Wall clock time and date at job start Tue Mar 31 2020 14:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35849 * 117.00463 * 2 1 4 4 N 1.30807 * 126.05605 * 0.18821 * 3 2 1 5 5 N 1.39917 * 108.88076 * 180.24760 * 4 3 2 6 6 C 1.46504 * 125.69085 * 179.73639 * 5 4 3 7 7 C 1.34166 * 108.62330 * 359.73726 * 5 4 3 8 8 C 1.38138 * 107.50604 * 0.02562 * 7 5 4 9 9 C 1.47250 * 126.44627 * 179.97438 * 8 7 5 10 10 O 1.21620 * 119.99933 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00009 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00030 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.49713 * 324.93332 * 12 11 9 14 14 C 1.53198 * 109.49776 * 84.99853 * 12 11 9 15 15 N 1.46929 * 108.77217 * 65.31935 * 14 12 11 16 16 C 1.36940 * 120.62711 * 233.58299 * 15 14 12 17 17 H 1.07996 * 119.99937 * 151.84725 * 16 15 14 18 18 C 1.38820 * 120.00078 * 331.85216 * 16 15 14 19 19 N 1.31621 * 119.99703 * 343.06427 * 18 16 15 20 20 Si 1.86796 * 119.99894 * 163.06628 * 18 16 15 21 21 H 1.48500 * 109.46850 * 89.99990 * 20 18 16 22 22 H 1.48499 * 109.47264 * 209.99641 * 20 18 16 23 23 H 1.48498 * 109.47465 * 329.99803 * 20 18 16 24 24 C 1.46918 * 118.74006 * 53.60714 * 15 14 12 25 25 C 1.53191 * 108.77772 * 306.38916 * 24 15 14 26 26 C 1.53038 * 109.49594 * 204.83885 * 12 11 9 27 27 H 1.09002 * 109.45825 * 181.39664 * 26 12 11 28 28 C 1.52997 * 109.46482 * 61.43116 * 26 12 11 29 29 H 1.09004 * 109.47112 * 300.00327 * 1 2 3 30 30 H 1.08997 * 109.46906 * 60.00429 * 1 2 3 31 31 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46961 * 270.00023 * 6 5 4 33 33 H 1.08994 * 109.47126 * 30.00206 * 6 5 4 34 34 H 1.08999 * 109.47163 * 150.00214 * 6 5 4 35 35 H 1.07998 * 126.24982 * 180.02562 * 7 5 4 36 36 H 0.97006 * 120.00059 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.58572 * 305.53303 * 14 12 11 38 38 H 1.08999 * 109.58321 * 185.10453 * 14 12 11 39 39 H 0.96995 * 119.99773 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.58318 * 186.60142 * 24 15 14 41 41 H 1.09006 * 109.70478 * 66.25039 * 24 15 14 42 42 H 1.08997 * 109.49503 * 174.59170 * 25 24 15 43 43 H 1.09002 * 109.49751 * 294.68313 * 25 24 15 44 44 H 1.08999 * 109.47194 * 299.93611 * 28 26 12 45 45 H 1.09009 * 109.46741 * 59.93038 * 28 26 12 46 46 H 1.08998 * 109.47359 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4532 2.3765 0.0035 5 7 2.4283 3.3799 -0.0036 6 6 2.1706 4.8221 -0.0080 7 6 3.6387 2.8011 -0.0057 8 6 3.4453 1.4334 -0.0006 9 6 4.4956 0.4014 -0.0012 10 8 4.1912 -0.7761 0.0032 11 7 5.7943 0.7616 -0.0067 12 6 6.8393 -0.2652 -0.0079 13 1 6.5115 -1.1185 0.5856 14 6 7.1107 -0.7169 -1.4464 15 7 7.6735 0.4129 -2.1986 16 6 7.1062 0.8181 -3.3773 17 1 7.1901 1.8481 -3.6909 18 6 6.4233 -0.0951 -4.1689 19 7 6.5932 -1.3865 -3.9797 20 14 5.2633 0.5088 -5.5027 21 1 6.0135 0.6735 -6.7737 22 1 4.1732 -0.4808 -5.6960 23 1 4.6812 1.8139 -5.0988 24 6 8.8566 1.0993 -1.6623 25 6 8.5657 1.5306 -0.2214 26 6 8.1233 0.3122 0.5921 27 1 8.9075 -0.4445 0.5682 28 6 7.8651 0.7328 2.0403 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.1031 5.1760 -1.0367 33 1 1.2325 5.0251 0.5084 34 1 2.9846 5.3382 0.5011 35 1 4.5905 3.3114 -0.0105 36 1 6.0371 1.7008 -0.0099 37 1 6.1780 -1.0368 -1.9110 38 1 7.8215 -1.5432 -1.4419 39 1 6.1158 -2.0246 -4.5326 40 1 9.0760 1.9776 -2.2695 41 1 9.7114 0.4230 -1.6758 42 1 9.4671 1.9553 0.2202 43 1 7.7719 2.2777 -0.2186 44 1 7.0813 1.4899 2.0645 45 1 7.5500 -0.1350 2.6199 46 1 8.7796 1.1436 2.4680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967708909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:32 Heat of formation + Delta-G solvation = 5.356095 kcal Electronic energy + Delta-G solvation = -29070.582191 eV Core-core repulsion = 25190.305517 eV Total energy + Delta-G solvation = -3880.276674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49969 -40.72321 -39.33740 -38.77446 -35.84410 -34.26051 -33.78744 -32.79494 -31.78610 -30.30658 -28.85158 -28.82300 -27.11823 -25.78463 -24.27071 -23.34238 -22.65647 -21.96438 -21.36956 -20.19593 -19.09209 -18.55823 -17.96559 -17.33336 -16.87927 -16.79858 -16.31817 -16.01630 -15.91064 -15.68571 -15.52671 -15.22388 -14.85178 -14.72138 -14.47734 -14.05071 -13.95246 -13.56174 -13.47448 -13.43451 -13.07177 -12.95390 -12.87003 -12.69417 -12.55420 -12.41814 -12.23312 -12.16142 -11.94058 -11.90004 -11.48261 -11.22668 -10.99071 -10.78042 -10.48894 -10.21503 -9.86947 -9.43758 -8.58761 -7.82369 -5.26569 0.52435 1.14710 1.29439 1.37991 1.43037 1.48887 2.23013 2.49998 2.51890 2.68660 3.34430 3.42567 3.74813 3.79280 3.96383 4.07641 4.21077 4.22990 4.29092 4.32706 4.39159 4.50425 4.53112 4.60455 4.63096 4.71812 4.74990 4.77603 4.80466 4.93774 5.00862 5.03533 5.18073 5.24598 5.32758 5.35016 5.55141 5.60192 5.65772 5.79226 5.84523 5.90065 6.16438 6.43615 6.51272 6.90219 7.18683 7.59140 7.93366 8.44135 9.22508 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009710 B = 0.005686 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.910493 B = 4923.287138 C = 6045.948876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.289 3.711 4 N -0.367 5.367 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.153 3.847 8 C -0.329 4.329 9 C 0.586 3.414 10 O -0.596 6.596 11 N -0.683 5.683 12 C 0.140 3.860 13 H 0.056 0.944 14 C 0.171 3.829 15 N -0.598 5.598 16 C -0.241 4.241 17 H 0.075 0.925 18 C -0.054 4.054 19 N -0.936 5.936 20 Si 0.950 3.050 21 H -0.279 1.279 22 H -0.310 1.310 23 H -0.267 1.267 24 C 0.135 3.865 25 C -0.114 4.114 26 C -0.087 4.087 27 H 0.072 0.928 28 C -0.134 4.134 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.235 0.765 36 H 0.405 0.595 37 H 0.043 0.957 38 H -0.007 1.007 39 H 0.242 0.758 40 H 0.061 0.939 41 H 0.009 0.991 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 16.786 13.950 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.084 3.916 4 N -0.208 5.208 5 N -0.121 5.121 6 C -0.050 4.050 7 C -0.002 4.002 8 C -0.344 4.344 9 C 0.374 3.626 10 O -0.478 6.478 11 N -0.334 5.334 12 C 0.033 3.967 13 H 0.074 0.926 14 C 0.044 3.956 15 N -0.321 5.321 16 C -0.372 4.372 17 H 0.093 0.907 18 C -0.249 4.249 19 N -0.583 5.583 20 Si 0.779 3.221 21 H -0.206 1.206 22 H -0.238 1.238 23 H -0.191 1.191 24 C 0.010 3.990 25 C -0.153 4.153 26 C -0.106 4.106 27 H 0.091 0.909 28 C -0.191 4.191 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.251 0.749 36 H 0.242 0.758 37 H 0.062 0.938 38 H 0.011 0.989 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.647 16.274 13.868 22.115 hybrid contribution -0.262 -0.860 -1.406 1.669 sum -5.910 15.414 12.462 20.684 Atomic orbital electron populations 1.23221 0.76070 1.05089 1.02313 1.86473 1.23826 1.21801 1.88446 1.20722 0.90834 0.85494 0.94500 1.77181 1.14333 0.94539 1.34764 1.48151 1.02497 1.07691 1.53773 1.22522 1.06538 0.70489 1.05465 1.23551 0.92753 0.90537 0.93343 1.19871 0.91257 0.94294 1.28962 1.17453 0.82703 0.87238 0.75184 1.90735 1.83147 1.20638 1.53283 1.45370 1.03807 1.10125 1.74068 1.21403 0.87937 0.90598 0.96725 0.92602 1.20855 0.96701 0.88329 0.89713 1.44160 1.29888 1.36074 1.22013 1.19430 1.28155 0.92876 0.96732 0.90724 1.25705 1.03641 0.95305 1.00224 1.70170 1.44450 1.01182 1.42453 0.85531 0.78967 0.77343 0.80242 1.20600 1.23808 1.19141 1.21170 0.87962 0.95387 0.94475 1.21957 1.02033 0.96566 0.94701 1.21267 0.94727 0.98652 0.95950 0.90933 1.21754 1.02483 1.01213 0.93683 0.91412 0.92495 0.86373 0.89098 0.88189 0.84836 0.74869 0.75773 0.93805 0.98945 0.94897 0.92088 0.97262 0.88890 0.91261 0.92058 0.93717 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.70 113.37 1.21 1.96 16 2 O -0.30 -11.92 9.98 -86.73 -0.87 -12.78 16 3 C 0.29 10.78 7.85 85.70 0.67 11.45 16 4 N -0.37 -11.25 11.90 -170.00 -2.02 -13.27 16 5 N -0.34 -7.43 3.97 -367.78 -1.46 -8.89 16 6 C 0.09 0.79 11.44 127.77 1.46 2.26 16 7 C 0.15 3.55 10.98 84.31 0.93 4.47 16 8 C -0.33 -11.77 6.14 -20.08 -0.12 -11.90 16 9 C 0.59 25.06 7.77 86.61 0.67 25.74 16 10 O -0.60 -31.91 16.09 1.02 0.02 -31.90 16 11 N -0.68 -24.57 4.24 -445.60 -1.89 -26.46 16 12 C 0.14 5.52 2.24 45.07 0.10 5.62 16 13 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 14 C 0.17 8.77 4.90 86.36 0.42 9.19 16 15 N -0.60 -29.00 2.91 -699.08 -2.03 -31.03 16 16 C -0.24 -13.07 9.58 84.03 0.81 -12.26 16 17 H 0.08 3.80 7.88 -2.91 -0.02 3.78 16 18 C -0.05 -3.15 4.92 84.86 0.42 -2.73 16 19 N -0.94 -59.75 11.20 21.65 0.24 -59.51 16 20 Si 0.95 47.72 29.59 68.60 2.03 49.74 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.31 -16.52 7.11 99.48 0.71 -15.81 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.13 5.01 6.52 86.36 0.56 5.57 16 25 C -0.11 -2.99 5.20 30.67 0.16 -2.83 16 26 C -0.09 -2.50 2.48 -10.77 -0.03 -2.53 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 C -0.13 -2.90 9.05 71.98 0.65 -2.24 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.24 2.90 7.46 -2.91 -0.02 2.88 16 36 H 0.40 11.44 5.55 -92.70 -0.51 10.93 16 37 H 0.04 2.73 6.06 -2.39 -0.01 2.72 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.06 2.15 7.93 -2.38 -0.02 2.13 16 41 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.64 6.40 -2.39 -0.02 1.62 16 44 H 0.06 1.22 7.54 -2.39 -0.02 1.20 16 45 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -89.49 373.39 2.40 -87.09 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.47 Total: 15.25 kcal Atomic # 6 Polarization: 23.85 SS G_CDS: 7.92 Total: 31.77 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -7.17 Total: -139.17 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.85 Total: -44.68 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.74 kcal Total: -89.49 2.40 -87.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967708909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.451 kcal (2) G-P(sol) polarization free energy of solvation -89.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds