Wall clock time and date at job start Tue Mar 31 2020 14:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35850 * 117.00458 * 2 1 4 4 N 1.30810 * 126.05561 * 0.16886 * 3 2 1 5 5 N 1.39924 * 108.88039 * 180.30101 * 4 3 2 6 6 C 1.46492 * 125.68907 * 179.69091 * 5 4 3 7 7 C 1.34162 * 108.61840 * 359.71253 * 5 4 3 8 8 C 1.38133 * 107.51202 * 0.02562 * 7 5 4 9 9 C 1.47247 * 126.44842 * 179.97438 * 8 7 5 10 10 O 1.21621 * 120.00004 * 180.02562 * 9 8 7 11 11 N 1.34772 * 119.99991 * 0.02739 * 9 8 7 12 12 C 1.46499 * 120.00220 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.49435 * 325.06397 * 12 11 9 14 14 C 1.53199 * 109.50039 * 85.15828 * 12 11 9 15 15 N 1.46918 * 108.77751 * 174.58884 * 14 12 11 16 16 C 1.36931 * 120.63209 * 126.36875 * 15 14 12 17 17 H 1.07998 * 120.00833 * 207.69474 * 16 15 14 18 18 C 1.38819 * 120.00043 * 27.69268 * 16 15 14 19 19 N 1.31621 * 119.99405 * 17.36252 * 18 16 15 20 20 Si 1.86793 * 120.00445 * 197.36030 * 18 16 15 21 21 H 1.48509 * 109.47052 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47262 * 120.00032 * 20 18 16 23 23 H 1.48493 * 109.47704 * 240.00334 * 20 18 16 24 24 C 1.46927 * 118.74094 * 306.39486 * 15 14 12 25 25 C 1.53191 * 108.77739 * 53.60592 * 24 15 14 26 26 C 1.53041 * 109.50067 * 204.99581 * 12 11 9 27 27 H 1.08993 * 109.46414 * 298.70437 * 26 12 11 28 28 C 1.53003 * 109.45553 * 58.66368 * 26 12 11 29 29 H 1.09005 * 109.47225 * 300.00477 * 1 2 3 30 30 H 1.09001 * 109.46650 * 60.00039 * 1 2 3 31 31 H 1.08997 * 109.47372 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47476 * 270.02138 * 6 5 4 33 33 H 1.09000 * 109.47448 * 30.02767 * 6 5 4 34 34 H 1.09005 * 109.46850 * 150.02354 * 6 5 4 35 35 H 1.08001 * 126.24307 * 180.02562 * 7 5 4 36 36 H 0.97001 * 120.00154 * 0.27297 * 11 9 8 37 37 H 1.08997 * 109.58314 * 294.37671 * 14 12 11 38 38 H 1.08996 * 109.58262 * 54.79821 * 14 12 11 39 39 H 0.97002 * 119.99676 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.58193 * 293.82189 * 24 15 14 41 41 H 1.08996 * 109.70801 * 173.46712 * 24 15 14 42 42 H 1.08994 * 109.49811 * 185.42113 * 25 24 15 43 43 H 1.08997 * 109.49507 * 65.31612 * 25 24 15 44 44 H 1.09002 * 109.47662 * 59.99947 * 28 26 12 45 45 H 1.09003 * 109.46873 * 180.02562 * 28 26 12 46 46 H 1.08999 * 109.47063 * 299.99607 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4532 2.3765 0.0031 5 7 2.4283 3.3800 -0.0051 6 6 2.1706 4.8221 -0.0111 7 6 3.6386 2.8011 -0.0069 8 6 3.4452 1.4334 -0.0006 9 6 4.4955 0.4014 -0.0005 10 8 4.1911 -0.7761 0.0050 11 7 5.7942 0.7617 -0.0066 12 6 6.8392 -0.2651 -0.0060 13 1 6.5104 -1.1184 0.5871 14 6 7.1135 -0.7164 -1.4440 15 7 8.2499 -1.6476 -1.4388 16 6 8.1407 -2.8849 -2.0153 17 1 8.7446 -3.7042 -1.6543 18 6 7.2535 -3.0862 -3.0638 19 7 6.7759 -2.0556 -3.7287 20 14 6.7377 -4.8196 -3.5312 21 1 7.4105 -5.7947 -2.6357 22 1 5.2654 -4.9529 -3.3903 23 1 7.1266 -5.0894 -4.9387 24 6 9.5056 -1.2264 -0.8028 25 6 9.2045 -0.7694 0.6280 26 6 8.1221 0.3121 0.5967 27 1 8.4636 1.1502 -0.0106 28 6 7.8433 0.7955 2.0213 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.1027 5.1748 -1.0402 33 1 1.2326 5.0257 0.5054 34 1 2.9848 5.3388 0.4971 35 1 4.5905 3.3114 -0.0124 36 1 6.0371 1.7008 -0.0070 37 1 6.2322 -1.2176 -1.8441 38 1 7.3543 0.1504 -2.0594 39 1 6.1557 -2.1962 -4.4612 40 1 9.9414 -0.4011 -1.3659 41 1 10.2045 -2.0625 -0.7799 42 1 10.1105 -0.3644 1.0788 43 1 8.8537 -1.6183 1.2148 44 1 7.5011 -0.0422 2.6290 45 1 8.7568 1.2071 2.4506 46 1 7.0733 1.5667 1.9991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967708908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:29 Heat of formation + Delta-G solvation = 32.707079 kcal Electronic energy + Delta-G solvation = -28329.676150 eV Core-core repulsion = 24450.585504 eV Total energy + Delta-G solvation = -3879.090646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48570 -39.10913 -38.22992 -37.26802 -34.19155 -33.04453 -32.91660 -30.95027 -30.55380 -28.56407 -27.93948 -27.26277 -26.19365 -24.00717 -23.06268 -21.75050 -21.05872 -20.78771 -19.76634 -19.33111 -17.84519 -16.80210 -16.68755 -16.29702 -15.70160 -15.32668 -15.06177 -14.93969 -14.71665 -14.02816 -13.86691 -13.65167 -13.46230 -13.33946 -13.11820 -12.96129 -12.78596 -12.63214 -12.31221 -11.97240 -11.89260 -11.56812 -11.50806 -11.24069 -10.86535 -10.82185 -10.63302 -10.51875 -10.35500 -10.06360 -9.86726 -9.80032 -9.39821 -9.20638 -9.18149 -8.52690 -8.33223 -8.26984 -6.56208 -5.66280 -3.09160 1.45802 2.08544 2.35608 3.23789 3.49392 3.58056 3.59178 3.78211 3.95499 4.25335 4.52677 4.63070 4.82283 4.94943 5.07981 5.19379 5.23766 5.25473 5.32802 5.37372 5.48031 5.49262 5.54863 5.65229 5.73001 5.76108 5.99701 6.07855 6.10806 6.20414 6.33517 6.48395 6.53443 6.64157 6.65708 6.82031 6.85748 7.04381 7.13664 7.19864 7.42292 7.58831 7.85011 7.94051 8.16266 8.57933 8.93863 9.32740 9.96956 10.51433 11.41621 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004287 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.461394 B = 6530.183131 C = 8119.788432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.264 6.264 3 C 0.315 3.685 4 N -0.356 5.356 5 N -0.353 5.353 6 C 0.102 3.898 7 C 0.117 3.883 8 C -0.279 4.279 9 C 0.587 3.413 10 O -0.522 6.522 11 N -0.719 5.719 12 C 0.127 3.873 13 H 0.082 0.918 14 C 0.167 3.833 15 N -0.589 5.589 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.898 5.898 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.292 1.292 24 C 0.143 3.857 25 C -0.125 4.125 26 C -0.092 4.092 27 H 0.065 0.935 28 C -0.143 4.143 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.188 0.812 36 H 0.386 0.614 37 H 0.096 0.904 38 H 0.015 0.985 39 H 0.252 0.748 40 H 0.017 0.983 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 16.793 10.452 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.165 6.165 3 C 0.110 3.890 4 N -0.197 5.197 5 N -0.135 5.135 6 C -0.039 4.039 7 C -0.035 4.035 8 C -0.294 4.294 9 C 0.373 3.627 10 O -0.397 6.397 11 N -0.370 5.370 12 C 0.022 3.978 13 H 0.100 0.900 14 C 0.040 3.960 15 N -0.311 5.311 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.219 1.219 24 C 0.016 3.984 25 C -0.165 4.165 26 C -0.111 4.111 27 H 0.084 0.916 28 C -0.201 4.201 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.205 0.795 36 H 0.218 0.782 37 H 0.114 0.886 38 H 0.034 0.966 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.138 16.266 10.305 20.905 hybrid contribution 0.254 -0.447 -0.387 0.643 sum -7.885 15.819 9.919 20.268 Atomic orbital electron populations 1.23015 0.78037 1.03757 1.01690 1.86566 1.21503 1.20349 1.88102 1.20439 0.90260 0.85155 0.93112 1.77274 1.13140 0.94621 1.34653 1.47609 1.03214 1.06340 1.56366 1.21957 1.04305 0.73783 1.03845 1.23017 0.91082 0.92207 0.97174 1.19910 0.92077 0.92688 1.24772 1.17005 0.81543 0.87455 0.76702 1.90850 1.81944 1.17876 1.49060 1.45833 1.05446 1.09527 1.76179 1.21930 0.84718 0.89689 1.01447 0.90004 1.21107 0.93145 0.92507 0.89285 1.43970 1.06422 1.15355 1.65392 1.19173 1.22699 0.86128 1.10522 0.91635 1.25010 1.01375 0.97068 0.95730 1.70024 1.34099 1.28730 1.21358 0.86267 0.78592 0.84550 0.77617 1.20219 1.21384 1.21864 1.20943 0.89648 0.97248 0.90530 1.22069 0.96726 0.97744 0.99979 1.21303 0.95865 0.98393 0.95530 0.91611 1.21843 1.00440 1.00797 0.96972 0.92673 0.92571 0.88056 0.90289 0.89055 0.88973 0.79475 0.78159 0.88622 0.96648 0.93763 0.96552 0.92715 0.92745 0.92106 0.92920 0.93298 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 101.05 1.08 1.46 16 2 O -0.26 -4.68 9.98 -24.63 -0.25 -4.93 16 3 C 0.32 5.33 7.85 -16.66 -0.13 5.20 16 4 N -0.36 -5.11 11.90 30.79 0.37 -4.74 16 5 N -0.35 -3.78 3.97 -67.60 -0.27 -4.05 16 6 C 0.10 0.53 11.44 59.84 0.68 1.21 16 7 C 0.12 1.28 10.98 -16.57 -0.18 1.10 16 8 C -0.28 -4.52 6.14 -104.95 -0.64 -5.16 16 9 C 0.59 11.49 7.78 -12.60 -0.10 11.39 16 10 O -0.52 -12.96 16.09 -0.10 0.00 -12.97 16 11 N -0.72 -12.13 4.36 -54.82 -0.24 -12.37 16 12 C 0.13 2.54 2.06 -67.81 -0.14 2.40 16 13 H 0.08 1.89 7.58 -51.93 -0.39 1.50 16 14 C 0.17 4.16 4.89 -3.71 -0.02 4.14 16 15 N -0.59 -15.26 2.99 -172.32 -0.52 -15.78 16 16 C -0.26 -7.35 9.59 -15.06 -0.14 -7.50 16 17 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 18 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 19 N -0.90 -27.54 11.19 55.49 0.62 -26.92 16 20 Si 0.90 23.18 29.59 -169.99 -5.03 18.15 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 C 0.14 3.00 6.51 -3.71 -0.02 2.98 16 25 C -0.13 -2.14 5.36 -26.61 -0.14 -2.29 16 26 C -0.09 -1.47 2.27 -90.57 -0.21 -1.68 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 C -0.14 -1.86 9.02 37.16 0.34 -1.53 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.19 1.16 7.46 -52.49 -0.39 0.77 16 36 H 0.39 4.88 7.21 -40.82 -0.29 4.59 16 37 H 0.10 2.86 6.04 -51.93 -0.31 2.54 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.57 7.35 -51.93 -0.38 0.18 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -38.62 376.51 -6.59 -45.21 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.23 Total: 0.86 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 0.29 Total: 11.85 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.04 Total: -63.85 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.25 Total: -17.89 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.03 Total: 18.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.62 -6.59 -45.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967708908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.917 kcal (2) G-P(sol) polarization free energy of solvation -38.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds