Wall clock time and date at job start Tue Mar 31 2020 14:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35849 * 117.00463 * 2 1 4 4 N 1.30807 * 126.05605 * 0.18821 * 3 2 1 5 5 N 1.39917 * 108.88076 * 180.24760 * 4 3 2 6 6 C 1.46504 * 125.69085 * 179.73639 * 5 4 3 7 7 C 1.34166 * 108.62330 * 359.73726 * 5 4 3 8 8 C 1.38138 * 107.50604 * 0.02562 * 7 5 4 9 9 C 1.47250 * 126.44627 * 179.97438 * 8 7 5 10 10 O 1.21620 * 119.99933 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00009 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00030 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.49713 * 324.93332 * 12 11 9 14 14 C 1.53198 * 109.49776 * 84.99853 * 12 11 9 15 15 N 1.46929 * 108.77217 * 65.31935 * 14 12 11 16 16 C 1.36940 * 120.62711 * 233.58299 * 15 14 12 17 17 H 1.07996 * 119.99937 * 151.84725 * 16 15 14 18 18 C 1.38820 * 120.00078 * 331.85216 * 16 15 14 19 19 N 1.31621 * 119.99703 * 343.06427 * 18 16 15 20 20 Si 1.86796 * 119.99894 * 163.06628 * 18 16 15 21 21 H 1.48500 * 109.46850 * 89.99990 * 20 18 16 22 22 H 1.48499 * 109.47264 * 209.99641 * 20 18 16 23 23 H 1.48498 * 109.47465 * 329.99803 * 20 18 16 24 24 C 1.46918 * 118.74006 * 53.60714 * 15 14 12 25 25 C 1.53191 * 108.77772 * 306.38916 * 24 15 14 26 26 C 1.53038 * 109.49594 * 204.83885 * 12 11 9 27 27 H 1.09002 * 109.45825 * 181.39664 * 26 12 11 28 28 C 1.52997 * 109.46482 * 61.43116 * 26 12 11 29 29 H 1.09004 * 109.47112 * 300.00327 * 1 2 3 30 30 H 1.08997 * 109.46906 * 60.00429 * 1 2 3 31 31 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46961 * 270.00023 * 6 5 4 33 33 H 1.08994 * 109.47126 * 30.00206 * 6 5 4 34 34 H 1.08999 * 109.47163 * 150.00214 * 6 5 4 35 35 H 1.07998 * 126.24982 * 180.02562 * 7 5 4 36 36 H 0.97006 * 120.00059 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.58572 * 305.53303 * 14 12 11 38 38 H 1.08999 * 109.58321 * 185.10453 * 14 12 11 39 39 H 0.96995 * 119.99773 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.58318 * 186.60142 * 24 15 14 41 41 H 1.09006 * 109.70478 * 66.25039 * 24 15 14 42 42 H 1.08997 * 109.49503 * 174.59170 * 25 24 15 43 43 H 1.09002 * 109.49751 * 294.68313 * 25 24 15 44 44 H 1.08999 * 109.47194 * 299.93611 * 28 26 12 45 45 H 1.09009 * 109.46741 * 59.93038 * 28 26 12 46 46 H 1.08998 * 109.47359 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4532 2.3765 0.0035 5 7 2.4283 3.3799 -0.0036 6 6 2.1706 4.8221 -0.0080 7 6 3.6387 2.8011 -0.0057 8 6 3.4453 1.4334 -0.0006 9 6 4.4956 0.4014 -0.0012 10 8 4.1912 -0.7761 0.0032 11 7 5.7943 0.7616 -0.0067 12 6 6.8393 -0.2652 -0.0079 13 1 6.5115 -1.1185 0.5856 14 6 7.1107 -0.7169 -1.4464 15 7 7.6735 0.4129 -2.1986 16 6 7.1062 0.8181 -3.3773 17 1 7.1901 1.8481 -3.6909 18 6 6.4233 -0.0951 -4.1689 19 7 6.5932 -1.3865 -3.9797 20 14 5.2633 0.5088 -5.5027 21 1 6.0135 0.6735 -6.7737 22 1 4.1732 -0.4808 -5.6960 23 1 4.6812 1.8139 -5.0988 24 6 8.8566 1.0993 -1.6623 25 6 8.5657 1.5306 -0.2214 26 6 8.1233 0.3122 0.5921 27 1 8.9075 -0.4445 0.5682 28 6 7.8651 0.7328 2.0403 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.1031 5.1760 -1.0367 33 1 1.2325 5.0251 0.5084 34 1 2.9846 5.3382 0.5011 35 1 4.5905 3.3114 -0.0105 36 1 6.0371 1.7008 -0.0099 37 1 6.1780 -1.0368 -1.9110 38 1 7.8215 -1.5432 -1.4419 39 1 6.1158 -2.0246 -4.5326 40 1 9.0760 1.9776 -2.2695 41 1 9.7114 0.4230 -1.6758 42 1 9.4671 1.9553 0.2202 43 1 7.7719 2.2777 -0.2186 44 1 7.0813 1.4899 2.0645 45 1 7.5500 -0.1350 2.6199 46 1 8.7796 1.1436 2.4680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967708909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:33 Heat of formation + Delta-G solvation = 34.137482 kcal Electronic energy + Delta-G solvation = -29069.334136 eV Core-core repulsion = 25190.305517 eV Total energy + Delta-G solvation = -3879.028619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34327 -39.17226 -38.12529 -37.15864 -34.01893 -32.87513 -32.62649 -30.98869 -30.44196 -28.80465 -27.84584 -27.23747 -26.10033 -24.02082 -22.84516 -21.91517 -21.01438 -20.84165 -20.04503 -18.54722 -17.84547 -16.83971 -16.51739 -16.17995 -15.60373 -15.08883 -14.95339 -14.82306 -14.69470 -14.02400 -13.87646 -13.68929 -13.55954 -13.22936 -12.97952 -12.86854 -12.71811 -12.53384 -12.45823 -11.89351 -11.83918 -11.51754 -11.28958 -11.14004 -11.01344 -10.85254 -10.73378 -10.65469 -10.44307 -10.16940 -9.85187 -9.60630 -9.41120 -9.12844 -9.04071 -8.38901 -8.37196 -8.09021 -6.55576 -5.68796 -3.11737 1.61949 2.21935 2.49204 3.34827 3.42551 3.49830 3.52065 3.95767 4.16392 4.38732 4.57049 4.69581 4.94849 5.07702 5.19625 5.26870 5.29328 5.30764 5.31015 5.42132 5.50630 5.53502 5.56383 5.63314 5.79708 5.88789 5.94636 6.00036 6.08817 6.20574 6.38297 6.44854 6.51310 6.64209 6.76483 6.79481 6.82153 6.96131 7.13586 7.31897 7.53366 7.70360 7.78776 7.89964 8.35074 8.55652 9.09898 9.29924 9.94512 10.50174 11.39031 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009710 B = 0.005686 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.910493 B = 4923.287138 C = 6045.948876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.264 6.264 3 C 0.314 3.686 4 N -0.358 5.358 5 N -0.354 5.354 6 C 0.103 3.897 7 C 0.120 3.880 8 C -0.276 4.276 9 C 0.591 3.409 10 O -0.537 6.537 11 N -0.699 5.699 12 C 0.129 3.871 13 H 0.076 0.924 14 C 0.160 3.840 15 N -0.586 5.586 16 C -0.253 4.253 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.143 3.857 25 C -0.127 4.127 26 C -0.094 4.094 27 H 0.076 0.924 28 C -0.143 4.143 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.187 0.813 36 H 0.389 0.611 37 H 0.097 0.903 38 H 0.023 0.977 39 H 0.254 0.746 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 11.928 12.325 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.166 6.166 3 C 0.109 3.891 4 N -0.198 5.198 5 N -0.136 5.136 6 C -0.038 4.038 7 C -0.031 4.031 8 C -0.291 4.291 9 C 0.377 3.623 10 O -0.415 6.415 11 N -0.349 5.349 12 C 0.023 3.977 13 H 0.094 0.906 14 C 0.033 3.967 15 N -0.309 5.309 16 C -0.383 4.383 17 H 0.079 0.921 18 C -0.191 4.191 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.016 3.984 25 C -0.167 4.167 26 C -0.113 4.113 27 H 0.095 0.905 28 C -0.201 4.201 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.204 0.796 36 H 0.223 0.777 37 H 0.116 0.884 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.548 11.302 12.221 17.888 hybrid contribution 0.003 0.543 -0.903 1.054 sum -6.545 11.846 11.318 17.643 Atomic orbital electron populations 1.22995 0.78234 1.03592 1.01663 1.86547 1.21338 1.20467 1.88242 1.20413 0.90271 0.85095 0.93316 1.77227 1.13243 0.94637 1.34715 1.47575 1.03201 1.06261 1.56575 1.21941 1.04158 0.73890 1.03842 1.23016 0.90995 0.92298 0.96833 1.19891 0.92026 0.92748 1.24483 1.16928 0.81629 0.87296 0.76403 1.90778 1.82215 1.17970 1.50518 1.45589 1.04769 1.09659 1.74903 1.21727 0.85455 0.90101 1.00396 0.90649 1.21212 1.00096 0.88517 0.86830 1.43958 1.28156 1.36227 1.22542 1.19009 1.29892 0.92640 0.96729 0.92079 1.24986 1.01337 0.95158 0.97574 1.69987 1.42903 1.00041 1.41013 0.86418 0.81150 0.77930 0.81950 1.21550 1.21566 1.20766 1.20914 0.90135 0.95848 0.91502 1.22071 0.99639 0.96758 0.98220 1.21312 0.97566 0.98520 0.93916 0.90531 1.21839 1.00695 1.01064 0.96455 0.92742 0.92630 0.88173 0.90335 0.89137 0.89011 0.79584 0.77709 0.88448 0.95868 0.93614 0.92982 0.96551 0.92930 0.92876 0.93087 0.93089 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 101.05 1.08 1.49 16 2 O -0.26 -4.94 9.98 -24.62 -0.25 -5.18 16 3 C 0.31 5.77 7.85 -16.66 -0.13 5.64 16 4 N -0.36 -5.70 11.90 30.79 0.37 -5.33 16 5 N -0.35 -4.47 3.97 -67.60 -0.27 -4.74 16 6 C 0.10 0.71 11.44 59.85 0.68 1.40 16 7 C 0.12 1.60 10.98 -16.57 -0.18 1.42 16 8 C -0.28 -4.99 6.14 -104.95 -0.64 -5.64 16 9 C 0.59 12.32 7.77 -12.60 -0.10 12.22 16 10 O -0.54 -13.42 16.09 -0.09 0.00 -13.42 16 11 N -0.70 -12.81 4.24 -54.82 -0.23 -13.04 16 12 C 0.13 2.51 2.24 -67.81 -0.15 2.36 16 13 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 14 C 0.16 3.91 4.90 -3.71 -0.02 3.89 16 15 N -0.59 -14.21 2.91 -172.31 -0.50 -14.71 16 16 C -0.25 -6.87 9.58 -15.05 -0.14 -7.02 16 17 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 18 C 0.01 0.25 4.92 -17.43 -0.09 0.17 16 19 N -0.90 -27.06 11.20 55.49 0.62 -26.44 16 20 Si 0.90 22.71 29.59 -169.99 -5.03 17.68 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.14 2.81 6.52 -3.72 -0.02 2.78 16 25 C -0.13 -1.96 5.20 -26.61 -0.14 -2.10 16 26 C -0.09 -1.47 2.48 -90.58 -0.22 -1.69 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 28 C -0.14 -1.83 9.05 37.16 0.34 -1.49 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.19 1.72 7.46 -52.49 -0.39 1.33 16 36 H 0.39 6.11 5.55 -40.82 -0.23 5.88 16 37 H 0.10 2.84 6.06 -51.93 -0.31 2.53 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 44 H 0.05 0.63 7.54 -51.93 -0.39 0.23 16 45 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -36.85 373.39 -6.49 -43.34 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.08 Total: 2.78 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 0.26 Total: 13.43 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.02 Total: -64.26 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.25 Total: -18.60 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.85 -6.49 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967708909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.480 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds