Wall clock time and date at job start Tue Mar 31 2020 14:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35765 * 117.00282 * 2 1 4 4 C 1.35592 * 126.08416 * 184.48143 * 3 2 1 5 5 C 1.41065 * 107.79826 * 179.97438 * 4 3 2 6 6 C 1.47718 * 125.98322 * 179.97438 * 5 4 3 7 7 O 1.21572 * 119.99812 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00068 * 179.72616 * 8 6 5 10 10 H 1.08996 * 109.49683 * 35.20961 * 9 8 6 11 11 C 1.53190 * 109.49607 * 275.11396 * 9 8 6 12 12 N 1.46925 * 108.77678 * 294.68098 * 11 9 8 13 13 C 1.36943 * 120.63177 * 126.41012 * 12 11 9 14 14 H 1.07997 * 119.99739 * 210.56918 * 13 12 11 15 15 C 1.38812 * 119.99162 * 30.57515 * 13 12 11 16 16 N 1.31609 * 120.00722 * 10.22918 * 15 13 12 17 17 Si 1.86809 * 119.99190 * 190.22952 * 15 13 12 18 18 H 1.48495 * 109.47070 * 60.00217 * 17 15 13 19 19 H 1.48502 * 109.46642 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47335 * 299.99705 * 17 15 13 21 21 C 1.46926 * 118.74029 * 306.39215 * 12 11 9 22 22 C 1.53191 * 108.77418 * 53.60713 * 21 12 11 23 23 C 1.53038 * 109.49831 * 155.27430 * 9 8 6 24 24 H 1.09006 * 109.46073 * 178.58883 * 23 9 8 25 25 C 1.53000 * 109.46108 * 298.56497 * 23 9 8 26 26 N 1.31862 * 108.03366 * 0.22822 * 5 4 3 27 27 N 1.35845 * 126.08395 * 4.46236 * 3 2 1 28 28 C 1.46501 * 125.94778 * 0.04783 * 27 3 2 29 29 H 1.08999 * 109.47015 * 306.57886 * 1 2 3 30 30 H 1.09001 * 109.46885 * 66.58055 * 1 2 3 31 31 H 1.09002 * 109.47269 * 186.58053 * 1 2 3 32 32 H 1.07997 * 126.10247 * 0.02562 * 4 3 2 33 33 H 0.96997 * 120.00095 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.59257 * 54.47292 * 11 9 8 35 35 H 1.09005 * 109.58870 * 174.89563 * 11 9 8 36 36 H 0.97003 * 120.00710 * 180.02562 * 16 15 13 37 37 H 1.08991 * 109.58838 * 293.82109 * 21 12 11 38 38 H 1.08997 * 109.70227 * 173.46023 * 21 12 11 39 39 H 1.08998 * 109.50099 * 185.41284 * 22 21 12 40 40 H 1.09009 * 109.50282 * 65.31591 * 22 21 12 41 41 H 1.09003 * 109.47126 * 60.00394 * 25 23 9 42 42 H 1.08999 * 109.46918 * 179.97438 * 25 23 9 43 43 H 1.08994 * 109.47223 * 299.99801 * 25 23 9 44 44 H 1.09000 * 109.46681 * 83.11982 * 28 27 3 45 45 H 1.08993 * 109.47107 * 203.11700 * 28 27 3 46 46 H 1.08999 * 109.47283 * 323.12453 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3814 1.4252 -0.0856 5 6 3.5963 2.8189 -0.0516 6 6 4.9070 3.4969 -0.1187 7 8 5.9264 2.8411 -0.2128 8 7 4.9728 4.8423 -0.0766 9 6 6.2731 5.5144 -0.1371 10 1 6.9409 4.9563 -0.7932 11 6 6.8779 5.5853 1.2686 12 7 6.0318 6.4479 2.1045 13 6 5.5453 5.9979 3.3029 14 1 4.5965 6.3598 3.6707 15 6 6.2718 5.0767 4.0448 16 7 7.5098 4.7872 3.7047 17 14 5.4921 4.2478 5.5263 18 1 4.2891 3.4919 5.0944 19 1 6.4687 3.3135 6.1416 20 1 5.0986 5.2785 6.5202 21 6 5.7179 7.8027 1.6305 22 6 5.1261 7.7070 0.2207 23 6 6.0901 6.9329 -0.6815 24 1 7.0543 7.4410 -0.7027 25 6 5.5183 6.8651 -2.0990 26 7 2.4227 3.4105 0.0560 27 7 1.4335 2.4195 0.0854 28 6 -0.0095 2.6476 0.1948 29 1 -0.3633 0.6124 0.8253 30 1 -0.3633 0.4085 -0.9430 31 1 -0.3634 -1.0209 0.1178 32 1 4.1446 0.6654 -0.1663 33 1 4.1594 5.3655 -0.0026 34 1 6.9186 4.5850 1.6998 35 1 7.8833 6.0027 1.2133 36 1 8.0173 4.1432 4.2229 37 1 6.6286 8.4009 1.6046 38 1 4.9941 8.2677 2.2997 39 1 4.9780 8.7095 -0.1806 40 1 4.1694 7.1862 0.2622 41 1 4.5543 6.3567 -2.0780 42 1 5.3875 7.8754 -2.4867 43 1 6.2053 6.3150 -2.7419 44 1 -0.3152 2.5469 1.2362 45 1 -0.2465 3.6512 -0.1580 46 1 -0.5404 1.9142 -0.4121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967294173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:12 Heat of formation + Delta-G solvation = 22.110810 kcal Electronic energy + Delta-G solvation = -28791.502178 eV Core-core repulsion = 24911.952043 eV Total energy + Delta-G solvation = -3879.550135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70770 -41.00052 -39.44776 -38.81106 -35.91943 -34.58997 -34.23972 -32.81331 -31.46272 -30.55082 -29.04976 -28.79968 -27.21978 -25.88002 -24.69542 -23.42914 -22.70271 -22.51215 -21.20208 -20.25950 -19.32758 -18.61779 -17.71330 -17.52574 -17.03392 -16.74697 -16.34301 -16.20299 -15.98956 -15.66316 -15.40334 -15.29437 -14.90275 -14.74608 -14.66501 -14.59017 -14.10696 -13.96452 -13.89220 -13.53759 -13.10225 -13.01026 -12.68135 -12.62602 -12.49663 -12.40066 -12.29170 -12.26375 -11.93594 -11.80155 -11.54388 -11.35610 -11.13021 -11.03788 -10.54156 -10.26502 -9.91810 -9.54505 -8.57418 -7.82823 -5.32880 0.24587 1.04963 1.11660 1.38136 1.42313 1.47395 1.83237 2.29218 2.46550 2.49580 3.13654 3.32722 3.72086 3.83270 3.91761 4.00890 4.02045 4.15322 4.17709 4.25437 4.29966 4.37089 4.51847 4.54842 4.65875 4.70116 4.70541 4.74119 4.84226 4.93789 4.98080 5.00067 5.11673 5.18920 5.22761 5.25945 5.29566 5.48928 5.53928 5.60987 5.71607 5.77620 6.14701 6.28848 6.43795 6.66273 7.17821 7.23971 7.89980 8.40886 9.20802 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.005004 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.958735 B = 5593.831116 C = 7005.278301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.299 6.299 3 C 0.283 3.717 4 C -0.269 4.269 5 C 0.045 3.955 6 C 0.590 3.410 7 O -0.571 6.571 8 N -0.670 5.670 9 C 0.132 3.868 10 H 0.070 0.930 11 C 0.170 3.830 12 N -0.602 5.602 13 C -0.249 4.249 14 H 0.065 0.935 15 C -0.049 4.049 16 N -0.933 5.933 17 Si 0.956 3.044 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.268 1.268 21 C 0.137 3.863 22 C -0.117 4.117 23 C -0.086 4.086 24 H 0.083 0.917 25 C -0.135 4.135 26 N -0.257 5.257 27 N -0.383 5.383 28 C 0.061 3.939 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.408 0.592 34 H 0.052 0.948 35 H 0.003 0.997 36 H 0.246 0.754 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 -2.305 -12.529 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.205 6.205 3 C 0.114 3.886 4 C -0.299 4.299 5 C -0.121 4.121 6 C 0.374 3.626 7 O -0.449 6.449 8 N -0.320 5.320 9 C 0.026 3.974 10 H 0.088 0.912 11 C 0.043 3.957 12 N -0.325 5.325 13 C -0.380 4.380 14 H 0.082 0.918 15 C -0.244 4.244 16 N -0.579 5.579 17 Si 0.785 3.215 18 H -0.215 1.215 19 H -0.223 1.223 20 H -0.193 1.193 21 C 0.012 3.988 22 C -0.156 4.156 23 C -0.105 4.105 24 H 0.101 0.899 25 C -0.193 4.193 26 N -0.090 5.090 27 N -0.181 5.181 28 C -0.077 4.077 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.245 0.755 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.127 0.873 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.020 -2.025 -12.410 22.800 hybrid contribution 0.155 -1.265 1.310 1.828 sum -18.865 -3.289 -11.100 22.134 Atomic orbital electron populations 1.24126 0.75195 1.07543 1.03201 1.86330 1.24567 1.20080 1.89548 1.19326 0.90533 0.80061 0.98660 1.20407 0.93622 0.95314 1.20600 1.21713 0.92726 0.93639 1.04026 1.17181 0.86122 0.82759 0.76573 1.90742 1.35833 1.66069 1.52263 1.45602 1.10486 1.04845 1.71080 1.21670 0.84157 0.93742 0.97843 0.91180 1.20923 0.90597 0.95867 0.88315 1.44125 1.58926 1.10405 1.19038 1.19345 1.00147 1.22280 0.96230 0.91785 1.25784 0.95472 1.02672 1.00499 1.70101 1.09464 1.36619 1.41765 0.85516 0.77125 0.78411 0.80477 1.21497 1.22299 1.19322 1.21136 0.97212 0.85807 0.94642 1.21973 0.97848 1.00713 0.95079 1.21281 1.00657 0.92820 0.95772 0.89860 1.21765 1.00585 1.02655 0.94257 1.77616 0.95258 1.11919 1.24160 1.49413 1.08418 1.02115 1.58203 1.23075 0.71849 1.07408 1.05322 0.90230 0.89834 0.84910 0.82768 0.75491 0.92960 0.97876 0.94517 0.96449 0.92638 0.88878 0.92643 0.93121 0.90328 0.92862 0.88802 0.87334 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.39 113.37 1.06 1.00 16 2 O -0.30 -6.53 10.57 -90.92 -0.96 -7.49 16 3 C 0.28 7.96 7.78 83.46 0.65 8.61 16 4 C -0.27 -9.65 10.59 22.35 0.24 -9.41 16 5 C 0.05 1.76 7.09 42.34 0.30 2.06 16 6 C 0.59 26.05 7.79 86.75 0.68 26.73 16 7 O -0.57 -29.10 16.56 -3.94 -0.07 -29.17 16 8 N -0.67 -26.78 4.25 -445.17 -1.89 -28.67 16 9 C 0.13 5.35 2.24 45.07 0.10 5.45 16 10 H 0.07 2.95 7.58 -2.39 -0.02 2.94 16 11 C 0.17 8.77 4.86 86.36 0.42 9.19 16 12 N -0.60 -30.53 2.91 -699.11 -2.03 -32.56 16 13 C -0.25 -14.11 9.60 84.03 0.81 -13.31 16 14 H 0.06 3.52 7.85 -2.91 -0.02 3.49 16 15 C -0.05 -2.90 5.07 84.86 0.43 -2.47 16 16 N -0.93 -58.93 10.96 21.65 0.24 -58.70 16 17 Si 0.96 48.12 29.57 68.60 2.03 50.15 16 18 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 19 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 C 0.14 5.48 6.51 86.36 0.56 6.04 16 22 C -0.12 -3.57 5.20 30.67 0.16 -3.41 16 23 C -0.09 -2.67 2.48 -10.77 -0.03 -2.69 16 24 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 25 C -0.14 -3.28 9.05 71.98 0.65 -2.63 16 26 N -0.26 -8.66 12.26 -48.42 -0.59 -9.25 16 27 N -0.38 -9.75 4.04 -480.58 -1.94 -11.69 16 28 C 0.06 0.75 9.60 127.77 1.23 1.97 16 29 H 0.08 0.52 5.78 -2.39 -0.01 0.51 16 30 H 0.08 0.42 6.67 -2.39 -0.02 0.40 16 31 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.15 5.58 8.06 -2.91 -0.02 5.56 16 33 H 0.41 15.01 6.33 -92.71 -0.59 14.43 16 34 H 0.05 3.23 6.02 -2.39 -0.01 3.22 16 35 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 36 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.72 6.40 -2.38 -0.02 1.70 16 41 H 0.05 1.25 7.54 -2.39 -0.02 1.23 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 0.91 7.68 -2.39 -0.02 0.89 16 45 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.13 0.63 4.59 -2.39 -0.01 0.62 16 Total: -1.00 -81.20 365.57 2.45 -78.75 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.42 Total: 21.49 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 7.26 Total: 27.13 kcal Atomic # 7 Polarization: -134.65 SS G_CDS: -6.22 Total: -140.87 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.03 Total: -36.66 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -81.20 2.45 -78.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967294173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.859 kcal (2) G-P(sol) polarization free energy of solvation -81.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds