Wall clock time and date at job start Tue Mar 31 2020 14:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35850 * 117.00458 * 2 1 4 4 N 1.30810 * 126.05561 * 0.16886 * 3 2 1 5 5 N 1.39924 * 108.88039 * 180.30101 * 4 3 2 6 6 C 1.46492 * 125.68907 * 179.69091 * 5 4 3 7 7 C 1.34162 * 108.61840 * 359.71253 * 5 4 3 8 8 C 1.38133 * 107.51202 * 0.02562 * 7 5 4 9 9 C 1.47247 * 126.44842 * 179.97438 * 8 7 5 10 10 O 1.21621 * 120.00004 * 180.02562 * 9 8 7 11 11 N 1.34772 * 119.99991 * 0.02739 * 9 8 7 12 12 C 1.46499 * 120.00220 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.49435 * 325.06397 * 12 11 9 14 14 C 1.53199 * 109.50039 * 85.15828 * 12 11 9 15 15 N 1.46918 * 108.77751 * 174.58884 * 14 12 11 16 16 C 1.36931 * 120.63209 * 126.36875 * 15 14 12 17 17 H 1.07998 * 120.00833 * 207.69474 * 16 15 14 18 18 C 1.38819 * 120.00043 * 27.69268 * 16 15 14 19 19 N 1.31621 * 119.99405 * 17.36252 * 18 16 15 20 20 Si 1.86793 * 120.00445 * 197.36030 * 18 16 15 21 21 H 1.48509 * 109.47052 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47262 * 120.00032 * 20 18 16 23 23 H 1.48493 * 109.47704 * 240.00334 * 20 18 16 24 24 C 1.46927 * 118.74094 * 306.39486 * 15 14 12 25 25 C 1.53191 * 108.77739 * 53.60592 * 24 15 14 26 26 C 1.53041 * 109.50067 * 204.99581 * 12 11 9 27 27 H 1.08993 * 109.46414 * 298.70437 * 26 12 11 28 28 C 1.53003 * 109.45553 * 58.66368 * 26 12 11 29 29 H 1.09005 * 109.47225 * 300.00477 * 1 2 3 30 30 H 1.09001 * 109.46650 * 60.00039 * 1 2 3 31 31 H 1.08997 * 109.47372 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47476 * 270.02138 * 6 5 4 33 33 H 1.09000 * 109.47448 * 30.02767 * 6 5 4 34 34 H 1.09005 * 109.46850 * 150.02354 * 6 5 4 35 35 H 1.08001 * 126.24307 * 180.02562 * 7 5 4 36 36 H 0.97001 * 120.00154 * 0.27297 * 11 9 8 37 37 H 1.08997 * 109.58314 * 294.37671 * 14 12 11 38 38 H 1.08996 * 109.58262 * 54.79821 * 14 12 11 39 39 H 0.97002 * 119.99676 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.58193 * 293.82189 * 24 15 14 41 41 H 1.08996 * 109.70801 * 173.46712 * 24 15 14 42 42 H 1.08994 * 109.49811 * 185.42113 * 25 24 15 43 43 H 1.08997 * 109.49507 * 65.31612 * 25 24 15 44 44 H 1.09002 * 109.47662 * 59.99947 * 28 26 12 45 45 H 1.09003 * 109.46873 * 180.02562 * 28 26 12 46 46 H 1.08999 * 109.47063 * 299.99607 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4532 2.3765 0.0031 5 7 2.4283 3.3800 -0.0051 6 6 2.1706 4.8221 -0.0111 7 6 3.6386 2.8011 -0.0069 8 6 3.4452 1.4334 -0.0006 9 6 4.4955 0.4014 -0.0005 10 8 4.1911 -0.7761 0.0050 11 7 5.7942 0.7617 -0.0066 12 6 6.8392 -0.2651 -0.0060 13 1 6.5104 -1.1184 0.5871 14 6 7.1135 -0.7164 -1.4440 15 7 8.2499 -1.6476 -1.4388 16 6 8.1407 -2.8849 -2.0153 17 1 8.7446 -3.7042 -1.6543 18 6 7.2535 -3.0862 -3.0638 19 7 6.7759 -2.0556 -3.7287 20 14 6.7377 -4.8196 -3.5312 21 1 7.4105 -5.7947 -2.6357 22 1 5.2654 -4.9529 -3.3903 23 1 7.1266 -5.0894 -4.9387 24 6 9.5056 -1.2264 -0.8028 25 6 9.2045 -0.7694 0.6280 26 6 8.1221 0.3121 0.5967 27 1 8.4636 1.1502 -0.0106 28 6 7.8433 0.7955 2.0213 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.1027 5.1748 -1.0402 33 1 1.2326 5.0257 0.5054 34 1 2.9848 5.3388 0.4971 35 1 4.5905 3.3114 -0.0124 36 1 6.0371 1.7008 -0.0070 37 1 6.2322 -1.2176 -1.8441 38 1 7.3543 0.1504 -2.0594 39 1 6.1557 -2.1962 -4.4612 40 1 9.9414 -0.4011 -1.3659 41 1 10.2045 -2.0625 -0.7799 42 1 10.1105 -0.3644 1.0788 43 1 8.8537 -1.6183 1.2148 44 1 7.5011 -0.0422 2.6290 45 1 8.7568 1.2071 2.4506 46 1 7.0733 1.5667 1.9991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967708908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:28 Heat of formation + Delta-G solvation = 1.517136 kcal Electronic energy + Delta-G solvation = -28331.028647 eV Core-core repulsion = 24450.585504 eV Total energy + Delta-G solvation = -3880.443144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.52109 -40.64364 -39.35430 -38.89478 -36.01368 -34.62185 -33.81921 -32.80648 -31.80956 -30.08863 -28.92115 -28.83520 -27.12304 -25.85341 -24.45333 -23.08889 -22.59584 -21.91938 -21.26787 -20.80235 -19.01288 -18.72901 -17.94548 -17.34704 -17.05624 -16.83534 -16.43416 -16.01819 -15.94046 -15.67266 -15.50542 -15.18909 -15.00315 -14.82727 -14.44849 -14.06693 -13.92891 -13.55590 -13.48885 -13.42850 -13.22551 -13.00578 -12.87591 -12.75461 -12.54046 -12.28710 -12.16855 -12.10837 -11.94013 -11.87177 -11.57194 -11.40220 -11.14054 -10.78230 -10.53312 -10.23849 -9.99060 -9.48608 -8.66452 -7.87889 -5.32810 0.50743 1.12045 1.28570 1.38731 1.44990 1.52418 2.18262 2.42888 2.52336 2.55915 3.28819 3.39934 3.77094 3.81016 3.91247 4.06384 4.20645 4.22255 4.28585 4.30920 4.38136 4.51185 4.52231 4.55210 4.60471 4.68963 4.70881 4.75250 4.79266 4.79542 4.98721 5.04530 5.17990 5.24029 5.28476 5.37447 5.53117 5.56314 5.59009 5.65320 5.85884 5.89449 6.15458 6.38323 6.49928 6.83530 7.13936 7.53081 7.88378 8.36263 9.16508 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004287 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.461394 B = 6530.183131 C = 8119.788432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.289 3.711 4 N -0.368 5.368 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.158 3.842 8 C -0.331 4.331 9 C 0.584 3.416 10 O -0.592 6.592 11 N -0.700 5.700 12 C 0.144 3.856 13 H 0.042 0.958 14 C 0.179 3.821 15 N -0.610 5.610 16 C -0.262 4.262 17 H 0.068 0.932 18 C -0.050 4.050 19 N -0.930 5.930 20 Si 0.957 3.043 21 H -0.262 1.262 22 H -0.302 1.302 23 H -0.283 1.283 24 C 0.136 3.864 25 C -0.117 4.117 26 C -0.083 4.083 27 H 0.085 0.915 28 C -0.134 4.134 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.244 0.756 36 H 0.411 0.589 37 H 0.038 0.962 38 H 0.002 0.998 39 H 0.245 0.755 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 20.455 12.207 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.208 6.208 3 C 0.084 3.916 4 N -0.209 5.209 5 N -0.120 5.120 6 C -0.050 4.050 7 C 0.003 3.997 8 C -0.346 4.346 9 C 0.373 3.627 10 O -0.473 6.473 11 N -0.352 5.352 12 C 0.037 3.963 13 H 0.060 0.940 14 C 0.052 3.948 15 N -0.334 5.334 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.576 5.576 20 Si 0.786 3.214 21 H -0.186 1.186 22 H -0.229 1.229 23 H -0.210 1.210 24 C 0.011 3.989 25 C -0.156 4.156 26 C -0.102 4.102 27 H 0.104 0.896 28 C -0.192 4.192 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.260 0.740 36 H 0.248 0.752 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.098 0.902 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.737 20.014 12.090 24.334 hybrid contribution -0.194 -1.432 -0.935 1.721 sum -6.931 18.583 11.156 22.755 Atomic orbital electron populations 1.23215 0.76020 1.05011 1.02417 1.86486 1.23892 1.22017 1.88385 1.20766 0.90936 0.85447 0.94403 1.77227 1.14390 0.94522 1.34772 1.48186 1.02598 1.07713 1.53509 1.22539 1.06498 0.70377 1.05628 1.23652 0.92950 0.90156 0.92941 1.19800 0.90926 0.94253 1.29638 1.17574 0.82669 0.87330 0.75122 1.90803 1.83038 1.21040 1.52401 1.45520 1.04165 1.10262 1.75243 1.21434 0.87462 0.89952 0.97451 0.93967 1.20794 0.90818 0.91111 0.92094 1.44256 1.08624 1.14822 1.65722 1.19527 1.22128 0.87707 1.09926 0.91470 1.25745 1.02085 1.00365 0.96361 1.70172 1.34923 1.30480 1.21985 0.85351 0.77158 0.81057 0.77863 1.18597 1.22938 1.20987 1.21175 0.87540 0.97522 0.92634 1.21979 0.98911 0.97832 0.96878 1.21267 0.92772 0.98328 0.97848 0.89627 1.21772 1.02575 1.00782 0.94042 0.91473 0.92158 0.86648 0.88745 0.88493 0.84739 0.73961 0.75174 0.94361 0.97958 0.94562 0.95766 0.92812 0.88363 0.93540 0.94415 0.90197 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.70 113.37 1.21 1.94 16 2 O -0.30 -11.62 9.98 -86.74 -0.87 -12.48 16 3 C 0.29 10.05 7.85 85.70 0.67 10.73 16 4 N -0.37 -10.24 11.90 -170.00 -2.02 -12.27 16 5 N -0.34 -6.15 3.97 -367.79 -1.46 -7.61 16 6 C 0.09 0.49 11.44 127.77 1.46 1.95 16 7 C 0.16 2.92 10.98 84.31 0.93 3.84 16 8 C -0.33 -10.70 6.14 -20.08 -0.12 -10.82 16 9 C 0.58 23.77 7.78 86.61 0.67 24.45 16 10 O -0.59 -31.91 16.09 1.03 0.02 -31.89 16 11 N -0.70 -23.35 4.36 -445.60 -1.94 -25.30 16 12 C 0.14 5.80 2.06 45.07 0.09 5.89 16 13 H 0.04 2.06 7.58 -2.39 -0.02 2.04 16 14 C 0.18 9.33 4.89 86.37 0.42 9.75 16 15 N -0.61 -32.52 2.99 -699.11 -2.09 -34.62 16 16 C -0.26 -15.61 9.59 84.04 0.81 -14.80 16 17 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 18 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 19 N -0.93 -59.98 11.19 21.65 0.24 -59.73 16 20 Si 0.96 49.64 29.59 68.60 2.03 51.67 16 21 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.30 -16.23 7.11 99.48 0.71 -15.53 16 23 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 24 C 0.14 5.60 6.51 86.36 0.56 6.17 16 25 C -0.12 -3.70 5.36 30.67 0.16 -3.54 16 26 C -0.08 -2.44 2.27 -10.76 -0.02 -2.47 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 C -0.13 -2.94 9.02 71.98 0.65 -2.29 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.13 -0.29 8.14 -2.38 -0.02 -0.31 16 35 H 0.24 1.46 7.46 -2.91 -0.02 1.44 16 36 H 0.41 9.17 7.21 -92.71 -0.67 8.50 16 37 H 0.04 2.44 6.04 -2.39 -0.01 2.42 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.05 2.18 7.94 -2.39 -0.02 2.16 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.24 7.35 -2.39 -0.02 1.22 16 Total: -1.00 -95.53 376.51 2.13 -93.40 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.32 Total: 10.68 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 7.91 Total: 28.15 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -7.28 Total: -139.53 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.85 Total: -44.37 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.03 Total: 51.67 kcal Total: -95.53 2.13 -93.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967708908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.922 kcal (2) G-P(sol) polarization free energy of solvation -95.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds