Wall clock time and date at job start Tue Mar 31 2020 14:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35766 * 116.99994 * 2 1 4 4 C 1.35590 * 126.08449 * 180.43729 * 3 2 1 5 5 C 1.41066 * 107.80081 * 180.02562 * 4 3 2 6 6 C 1.47721 * 125.98451 * 179.97438 * 5 4 3 7 7 O 1.21575 * 119.99990 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00030 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99618 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.49720 * 324.93453 * 9 8 6 11 11 C 1.53191 * 109.49795 * 85.00336 * 9 8 6 12 12 N 1.46924 * 108.77676 * 174.58617 * 11 9 8 13 13 C 1.36931 * 120.63607 * 126.38873 * 12 11 9 14 14 H 1.08003 * 120.00451 * 209.55329 * 13 12 11 15 15 C 1.38812 * 119.99944 * 29.55180 * 13 12 11 16 16 N 1.31623 * 120.00124 * 15.74282 * 15 13 12 17 17 Si 1.86801 * 120.00250 * 195.75348 * 15 13 12 18 18 H 1.48501 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47507 * 119.99668 * 17 15 13 20 20 H 1.48498 * 109.46823 * 239.99881 * 17 15 13 21 21 C 1.46934 * 118.73262 * 306.38701 * 12 11 9 22 22 C 1.53190 * 108.77435 * 53.61374 * 21 12 11 23 23 C 1.53036 * 109.31199 * 305.35968 * 22 21 12 24 24 H 1.09002 * 109.46198 * 301.34745 * 23 22 21 25 25 C 1.53005 * 109.46084 * 181.38968 * 23 22 21 26 26 N 1.31860 * 108.03415 * 0.23721 * 5 4 3 27 27 N 1.35848 * 126.08691 * 0.46283 * 3 2 1 28 28 C 1.46496 * 125.94542 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.46994 * 309.55796 * 1 2 3 30 30 H 1.09000 * 109.47350 * 69.55499 * 1 2 3 31 31 H 1.09002 * 109.47135 * 189.55770 * 1 2 3 32 32 H 1.08004 * 126.10469 * 0.04317 * 4 3 2 33 33 H 0.96998 * 120.00108 * 359.97438 * 8 6 5 34 34 H 1.09007 * 109.58294 * 294.37033 * 11 9 8 35 35 H 1.09001 * 109.58898 * 54.79420 * 11 9 8 36 36 H 0.96996 * 119.99855 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.58630 * 293.82114 * 21 12 11 38 38 H 1.09003 * 109.69986 * 173.46779 * 21 12 11 39 39 H 1.09000 * 109.49662 * 185.41196 * 22 21 12 40 40 H 1.08999 * 109.50063 * 65.31397 * 22 21 12 41 41 H 1.08997 * 109.46784 * 299.93317 * 25 23 22 42 42 H 1.09001 * 109.46539 * 59.93474 * 25 23 22 43 43 H 1.08997 * 109.46891 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.46956 * 83.48104 * 28 27 3 45 45 H 1.08998 * 109.47276 * 203.48418 * 28 27 3 46 46 H 1.09000 * 109.47652 * 323.48407 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3842 1.4238 -0.0084 5 6 3.5980 2.8181 -0.0044 6 6 4.9110 3.4950 -0.0102 7 8 5.9337 2.8376 -0.0189 8 7 4.9753 4.8412 -0.0060 9 6 6.2775 5.5123 -0.0112 10 1 6.9895 4.9294 0.5730 11 6 6.7813 5.6396 -1.4523 12 7 8.0215 6.4274 -1.4518 13 6 9.1580 5.9400 -2.0398 14 1 10.1279 6.2318 -1.6648 15 6 9.0636 5.0707 -3.1179 16 7 7.9270 4.9535 -3.7713 17 14 10.5495 4.0669 -3.6414 18 1 11.6964 4.3795 -2.7513 19 1 10.2283 2.6203 -3.5460 20 1 10.9053 4.4036 -5.0432 21 6 8.0190 7.7484 -0.8084 22 6 7.5013 7.5974 0.6254 23 6 6.1353 6.9079 0.6004 24 1 5.4416 7.4980 0.0014 25 6 5.5993 6.7865 2.0283 26 7 2.4206 3.4116 0.0112 27 7 1.4305 2.4210 0.0089 28 6 -0.0163 2.6510 0.0196 29 1 -0.3633 0.6545 0.7923 30 1 -0.3634 0.3590 -0.9629 31 1 -0.3633 -1.0134 0.1706 32 1 4.1504 0.6626 -0.0169 33 1 4.1594 5.3657 0.0005 34 1 6.9786 4.6479 -1.8594 35 1 6.0289 6.1430 -2.0594 36 1 7.8610 4.3458 -4.5244 37 1 7.3675 8.4237 -1.3630 38 1 9.0320 8.1505 -0.7908 39 1 7.4035 8.5821 1.0825 40 1 8.2022 6.9954 1.2038 41 1 6.2924 6.1961 2.6275 42 1 5.4979 7.7805 2.4640 43 1 4.6262 6.2959 2.0106 44 1 -0.3865 2.5888 1.0430 45 1 -0.2299 3.6404 -0.3846 46 1 -0.5090 1.8948 -0.5915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967294175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:16 Heat of formation + Delta-G solvation = 18.359814 kcal Electronic energy + Delta-G solvation = -28029.779463 eV Core-core repulsion = 24150.066673 eV Total energy + Delta-G solvation = -3879.712790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.73726 -40.96662 -39.45640 -38.89750 -36.10631 -34.77979 -34.42849 -32.82354 -31.46285 -30.37610 -29.07610 -28.82864 -27.21920 -25.91586 -24.87508 -23.18064 -22.63578 -22.46595 -21.35618 -20.64013 -19.22848 -18.73872 -17.73747 -17.48119 -17.34083 -16.76978 -16.36080 -16.19725 -16.08228 -15.61629 -15.39827 -15.24308 -15.10200 -14.89681 -14.65233 -14.45820 -14.10799 -13.98557 -13.91625 -13.53952 -13.26613 -13.04250 -12.75316 -12.56616 -12.43395 -12.36149 -12.27217 -12.14360 -11.90257 -11.82086 -11.62042 -11.56428 -11.19821 -11.09483 -10.55888 -10.30538 -10.05146 -9.55973 -8.66342 -7.87776 -5.35918 0.18769 1.02610 1.08171 1.41568 1.46599 1.55091 1.77462 2.23751 2.32591 2.50726 3.06811 3.29368 3.72160 3.80803 3.87914 3.99597 4.01336 4.14600 4.19861 4.25665 4.31047 4.37699 4.49042 4.51773 4.59086 4.64997 4.68207 4.72427 4.75706 4.94139 4.98198 4.99917 5.13724 5.19187 5.19707 5.21867 5.28962 5.41978 5.46521 5.54602 5.63600 5.77642 6.09652 6.27200 6.38626 6.58054 7.11215 7.17278 7.85467 8.36024 9.17267 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.003585 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.243335 B = 7808.544569 C = 9275.001827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.299 6.299 3 C 0.284 3.716 4 C -0.268 4.268 5 C 0.046 3.954 6 C 0.591 3.409 7 O -0.566 6.566 8 N -0.688 5.688 9 C 0.139 3.861 10 H 0.057 0.943 11 C 0.180 3.820 12 N -0.608 5.608 13 C -0.263 4.263 14 H 0.069 0.931 15 C -0.051 4.051 16 N -0.932 5.932 17 Si 0.962 3.038 18 H -0.261 1.261 19 H -0.298 1.298 20 H -0.285 1.285 21 C 0.135 3.865 22 C -0.114 4.114 23 C -0.085 4.085 24 H 0.078 0.922 25 C -0.135 4.135 26 N -0.254 5.254 27 N -0.381 5.381 28 C 0.061 3.939 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.413 0.587 34 H 0.042 0.958 35 H -0.001 1.001 36 H 0.247 0.753 37 H 0.021 0.979 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.309 -2.856 12.270 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.205 6.205 3 C 0.116 3.884 4 C -0.299 4.299 5 C -0.120 4.120 6 C 0.375 3.625 7 O -0.442 6.442 8 N -0.339 5.339 9 C 0.033 3.967 10 H 0.075 0.925 11 C 0.053 3.947 12 N -0.332 5.332 13 C -0.393 4.393 14 H 0.087 0.913 15 C -0.246 4.246 16 N -0.578 5.578 17 Si 0.790 3.210 18 H -0.185 1.185 19 H -0.226 1.226 20 H -0.212 1.212 21 C 0.010 3.990 22 C -0.154 4.154 23 C -0.104 4.104 24 H 0.096 0.904 25 C -0.192 4.192 26 N -0.086 5.086 27 N -0.179 5.179 28 C -0.076 4.076 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.250 0.750 34 H 0.060 0.940 35 H 0.017 0.983 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.251 -2.579 12.152 25.484 hybrid contribution 0.729 -1.352 -0.957 1.810 sum -21.522 -3.931 11.195 24.576 Atomic orbital electron populations 1.24130 0.75114 1.07542 1.03233 1.86342 1.24614 1.20111 1.89459 1.19318 0.90412 0.80059 0.98616 1.20400 0.93537 0.95348 1.20596 1.21564 0.92345 0.93500 1.04583 1.17262 0.86308 0.82617 0.76297 1.90815 1.36026 1.66046 1.51343 1.45738 1.10209 1.05185 1.72778 1.21645 0.83163 0.93758 0.98151 0.92522 1.20754 0.86653 0.95698 0.91590 1.44218 1.08500 1.15273 1.65199 1.19527 0.86779 1.24886 1.08148 0.91312 1.25861 0.99506 1.02988 0.96257 1.70175 1.27122 1.39247 1.21223 0.85277 0.79845 0.78003 0.77827 1.18544 1.22558 1.21203 1.21190 0.99212 0.86101 0.92453 1.21967 0.95273 1.01091 0.97043 1.21274 0.98377 0.93117 0.97623 0.90364 1.21771 1.00547 1.02694 0.94225 1.77586 0.94863 1.11826 1.24360 1.49417 1.08213 1.01941 1.58360 1.23083 0.71451 1.07203 1.05912 0.89758 0.90207 0.85030 0.82971 0.74999 0.93989 0.98328 0.94435 0.96111 0.92386 0.88362 0.92868 0.93578 0.90107 0.92410 0.87744 0.87494 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.42 113.37 1.07 1.02 16 2 O -0.30 -5.78 10.57 -90.93 -0.96 -6.74 16 3 C 0.28 7.12 7.78 83.46 0.65 7.76 16 4 C -0.27 -8.83 10.59 22.35 0.24 -8.59 16 5 C 0.05 1.62 7.09 42.34 0.30 1.92 16 6 C 0.59 24.63 7.79 86.75 0.68 25.31 16 7 O -0.57 -28.80 16.56 -3.95 -0.07 -28.87 16 8 N -0.69 -25.60 4.37 -445.15 -1.94 -27.54 16 9 C 0.14 5.77 2.06 45.07 0.09 5.87 16 10 H 0.06 2.70 7.58 -2.39 -0.02 2.68 16 11 C 0.18 9.51 4.86 86.36 0.42 9.93 16 12 N -0.61 -32.42 2.99 -699.08 -2.09 -34.51 16 13 C -0.26 -15.47 9.58 84.03 0.80 -14.66 16 14 H 0.07 3.90 7.88 -2.91 -0.02 3.88 16 15 C -0.05 -3.06 4.93 84.86 0.42 -2.64 16 16 N -0.93 -59.69 11.23 21.65 0.24 -59.44 16 17 Si 0.96 48.78 29.58 68.60 2.03 50.81 16 18 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 21 C 0.14 5.64 6.51 86.36 0.56 6.21 16 22 C -0.11 -3.71 5.36 30.67 0.16 -3.55 16 23 C -0.08 -2.69 2.27 -10.77 -0.02 -2.71 16 24 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 25 C -0.14 -3.33 9.02 71.98 0.65 -2.68 16 26 N -0.25 -7.36 12.26 -48.42 -0.59 -7.96 16 27 N -0.38 -8.21 4.04 -480.57 -1.94 -10.15 16 28 C 0.06 0.52 9.58 127.77 1.22 1.74 16 29 H 0.08 0.26 5.80 -2.39 -0.01 0.24 16 30 H 0.08 0.30 6.55 -2.39 -0.02 0.28 16 31 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.15 5.20 8.06 -2.91 -0.02 5.17 16 33 H 0.41 12.81 8.00 -92.71 -0.74 12.07 16 34 H 0.04 2.65 6.13 -2.38 -0.01 2.63 16 35 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 2.35 7.94 -2.39 -0.02 2.33 16 39 H 0.10 2.42 8.14 -2.39 -0.02 2.41 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.35 7.35 -2.39 -0.02 1.33 16 44 H 0.10 0.40 7.59 -2.39 -0.02 0.38 16 45 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.12 0.35 4.68 -2.39 -0.01 0.34 16 Total: -1.00 -84.48 368.90 2.18 -82.29 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.26 Total: 17.17 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 7.24 Total: 24.94 kcal Atomic # 7 Polarization: -133.29 SS G_CDS: -6.32 Total: -139.61 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.03 Total: -35.60 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Total: -84.48 2.18 -82.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967294175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.653 kcal (2) G-P(sol) polarization free energy of solvation -84.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds