Wall clock time and date at job start Tue Mar 31 2020 14:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35766 * 116.99994 * 2 1 4 4 C 1.35590 * 126.08449 * 180.43729 * 3 2 1 5 5 C 1.41066 * 107.80081 * 180.02562 * 4 3 2 6 6 C 1.47721 * 125.98451 * 179.97438 * 5 4 3 7 7 O 1.21575 * 119.99990 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00030 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99618 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.49720 * 324.93453 * 9 8 6 11 11 C 1.53191 * 109.49795 * 85.00336 * 9 8 6 12 12 N 1.46924 * 108.77676 * 174.58617 * 11 9 8 13 13 C 1.36931 * 120.63607 * 126.38873 * 12 11 9 14 14 H 1.08003 * 120.00451 * 209.55329 * 13 12 11 15 15 C 1.38812 * 119.99944 * 29.55180 * 13 12 11 16 16 N 1.31623 * 120.00124 * 15.74282 * 15 13 12 17 17 Si 1.86801 * 120.00250 * 195.75348 * 15 13 12 18 18 H 1.48501 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47507 * 119.99668 * 17 15 13 20 20 H 1.48498 * 109.46823 * 239.99881 * 17 15 13 21 21 C 1.46934 * 118.73262 * 306.38701 * 12 11 9 22 22 C 1.53190 * 108.77435 * 53.61374 * 21 12 11 23 23 C 1.53036 * 109.31199 * 305.35968 * 22 21 12 24 24 H 1.09002 * 109.46198 * 301.34745 * 23 22 21 25 25 C 1.53005 * 109.46084 * 181.38968 * 23 22 21 26 26 N 1.31860 * 108.03415 * 0.23721 * 5 4 3 27 27 N 1.35848 * 126.08691 * 0.46283 * 3 2 1 28 28 C 1.46496 * 125.94542 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.46994 * 309.55796 * 1 2 3 30 30 H 1.09000 * 109.47350 * 69.55499 * 1 2 3 31 31 H 1.09002 * 109.47135 * 189.55770 * 1 2 3 32 32 H 1.08004 * 126.10469 * 0.04317 * 4 3 2 33 33 H 0.96998 * 120.00108 * 359.97438 * 8 6 5 34 34 H 1.09007 * 109.58294 * 294.37033 * 11 9 8 35 35 H 1.09001 * 109.58898 * 54.79420 * 11 9 8 36 36 H 0.96996 * 119.99855 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.58630 * 293.82114 * 21 12 11 38 38 H 1.09003 * 109.69986 * 173.46779 * 21 12 11 39 39 H 1.09000 * 109.49662 * 185.41196 * 22 21 12 40 40 H 1.08999 * 109.50063 * 65.31397 * 22 21 12 41 41 H 1.08997 * 109.46784 * 299.93317 * 25 23 22 42 42 H 1.09001 * 109.46539 * 59.93474 * 25 23 22 43 43 H 1.08997 * 109.46891 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.46956 * 83.48104 * 28 27 3 45 45 H 1.08998 * 109.47276 * 203.48418 * 28 27 3 46 46 H 1.09000 * 109.47652 * 323.48407 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3842 1.4238 -0.0084 5 6 3.5980 2.8181 -0.0044 6 6 4.9110 3.4950 -0.0102 7 8 5.9337 2.8376 -0.0189 8 7 4.9753 4.8412 -0.0060 9 6 6.2775 5.5123 -0.0112 10 1 6.9895 4.9294 0.5730 11 6 6.7813 5.6396 -1.4523 12 7 8.0215 6.4274 -1.4518 13 6 9.1580 5.9400 -2.0398 14 1 10.1279 6.2318 -1.6648 15 6 9.0636 5.0707 -3.1179 16 7 7.9270 4.9535 -3.7713 17 14 10.5495 4.0669 -3.6414 18 1 11.6964 4.3795 -2.7513 19 1 10.2283 2.6203 -3.5460 20 1 10.9053 4.4036 -5.0432 21 6 8.0190 7.7484 -0.8084 22 6 7.5013 7.5974 0.6254 23 6 6.1353 6.9079 0.6004 24 1 5.4416 7.4980 0.0014 25 6 5.5993 6.7865 2.0283 26 7 2.4206 3.4116 0.0112 27 7 1.4305 2.4210 0.0089 28 6 -0.0163 2.6510 0.0196 29 1 -0.3633 0.6545 0.7923 30 1 -0.3634 0.3590 -0.9629 31 1 -0.3633 -1.0134 0.1706 32 1 4.1504 0.6626 -0.0169 33 1 4.1594 5.3657 0.0005 34 1 6.9786 4.6479 -1.8594 35 1 6.0289 6.1430 -2.0594 36 1 7.8610 4.3458 -4.5244 37 1 7.3675 8.4237 -1.3630 38 1 9.0320 8.1505 -0.7908 39 1 7.4035 8.5821 1.0825 40 1 8.2022 6.9954 1.2038 41 1 6.2924 6.1961 2.6275 42 1 5.4979 7.7805 2.4640 43 1 4.6262 6.2959 2.0106 44 1 -0.3865 2.5888 1.0430 45 1 -0.2299 3.6404 -0.3846 46 1 -0.5090 1.8948 -0.5915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967294175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:16 Heat of formation + Delta-G solvation = 45.617540 kcal Electronic energy + Delta-G solvation = -28028.597479 eV Core-core repulsion = 24150.066673 eV Total energy + Delta-G solvation = -3878.530807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69816 -39.45738 -38.41597 -37.35458 -34.26856 -33.63514 -33.02055 -30.91907 -30.35875 -28.83393 -28.07676 -27.29889 -26.46582 -24.08528 -23.44902 -21.74736 -21.48943 -20.89516 -19.76633 -19.20998 -18.13084 -16.96493 -16.72432 -16.28800 -15.92585 -15.47023 -15.00250 -14.97373 -14.71915 -14.23236 -14.10767 -13.78719 -13.66146 -13.51132 -13.35875 -13.19998 -13.06553 -12.87125 -12.34205 -11.93483 -11.75257 -11.59933 -11.55828 -11.49617 -10.88231 -10.82640 -10.65626 -10.56197 -10.37033 -10.07722 -9.96164 -9.85147 -9.52691 -9.39805 -9.26152 -8.50392 -8.44093 -8.35521 -6.55666 -5.67892 -3.13244 1.39054 1.98280 2.21155 2.64911 3.47535 3.55679 3.56453 3.57864 3.75504 4.04529 4.37442 4.50926 4.60937 4.67591 4.76340 4.84450 5.06966 5.20187 5.24749 5.33925 5.40892 5.48191 5.61725 5.68039 5.81617 5.84603 5.99224 6.10075 6.10916 6.19027 6.31154 6.37016 6.47383 6.53465 6.60812 6.81267 6.82850 7.00254 7.04533 7.10603 7.25722 7.40141 7.81028 7.90893 8.02881 8.56291 8.65913 9.30850 9.94340 10.50234 11.40046 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.003585 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.243335 B = 7808.544569 C = 9275.001827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.265 3.735 4 C -0.232 4.232 5 C 0.070 3.930 6 C 0.593 3.407 7 O -0.515 6.515 8 N -0.701 5.701 9 C 0.123 3.877 10 H 0.085 0.915 11 C 0.167 3.833 12 N -0.588 5.588 13 C -0.256 4.256 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.899 5.899 17 Si 0.901 3.099 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.291 1.291 21 C 0.142 3.858 22 C -0.125 4.125 23 C -0.092 4.092 24 H 0.067 0.933 25 C -0.145 4.145 26 N -0.253 5.253 27 N -0.397 5.397 28 C 0.079 3.921 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.399 0.601 34 H 0.094 0.906 35 H 0.018 0.982 36 H 0.253 0.747 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 -3.755 10.481 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.098 3.902 4 C -0.262 4.262 5 C -0.098 4.098 6 C 0.375 3.625 7 O -0.387 6.387 8 N -0.352 5.352 9 C 0.018 3.982 10 H 0.103 0.897 11 C 0.040 3.960 12 N -0.310 5.310 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.542 5.542 17 Si 0.731 3.269 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.218 1.218 21 C 0.016 3.984 22 C -0.165 4.165 23 C -0.111 4.111 24 H 0.086 0.914 25 C -0.202 4.202 26 N -0.084 5.084 27 N -0.194 5.194 28 C -0.062 4.062 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.183 0.817 33 H 0.233 0.767 34 H 0.112 0.888 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.468 -3.527 10.331 22.320 hybrid contribution 0.092 -1.037 -0.398 1.115 sum -19.376 -4.564 9.933 22.247 Atomic orbital electron populations 1.23637 0.78222 1.05158 1.01466 1.86309 1.21425 1.21695 1.89991 1.19542 0.91046 0.78841 1.00731 1.20402 0.91892 0.95858 1.18074 1.22087 0.92958 0.93064 1.01719 1.16829 0.85619 0.82435 0.77598 1.90858 1.33871 1.64985 1.49030 1.45922 1.10362 1.05420 1.73472 1.22075 0.82828 0.91470 1.01787 0.89724 1.21092 0.87055 0.98836 0.89012 1.43943 1.09147 1.13117 1.64831 1.19167 0.85615 1.25179 1.08594 0.91657 1.25083 0.96915 1.01512 0.95666 1.70015 1.25129 1.38427 1.20654 0.86242 0.82394 0.80400 0.77841 1.20198 1.21383 1.21823 1.20964 0.98558 0.88474 0.90442 1.22070 0.95554 0.98882 0.99966 1.21299 0.98068 0.96115 0.95598 0.91441 1.21856 1.00668 1.00863 0.96822 1.77703 0.95098 1.10917 1.24652 1.49033 1.06764 1.02975 1.60662 1.22471 0.74880 1.05504 1.03299 0.91790 0.91893 0.87438 0.81654 0.76725 0.88791 0.96370 0.93714 0.96456 0.92628 0.92635 0.92062 0.92909 0.93167 0.93141 0.90535 0.88380 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.42 101.05 0.95 1.00 16 2 O -0.29 -3.06 10.57 -19.01 -0.20 -3.26 16 3 C 0.26 3.44 7.78 -16.72 -0.13 3.31 16 4 C -0.23 -3.66 10.59 -39.46 -0.42 -4.07 16 5 C 0.07 1.18 7.09 -82.91 -0.59 0.59 16 6 C 0.59 11.63 7.79 -12.39 -0.10 11.54 16 7 O -0.51 -12.08 16.56 5.30 0.09 -11.99 16 8 N -0.70 -12.62 4.37 -54.67 -0.24 -12.86 16 9 C 0.12 2.49 2.06 -67.81 -0.14 2.35 16 10 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 11 C 0.17 4.18 4.86 -3.71 -0.02 4.17 16 12 N -0.59 -15.19 2.99 -172.31 -0.51 -15.71 16 13 C -0.26 -7.30 9.58 -15.06 -0.14 -7.44 16 14 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 15 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 16 N -0.90 -27.34 11.23 55.49 0.62 -26.72 16 17 Si 0.90 22.88 29.58 -169.99 -5.03 17.86 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 C 0.14 3.00 6.51 -3.71 -0.02 2.97 16 22 C -0.12 -2.16 5.36 -26.61 -0.14 -2.30 16 23 C -0.09 -1.53 2.27 -90.58 -0.21 -1.73 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 C -0.14 -2.00 9.02 37.16 0.34 -1.66 16 26 N -0.25 -3.75 12.26 33.34 0.41 -3.34 16 27 N -0.40 -4.70 4.04 -68.19 -0.28 -4.97 16 28 C 0.08 0.49 9.58 59.84 0.57 1.06 16 29 H 0.06 0.25 5.80 -51.93 -0.30 -0.06 16 30 H 0.06 0.25 6.55 -51.93 -0.34 -0.09 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.17 2.56 8.06 -52.48 -0.42 2.14 16 33 H 0.40 6.20 8.00 -40.82 -0.33 5.88 16 34 H 0.09 2.77 6.13 -51.93 -0.32 2.45 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 44 H 0.08 0.33 7.59 -51.93 -0.39 -0.06 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.36 4.68 -51.93 -0.24 0.11 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -35.56 368.90 -6.60 -42.16 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.89 Total: 3.36 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.13 Total: 9.92 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.00 Total: -63.60 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.11 Total: -15.25 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.56 -6.60 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967294175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.773 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds