18.55785 -18.18765 -16.81363 -16.66375 -16.20668 -15.72522 -15.29736 -14.93523 -14.79578 -14.64807 -14.15460 -14.04471 -13.82253 -13.68469 -13.44282 -13.26781 -13.11394 -12.98945 -12.76344 -12.48289 -11.84815 -11.60789 -11.52654 -11.44846 -11.28249 -10.99457 -10.80446 -10.71552 -10.66826 -10.43770 -10.15178 -9.86146 -9.66968 -9.48072 -9.37242 -9.11375 -8.38323 -8.36324 -8.25088 -6.51262 -5.66640 -3.14666 1.56344 2.13366 2.35749 2.77404 3.43868 3.50222 3.50357 3.73226 3.97939 4.18874 4.49174 4.57346 4.61049 4.79001 4.91433 4.96057 5.17804 5.28143 5.33582 5.34386 5.43251 5.53346 5.61025 5.64634 5.94256 5.97527 5.98813 6.02698 6.10063 6.23830 6.38060 6.45317 6.49510 6.53732 6.64000 6.75950 6.83655 6.97912 7.09000 7.24007 7.41016 7.50318 7.81239 7.89767 8.23000 8.58886 8.83950 9.32151 9.94418 10.50918 11.40430 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.005004 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.958735 B = 5593.831116 C = 7005.278301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C 0.262 3.738 4 C -0.233 4.233 5 C 0.072 3.928 6 C 0.596 3.404 7 O -0.531 6.531 8 N -0.680 5.680 9 C 0.123 3.877 10 H 0.078 0.922 11 C 0.160 3.840 12 N -0.587 5.587 13 C -0.250 4.250 14 H 0.061 0.939 15 C 0.008 3.992 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.143 3.857 22 C -0.130 4.130 23 C -0.093 4.093 24 H 0.078 0.922 25 C -0.145 4.145 26 N -0.248 5.248 27 N -0.398 5.398 28 C 0.079 3.921 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.164 0.836 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.026 0.974 36 H 0.254 0.746 37 H 0.018 0.982 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.339 -3.233 -11.394 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.195 6.195 3 C 0.096 3.904 4 C -0.263 4.263 5 C -0.097 4.097 6 C 0.378 3.622 7 O -0.405 6.405 8 N -0.330 5.330 9 C 0.018 3.982 10 H 0.096 0.904 11 C 0.033 3.967 12 N -0.310 5.310 13 C -0.380 4.380 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.545 5.545 17 Si 0.730 3.270 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.017 3.983 22 C -0.170 4.170 23 C -0.112 4.112 24 H 0.096 0.904 25 C -0.202 4.202 26 N -0.078 5.078 27 N -0.195 5.195 28 C -0.062 4.062 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.182 0.818 33 H 0.237 0.763 34 H 0.120 0.880 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.108 -3.000 -11.262 19.081 hybrid contribution -0.861 -0.939 0.956 1.592 sum -15.969 -3.939 -10.307 19.410 Atomic orbital electron populations 1.23623 0.78359 1.05119 1.01372 1.86295 1.21327 1.21820 1.90096 1.19521 0.91124 0.78854 1.00889 1.20371 0.91937 0.95855 1.18146 1.22079 0.93126 0.93002 1.01444 1.16756 0.85466 0.82470 0.77481 1.90784 1.34101 1.65231 1.50412 1.45696 1.10498 1.05139 1.71702 1.21902 0.84205 0.91058 1.01067 0.90384 1.21265 0.90945 0.98694 0.85810 1.43932 1.59120 1.08404 1.19528 1.19022 1.00313 1.23006 0.95681 0.92166 1.25081 0.94959 1.01328 0.97698 1.69911 1.08090 1.35822 1.40655 0.86423 0.78407 0.79271 0.82934 1.21241 1.21556 1.21016 1.20923 0.96942 0.88337 0.92131 1.22095 0.98518 0.98476 0.97867 1.21308 0.99973 0.95886 0.94053 0.90350 1.21856 1.00966 1.00812 0.96592 1.77744 0.95278 1.10762 1.24064 1.49034 1.07011 1.03081 1.60345 1.22469 0.75140 1.05321 1.03244 0.91712 0.92067 0.87489 0.81800 0.76284 0.88031 0.95588 0.93533 0.96453 0.92920 0.92840 0.92638 0.92997 0.93212 0.93057 0.90493 0.88466 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.39 101.05 0.95 1.01 16 2 O -0.29 -3.47 10.57 -19.00 -0.20 -3.68 16 3 C 0.26 3.84 7.78 -16.72 -0.13 3.71 16 4 C -0.23 -4.05 10.59 -39.46 -0.42 -4.46 16 5 C 0.07 1.36 7.09 -82.91 -0.59 0.77 16 6 C 0.60 12.55 7.79 -12.39 -0.10 12.45 16 7 O -0.53 -12.61 16.56 5.30 0.09 -12.52 16 8 N -0.68 -13.30 4.25 -54.68 -0.23 -13.54 16 9 C 0.12 2.44 2.24 -67.81 -0.15 2.29 16 10 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 11 C 0.16 3.92 4.86 -3.71 -0.02 3.90 16 12 N -0.59 -14.63 2.91 -172.32 -0.50 -15.13 16 13 C -0.25 -6.97 9.60 -15.06 -0.14 -7.11 16 14 H 0.06 1.66 7.85 -52.49 -0.41 1.24 16 15 C 0.01 0.24 5.07 -17.43 -0.09 0.15 16 16 N -0.90 -27.08 10.96 55.49 0.61 -26.47 16 17 Si 0.90 22.84 29.57 -169.99 -5.03 17.81 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 C 0.14 2.94 6.51 -3.71 -0.02 2.91 16 22 C -0.13 -2.16 5.20 -26.61 -0.14 -2.29 16 23 C -0.09 -1.52 2.48 -90.58 -0.22 -1.74 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 C -0.14 -1.97 9.05 37.16 0.34 -1.63 16 26 N -0.25 -4.25 12.26 33.34 0.41 -3.84 16 27 N -0.40 -5.48 4.04 -68.19 -0.28 -5.75 16 28 C 0.08 0.63 9.60 59.85 0.57 1.21 16 29 H 0.06 0.36 5.78 -51.93 -0.30 0.06 16 30 H 0.06 0.30 6.67 -51.93 -0.35 -0.04 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 33 H 0.40 7.45 6.33 -40.82 -0.26 7.19 16 34 H 0.10 2.95 6.02 -51.93 -0.31 2.63 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 1.07 7.94 -51.93 -0.41 0.65 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.94 6.40 -51.92 -0.33 0.60 16 41 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.54 7.68 -51.93 -0.40 0.14 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.46 4.59 -51.93 -0.24 0.22 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -34.68 365.57 -6.52 -41.20 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.74 Total: 5.25 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -0.16 Total: 11.17 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: 0.01 Total: -64.74 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.11 Total: -16.20 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.68 -6.52 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967294173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.232 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds