Wall clock time and date at job start Tue Mar 31 2020 14:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35770 * 117.00175 * 2 1 4 4 C 1.35593 * 126.08863 * 175.66204 * 3 2 1 5 5 C 1.41058 * 107.79846 * 180.15355 * 4 3 2 6 6 C 1.47726 * 125.97867 * 179.88617 * 5 4 3 7 7 O 1.21575 * 119.99866 * 359.44619 * 6 5 4 8 8 N 1.34769 * 120.00051 * 179.71822 * 6 5 4 9 9 C 1.46501 * 120.00297 * 179.72917 * 8 6 5 10 10 H 1.09004 * 109.49580 * 324.99586 * 9 8 6 11 11 C 1.53191 * 109.49729 * 85.06085 * 9 8 6 12 12 N 1.46995 * 108.74015 * 65.35214 * 11 9 8 13 13 C 1.36940 * 120.61446 * 233.56901 * 12 11 9 14 14 H 1.07991 * 120.00208 * 152.03324 * 13 12 11 15 15 C 1.38816 * 119.99673 * 332.03290 * 13 12 11 16 16 N 1.31623 * 119.99734 * 344.12848 * 15 13 12 17 17 Si 1.86801 * 119.99923 * 164.12425 * 15 13 12 18 18 H 1.48498 * 109.46954 * 60.00451 * 17 15 13 19 19 H 1.48505 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47167 * 300.00175 * 17 15 13 21 21 C 1.46931 * 118.75525 * 53.58293 * 12 11 9 22 22 C 1.53191 * 108.77484 * 306.39476 * 21 12 11 23 23 C 1.53036 * 109.31221 * 54.63792 * 22 21 12 24 24 H 1.09002 * 109.46325 * 58.64923 * 23 22 21 25 25 C 1.53005 * 109.45798 * 178.61008 * 23 22 21 26 26 N 1.31861 * 108.04018 * 359.62815 * 5 4 3 27 27 N 1.35849 * 126.08291 * 355.40872 * 3 2 1 28 28 C 1.46501 * 125.94819 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.46900 * 54.77671 * 1 2 3 30 30 H 1.08999 * 109.47189 * 174.77070 * 1 2 3 31 31 H 1.09001 * 109.47384 * 294.77925 * 1 2 3 32 32 H 1.07998 * 126.09766 * 0.03115 * 4 3 2 33 33 H 0.97002 * 120.00074 * 359.72296 * 8 6 5 34 34 H 1.09001 * 109.58476 * 185.10516 * 11 9 8 35 35 H 1.08992 * 109.58944 * 305.52755 * 11 9 8 36 36 H 0.97005 * 119.99121 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.58223 * 186.60776 * 21 12 11 38 38 H 1.08998 * 109.70306 * 66.25486 * 21 12 11 39 39 H 1.09000 * 109.50073 * 294.67899 * 22 21 12 40 40 H 1.09001 * 109.49462 * 174.58832 * 22 21 12 41 41 H 1.08997 * 109.46823 * 180.02562 * 25 23 22 42 42 H 1.08999 * 109.46896 * 300.06464 * 25 23 22 43 43 H 1.08996 * 109.46891 * 60.07249 * 25 23 22 44 44 H 1.09007 * 109.47061 * 276.23008 * 28 27 3 45 45 H 1.09004 * 109.47112 * 36.22518 * 28 27 3 46 46 H 1.08997 * 109.47178 * 156.23146 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3815 1.4253 0.0829 5 6 3.5960 2.8191 0.0530 6 6 4.9067 3.4972 0.1218 7 8 5.9255 2.8417 0.2235 8 7 4.9726 4.8425 0.0775 9 6 6.2719 5.5152 0.1517 10 1 6.9333 4.9567 0.8141 11 6 6.8912 5.5870 -1.2476 12 7 6.0529 6.4508 -2.0913 13 6 5.5788 6.0018 -3.2950 14 1 4.6546 6.3948 -3.6919 15 6 6.2863 5.0414 -4.0049 16 7 7.5412 4.7883 -3.6987 17 14 5.4575 4.1081 -5.3947 18 1 5.0096 5.0668 -6.4366 19 1 6.4204 3.1457 -5.9880 20 1 4.2836 3.3696 -4.8640 21 6 5.7335 7.8050 -1.6190 22 6 5.1275 7.7075 -0.2154 23 6 6.0826 6.9331 0.6956 24 1 7.0463 7.4414 0.7273 25 6 5.4965 6.8636 2.1072 26 7 2.4223 3.4108 -0.0528 27 7 1.4336 2.4194 -0.0879 28 6 -0.0093 2.6474 -0.1989 29 1 -0.3633 0.5927 -0.8395 30 1 -0.3633 -1.0234 -0.0937 31 1 -0.3634 0.4307 0.9330 32 1 4.1450 0.6654 0.1602 33 1 4.1596 5.3655 -0.0037 34 1 7.8957 6.0048 -1.1816 35 1 6.9368 4.5870 -1.6787 36 1 8.0354 4.1169 -4.1947 37 1 5.0154 8.2680 -2.2958 38 1 6.6423 8.4057 -1.5837 39 1 4.1715 7.1864 -0.2673 40 1 4.9748 8.7096 0.1853 41 1 6.1769 6.3125 2.7563 42 1 5.3617 7.8735 2.4947 43 1 4.5331 6.3547 2.0759 44 1 -0.3123 2.5565 -1.2421 45 1 -0.5412 1.9078 0.3996 46 1 -0.2481 3.6475 0.1629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967294176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:20 Heat of formation + Delta-G solvation = 48.600729 kcal Electronic energy + Delta-G solvation = -28811.221391 eV Core-core repulsion = 24932.819945 eV Total energy + Delta-G solvation = -3878.401446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.55354 -39.44990 -38.34930 -37.25382 -34.05380 -33.49549 -32.70871 -30.95292 -30.23789 -29.02296 -27.98751 -27.26861 -26.36971 -24.08561 -23.24134 -21.88981 -21.43652 -21.00621 -19.81495 -18.56314 -18.19320 -16.81846 -16.66679 -16.21199 -15.73176 -15.30275 -14.93756 -14.79520 -14.65004 -14.15805 -14.05512 -13.82967 -13.69369 -13.45150 -13.27479 -13.12379 -12.99330 -12.77408 -12.48490 -11.86600 -11.61317 -11.52922 -11.45609 -11.29918 -11.00551 -10.83270 -10.71868 -10.64906 -10.43017 -10.16164 -9.84793 -9.67649 -9.48602 -9.38556 -9.11807 -8.37375 -8.36804 -8.26316 -6.55703 -5.67819 -3.11004 1.55791 2.13014 2.35161 2.76913 3.44136 3.51241 3.51882 3.72691 3.96611 4.17759 4.49374 4.58121 4.60089 4.79003 4.91312 4.95801 5.17589 5.27119 5.32792 5.33884 5.42425 5.50868 5.60355 5.64631 5.93753 5.96813 5.98200 6.01737 6.09267 6.23132 6.36899 6.44194 6.48866 6.52720 6.62934 6.74449 6.82605 6.96617 7.07961 7.23559 7.39930 7.48719 7.77753 7.89352 8.21927 8.56046 8.82895 9.30696 9.94630 10.50071 11.39972 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.005036 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.790913 B = 5558.929223 C = 6950.307022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.289 6.289 3 C 0.262 3.738 4 C -0.233 4.233 5 C 0.071 3.929 6 C 0.596 3.404 7 O -0.531 6.531 8 N -0.680 5.680 9 C 0.124 3.876 10 H 0.078 0.922 11 C 0.159 3.841 12 N -0.587 5.587 13 C -0.251 4.251 14 H 0.062 0.938 15 C 0.007 3.993 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.143 3.857 22 C -0.130 4.130 23 C -0.093 4.093 24 H 0.078 0.922 25 C -0.145 4.145 26 N -0.248 5.248 27 N -0.397 5.397 28 C 0.078 3.922 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.164 0.836 33 H 0.402 0.598 34 H 0.027 0.973 35 H 0.100 0.900 36 H 0.254 0.746 37 H 0.052 0.948 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.460 -3.225 11.459 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.195 6.195 3 C 0.096 3.904 4 C -0.263 4.263 5 C -0.097 4.097 6 C 0.378 3.622 7 O -0.405 6.405 8 N -0.330 5.330 9 C 0.018 3.982 10 H 0.096 0.904 11 C 0.033 3.967 12 N -0.310 5.310 13 C -0.380 4.380 14 H 0.080 0.920 15 C -0.192 4.192 16 N -0.543 5.543 17 Si 0.727 3.273 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.017 3.983 22 C -0.169 4.169 23 C -0.112 4.112 24 H 0.097 0.903 25 C -0.202 4.202 26 N -0.078 5.078 27 N -0.194 5.194 28 C -0.063 4.063 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.237 0.763 34 H 0.045 0.955 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.231 -2.991 11.335 19.220 hybrid contribution -0.881 -1.000 -0.914 1.616 sum -16.112 -3.992 10.421 19.599 Atomic orbital electron populations 1.23617 0.78361 1.05115 1.01339 1.86295 1.21324 1.21816 1.90097 1.19521 0.91123 0.78860 1.00887 1.20371 0.91928 0.95853 1.18156 1.22074 0.93120 0.93002 1.01481 1.16760 0.85467 0.82467 0.77476 1.90784 1.34131 1.65240 1.50392 1.45694 1.10583 1.05144 1.71616 1.21884 0.84245 0.91106 1.00933 0.90353 1.21250 0.91005 0.98527 0.85942 1.43976 1.59701 1.08524 1.18768 1.19025 1.02336 1.20760 0.95924 0.92049 1.24982 0.94844 1.01525 0.97806 1.69971 1.07263 1.34621 1.42418 0.86455 0.78750 0.79912 0.82157 1.21051 1.21575 1.21248 1.20918 0.96896 0.88274 0.92233 1.22091 0.98562 0.98495 0.97797 1.21307 0.99978 0.95849 0.94085 0.90331 1.21856 1.00941 1.00827 0.96606 1.77743 0.95296 1.10753 1.24057 1.49034 1.07043 1.03074 1.60298 1.22490 0.75137 1.05334 1.03307 0.91758 0.87463 0.92039 0.81795 0.76252 0.95540 0.88233 0.93566 0.92916 0.96441 0.92610 0.92814 0.93057 0.93185 0.92988 0.90484 0.88788 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.38 101.05 0.95 1.02 16 2 O -0.29 -3.48 10.57 -19.02 -0.20 -3.68 16 3 C 0.26 3.85 7.78 -16.72 -0.13 3.72 16 4 C -0.23 -4.05 10.59 -39.46 -0.42 -4.47 16 5 C 0.07 1.35 7.09 -82.91 -0.59 0.76 16 6 C 0.60 12.54 7.79 -12.39 -0.10 12.45 16 7 O -0.53 -12.60 16.56 5.30 0.09 -12.51 16 8 N -0.68 -13.29 4.25 -54.67 -0.23 -13.52 16 9 C 0.12 2.45 2.24 -67.81 -0.15 2.30 16 10 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 11 C 0.16 3.91 4.90 -3.67 -0.02 3.89 16 12 N -0.59 -14.61 2.91 -172.27 -0.50 -15.11 16 13 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 14 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 15 C 0.01 0.21 4.95 -17.43 -0.09 0.13 16 16 N -0.90 -27.07 11.11 55.49 0.62 -26.45 16 17 Si 0.90 22.91 29.58 -169.99 -5.03 17.88 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 C 0.14 2.93 6.52 -3.71 -0.02 2.91 16 22 C -0.13 -2.15 5.20 -26.61 -0.14 -2.29 16 23 C -0.09 -1.51 2.48 -90.58 -0.22 -1.74 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 C -0.14 -1.96 9.05 37.16 0.34 -1.63 16 26 N -0.25 -4.25 12.26 33.34 0.41 -3.85 16 27 N -0.40 -5.48 4.04 -68.18 -0.28 -5.76 16 28 C 0.08 0.63 9.62 59.85 0.58 1.20 16 29 H 0.06 0.36 5.92 -51.93 -0.31 0.05 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.30 6.59 -51.93 -0.34 -0.04 16 32 H 0.16 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.40 7.44 6.33 -40.82 -0.26 7.18 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 2.88 6.01 -51.93 -0.31 2.57 16 36 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 44 H 0.08 0.54 7.72 -51.93 -0.40 0.14 16 45 H 0.09 0.47 4.51 -51.93 -0.23 0.23 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -34.77 365.70 -6.51 -41.28 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.74 Total: 5.07 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -0.16 Total: 11.13 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: 0.02 Total: -64.69 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.11 Total: -16.19 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.03 Total: 17.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.77 -6.51 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967294176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.885 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds