Wall clock time and date at job start Tue Mar 31 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35853 * 116.99605 * 2 1 4 4 N 1.30803 * 126.05998 * 0.02815 * 3 2 1 5 5 N 1.39923 * 108.87826 * 179.97438 * 4 3 2 6 6 C 1.46506 * 125.68582 * 179.97438 * 5 4 3 7 7 C 1.34156 * 108.62519 * 0.26376 * 5 4 3 8 8 C 1.38136 * 107.50826 * 359.57916 * 7 5 4 9 9 C 1.47245 * 126.44877 * 180.12227 * 8 7 5 10 10 O 1.21628 * 120.00159 * 180.34585 * 9 8 7 11 11 N 1.34780 * 120.00129 * 0.34972 * 9 8 7 12 12 C 1.46499 * 119.99942 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.49650 * 34.93373 * 12 11 9 14 14 C 1.53193 * 109.49693 * 274.83768 * 12 11 9 15 15 N 1.46932 * 108.77495 * 294.68584 * 14 12 11 16 16 C 1.36934 * 120.62815 * 126.37471 * 15 14 12 17 17 H 1.07998 * 119.99365 * 207.69563 * 16 15 14 18 18 C 1.38808 * 120.00565 * 27.69386 * 16 15 14 19 19 N 1.31622 * 119.99671 * 17.35390 * 18 16 15 20 20 Si 1.86800 * 120.00169 * 197.35384 * 18 16 15 21 21 H 1.48493 * 109.47294 * 59.99816 * 20 18 16 22 22 H 1.48505 * 109.47004 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46896 * 299.99870 * 20 18 16 24 24 C 1.46925 * 118.73801 * 306.38821 * 15 14 12 25 25 C 1.53199 * 108.77270 * 53.61207 * 24 15 14 26 26 C 1.53037 * 109.31276 * 305.36150 * 25 24 15 27 27 H 1.09002 * 109.45157 * 301.35617 * 26 25 24 28 28 C 1.53004 * 109.46162 * 181.38536 * 26 25 24 29 29 H 1.08999 * 109.47061 * 299.99772 * 1 2 3 30 30 H 1.08990 * 109.47217 * 60.00136 * 1 2 3 31 31 H 1.08998 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47150 * 90.02742 * 6 5 4 33 33 H 1.08997 * 109.47157 * 330.02261 * 6 5 4 34 34 H 1.09002 * 109.46784 * 210.02301 * 6 5 4 35 35 H 1.07995 * 126.24751 * 179.73778 * 7 5 4 36 36 H 0.96997 * 119.99929 * 0.02562 * 11 9 8 37 37 H 1.08995 * 109.59028 * 54.47605 * 14 12 11 38 38 H 1.09004 * 109.58712 * 174.90100 * 14 12 11 39 39 H 0.96996 * 119.99857 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.58822 * 293.82579 * 24 15 14 41 41 H 1.08994 * 109.70320 * 173.46613 * 24 15 14 42 42 H 1.09006 * 109.49660 * 185.41287 * 25 24 15 43 43 H 1.08993 * 109.49576 * 65.31303 * 25 24 15 44 44 H 1.08998 * 109.46614 * 299.93480 * 28 26 25 45 45 H 1.08997 * 109.46804 * 59.93317 * 28 26 25 46 46 H 1.09000 * 109.47411 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3765 0.0005 5 7 2.4281 3.3800 0.0009 6 6 2.1703 4.8222 0.0010 7 6 3.6384 2.8014 -0.0052 8 6 3.4452 1.4336 0.0001 9 6 4.4955 0.4017 -0.0011 10 8 4.1912 -0.7759 -0.0023 11 7 5.7943 0.7621 -0.0009 12 6 6.8393 -0.2646 -0.0015 13 1 6.5085 -1.1201 -0.5904 14 6 7.1187 -0.7108 1.4371 15 7 7.6855 0.4219 2.1819 16 6 7.1242 0.8321 3.3616 17 1 7.2163 1.8617 3.6742 18 6 6.4369 -0.0755 4.1558 19 7 6.6034 -1.3682 3.9728 20 14 5.2757 0.5379 5.4843 21 1 4.2030 1.3567 4.8648 22 1 4.6705 -0.6221 6.1869 23 1 6.0311 1.3665 6.4580 24 6 8.8657 1.1063 1.6365 25 6 8.5667 1.5321 0.1956 26 6 8.1200 0.3105 -0.6108 27 1 8.9044 -0.4461 -0.5881 28 6 7.8536 0.7254 -2.0592 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 2.1065 5.1799 1.0287 33 1 1.2302 5.0233 -0.5127 34 1 2.9824 5.3365 -0.5129 35 1 4.5902 3.3117 -0.0105 36 1 6.0370 1.7012 0.0005 37 1 6.1887 -1.0291 1.9082 38 1 7.8296 -1.5371 1.4320 39 1 6.1228 -2.0024 4.5275 40 1 9.7190 0.4281 1.6475 41 1 9.0908 1.9867 2.2384 42 1 9.4657 1.9550 -0.2528 43 1 7.7729 2.2790 0.1942 44 1 7.0689 1.4815 -2.0821 45 1 8.7657 1.1350 -2.4934 46 1 7.5359 -0.1447 -2.6339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967708907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:26 Heat of formation + Delta-G solvation = 34.288348 kcal Electronic energy + Delta-G solvation = -29073.329496 eV Core-core repulsion = 25194.307419 eV Total energy + Delta-G solvation = -3879.022077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.34096 -39.17113 -38.12331 -37.15732 -34.01901 -32.87309 -32.62597 -30.98837 -30.43990 -28.80300 -27.84439 -27.23786 -26.09913 -24.02073 -22.84393 -21.91502 -21.01363 -20.84034 -20.04417 -18.54729 -17.84395 -16.83803 -16.51673 -16.17729 -15.60231 -15.08867 -14.95143 -14.82245 -14.69211 -14.02519 -13.87861 -13.68601 -13.55863 -13.22869 -12.97887 -12.86731 -12.71717 -12.53180 -12.45573 -11.89250 -11.83851 -11.51838 -11.28997 -11.13882 -11.01399 -10.84751 -10.73206 -10.65574 -10.44033 -10.17575 -9.84906 -9.61005 -9.40942 -9.12769 -9.03899 -8.38598 -8.36677 -8.08976 -6.56337 -5.68532 -3.11139 1.62219 2.22195 2.49386 3.35044 3.43068 3.50374 3.51419 3.95776 4.16734 4.38880 4.57316 4.69637 4.94941 5.07860 5.19701 5.26947 5.29489 5.30772 5.31029 5.42159 5.50317 5.53660 5.56525 5.63508 5.79878 5.89002 5.94741 6.00003 6.08837 6.20544 6.38310 6.44889 6.51212 6.64179 6.76459 6.79661 6.82211 6.96044 7.13639 7.32040 7.53375 7.70534 7.78588 7.90069 8.35206 8.55582 9.10009 9.29971 9.94661 10.50116 11.39258 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.005687 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.613420 B = 4922.250437 C = 6039.625650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.264 6.264 3 C 0.314 3.686 4 N -0.358 5.358 5 N -0.354 5.354 6 C 0.103 3.897 7 C 0.120 3.880 8 C -0.276 4.276 9 C 0.591 3.409 10 O -0.538 6.538 11 N -0.699 5.699 12 C 0.129 3.871 13 H 0.076 0.924 14 C 0.160 3.840 15 N -0.586 5.586 16 C -0.254 4.254 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.143 3.857 25 C -0.128 4.128 26 C -0.094 4.094 27 H 0.076 0.924 28 C -0.143 4.143 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.187 0.813 36 H 0.389 0.611 37 H 0.098 0.902 38 H 0.023 0.977 39 H 0.254 0.746 40 H 0.017 0.983 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 11.863 -12.354 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.166 6.166 3 C 0.109 3.891 4 N -0.198 5.198 5 N -0.136 5.136 6 C -0.038 4.038 7 C -0.032 4.032 8 C -0.291 4.291 9 C 0.378 3.622 10 O -0.415 6.415 11 N -0.349 5.349 12 C 0.023 3.977 13 H 0.094 0.906 14 C 0.033 3.967 15 N -0.309 5.309 16 C -0.383 4.383 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.016 3.984 25 C -0.167 4.167 26 C -0.113 4.113 27 H 0.095 0.905 28 C -0.201 4.201 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.204 0.796 36 H 0.223 0.777 37 H 0.116 0.884 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.568 11.231 -12.232 17.857 hybrid contribution -0.007 0.562 0.889 1.052 sum -6.575 11.792 -11.342 17.633 Atomic orbital electron populations 1.22993 0.78240 1.03587 1.01664 1.86548 1.21337 1.20463 1.88248 1.20415 0.90274 0.85096 0.93317 1.77226 1.13242 0.94637 1.34709 1.47573 1.03203 1.06260 1.56577 1.21944 1.04152 0.73892 1.03842 1.23010 0.90987 0.92298 0.96860 1.19888 0.92023 0.92750 1.24457 1.16931 0.81630 0.87298 0.76388 1.90779 1.82229 1.17966 1.50524 1.45587 1.04761 1.09660 1.74909 1.21726 0.85478 0.90116 1.00361 0.90637 1.21219 1.00052 0.88480 0.86937 1.43957 1.28441 1.35993 1.22495 1.18982 1.29966 0.92739 0.96644 0.92073 1.24970 1.01344 0.95149 0.97579 1.69981 1.42741 1.00150 1.41089 0.86479 0.81509 0.77688 0.81714 1.21233 1.21646 1.21090 1.20913 0.90152 0.95873 0.91450 1.22073 0.99637 0.96748 0.98239 1.21316 0.97573 0.98519 0.93912 0.90533 1.21838 1.00683 1.01082 0.96447 0.92637 0.92739 0.88175 0.90327 0.89149 0.89010 0.79587 0.77709 0.88400 0.95876 0.93559 0.96550 0.92966 0.92928 0.92873 0.93085 0.93319 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 101.05 1.08 1.49 16 2 O -0.26 -4.95 9.99 -24.63 -0.25 -5.19 16 3 C 0.31 5.80 7.85 -16.66 -0.13 5.67 16 4 N -0.36 -5.72 11.90 30.79 0.37 -5.35 16 5 N -0.35 -4.49 3.97 -67.59 -0.27 -4.76 16 6 C 0.10 0.72 11.44 59.85 0.68 1.40 16 7 C 0.12 1.61 10.98 -16.57 -0.18 1.42 16 8 C -0.28 -5.01 6.14 -104.95 -0.64 -5.65 16 9 C 0.59 12.35 7.78 -12.60 -0.10 12.25 16 10 O -0.54 -13.44 16.09 -0.10 0.00 -13.44 16 11 N -0.70 -12.83 4.24 -54.82 -0.23 -13.06 16 12 C 0.13 2.51 2.24 -67.81 -0.15 2.36 16 13 H 0.08 1.55 7.57 -51.93 -0.39 1.15 16 14 C 0.16 3.90 4.91 -3.71 -0.02 3.89 16 15 N -0.59 -14.21 2.91 -172.31 -0.50 -14.71 16 16 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 17 H 0.06 1.62 7.89 -52.49 -0.41 1.20 16 18 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 19 N -0.90 -27.07 11.19 55.49 0.62 -26.45 16 20 Si 0.90 22.73 29.59 -169.99 -5.03 17.70 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.14 2.81 6.51 -3.71 -0.02 2.78 16 25 C -0.13 -1.96 5.20 -26.61 -0.14 -2.10 16 26 C -0.09 -1.47 2.48 -90.58 -0.22 -1.70 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 28 C -0.14 -1.83 9.05 37.16 0.34 -1.49 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.19 1.72 7.46 -52.49 -0.39 1.33 16 36 H 0.39 6.12 5.56 -40.82 -0.23 5.89 16 37 H 0.10 2.86 6.03 -51.93 -0.31 2.54 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 1.01 7.94 -51.93 -0.41 0.59 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 44 H 0.05 0.63 7.55 -51.93 -0.39 0.23 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -36.88 373.38 -6.49 -43.37 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.08 Total: 2.83 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 0.26 Total: 13.46 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.02 Total: -64.34 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.25 Total: -18.63 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.88 -6.49 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967708907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.656 kcal (2) G-P(sol) polarization free energy of solvation -36.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds