Wall clock time and date at job start Tue Mar 31 2020 14:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35850 * 117.00202 * 2 1 4 4 N 1.30812 * 126.05652 * 359.97438 * 3 2 1 5 5 N 1.39925 * 108.88257 * 179.97438 * 4 3 2 6 6 C 1.46493 * 125.68997 * 180.02562 * 5 4 3 7 7 C 1.34167 * 108.61798 * 359.75378 * 5 4 3 8 8 C 1.38128 * 107.50848 * 0.39255 * 7 5 4 9 9 C 1.47249 * 126.44456 * 179.87123 * 8 7 5 10 10 O 1.21619 * 120.00219 * 179.68807 * 9 8 7 11 11 N 1.34784 * 120.00181 * 359.68995 * 9 8 7 12 12 C 1.46496 * 120.00104 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49845 * 35.05869 * 12 11 9 14 14 C 1.53195 * 109.49722 * 275.00011 * 12 11 9 15 15 N 1.46917 * 108.77828 * 185.41517 * 14 12 11 16 16 C 1.36935 * 120.63313 * 233.58525 * 15 14 12 17 17 H 1.08003 * 120.00334 * 151.84309 * 16 15 14 18 18 C 1.38816 * 120.00109 * 331.84348 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07479 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07501 * 18 16 15 21 21 H 1.48500 * 109.47341 * 59.99642 * 20 18 16 22 22 H 1.48504 * 109.47235 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46651 * 299.99824 * 20 18 16 24 24 C 1.46934 * 118.73910 * 53.60508 * 15 14 12 25 25 C 1.53194 * 108.89214 * 306.32295 * 24 15 14 26 26 C 1.53042 * 109.49765 * 155.16276 * 12 11 9 27 27 H 1.08991 * 109.45872 * 61.30992 * 26 12 11 28 28 C 1.52999 * 109.45796 * 301.33122 * 26 12 11 29 29 H 1.08999 * 109.47301 * 300.00260 * 1 2 3 30 30 H 1.08998 * 109.46524 * 60.00313 * 1 2 3 31 31 H 1.08998 * 109.46814 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47005 * 89.97761 * 6 5 4 33 33 H 1.09002 * 109.47166 * 209.97636 * 6 5 4 34 34 H 1.09002 * 109.47047 * 329.97635 * 6 5 4 35 35 H 1.08004 * 126.24159 * 180.26512 * 7 5 4 36 36 H 0.97001 * 119.99354 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.58933 * 65.62279 * 14 12 11 38 38 H 1.09007 * 109.58443 * 305.19958 * 14 12 11 39 39 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.58460 * 66.18260 * 24 15 14 41 41 H 1.09001 * 109.58650 * 186.46265 * 24 15 14 42 42 H 1.08996 * 109.49250 * 174.65763 * 25 24 15 43 43 H 1.09002 * 109.49602 * 294.75299 * 25 24 15 44 44 H 1.09000 * 109.46817 * 59.99939 * 28 26 12 45 45 H 1.08991 * 109.47274 * 179.97438 * 28 26 12 46 46 H 1.08995 * 109.47589 * 300.00425 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3801 0.0003 6 6 2.1704 4.8222 0.0006 7 6 3.6386 2.8013 0.0067 8 6 3.4452 1.4336 0.0011 9 6 4.4956 0.4017 0.0023 10 8 4.1912 -0.7758 0.0025 11 7 5.7943 0.7620 0.0032 12 6 6.8393 -0.2647 0.0039 13 1 6.5098 -1.1196 -0.5866 14 6 7.1148 -0.7129 1.4426 15 7 8.2512 -1.6441 1.4385 16 6 8.1429 -2.8798 2.0186 17 1 8.7411 -3.7018 1.6540 18 6 7.2642 -3.0759 3.0751 19 7 6.7890 -2.0418 3.7364 20 14 6.7562 -4.8073 3.5584 21 1 7.9598 -5.5871 3.9434 22 1 5.8175 -4.7452 4.7075 23 1 6.0867 -5.4659 2.4081 24 6 9.5064 -1.2241 0.8005 25 6 9.2074 -0.7713 -0.6321 26 6 8.1217 0.3112 -0.6012 27 1 8.4637 1.1505 0.0043 28 6 7.8417 0.7916 -2.0266 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1056 5.1794 1.0284 33 1 2.9831 5.3367 -0.5123 34 1 1.2308 5.0234 -0.5140 35 1 4.5904 3.3117 0.0129 36 1 6.0370 1.7011 0.0027 37 1 6.2338 -1.2133 1.8446 38 1 7.3561 0.1553 2.0560 39 1 6.1753 -2.1789 4.4750 40 1 9.9427 -0.3976 1.3615 41 1 10.2044 -2.0612 0.7810 42 1 10.1144 -0.3688 -1.0831 43 1 8.8562 -1.6216 -1.2166 44 1 7.0715 1.5626 -2.0054 45 1 8.7546 1.2022 -2.4575 46 1 7.4990 -0.0475 -2.6321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967708910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:36 Heat of formation + Delta-G solvation = 32.657975 kcal Electronic energy + Delta-G solvation = -28325.448821 eV Core-core repulsion = 24446.356046 eV Total energy + Delta-G solvation = -3879.092775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48495 -39.10155 -38.23039 -37.25559 -34.18612 -33.04013 -32.91018 -30.94724 -30.55245 -28.56449 -27.93999 -27.25766 -26.19306 -23.99956 -23.05855 -21.75030 -21.05616 -20.78369 -19.76447 -19.32966 -17.84405 -16.80171 -16.68144 -16.29676 -15.70093 -15.32275 -15.06224 -14.93824 -14.71495 -14.02611 -13.86962 -13.64674 -13.46247 -13.33511 -13.11651 -12.96116 -12.78621 -12.63037 -12.30214 -11.97343 -11.89294 -11.56239 -11.50791 -11.24123 -10.86453 -10.81191 -10.61032 -10.51526 -10.36757 -10.09542 -9.86544 -9.80269 -9.39813 -9.20384 -9.18142 -8.52691 -8.32471 -8.26738 -6.55236 -5.65897 -3.09401 1.45821 2.08578 2.35562 3.23743 3.49746 3.56483 3.59291 3.78232 3.95536 4.25380 4.52733 4.63258 4.82272 4.94977 5.07976 5.19340 5.23751 5.25893 5.32957 5.37502 5.48120 5.49211 5.55112 5.65396 5.73197 5.76111 5.99696 6.08119 6.10917 6.20669 6.33767 6.48556 6.53518 6.64348 6.65839 6.82264 6.86019 7.04700 7.13822 7.19832 7.42474 7.58804 7.84832 7.93859 8.16362 8.58646 8.93933 9.33153 9.97164 10.51987 11.42019 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.004281 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.179529 B = 6539.644903 C = 8126.599396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.264 6.264 3 C 0.315 3.685 4 N -0.356 5.356 5 N -0.353 5.353 6 C 0.102 3.898 7 C 0.117 3.883 8 C -0.279 4.279 9 C 0.587 3.413 10 O -0.522 6.522 11 N -0.719 5.719 12 C 0.128 3.872 13 H 0.082 0.918 14 C 0.167 3.833 15 N -0.588 5.588 16 C -0.258 4.258 17 H 0.065 0.935 18 C 0.008 3.992 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.143 3.857 25 C -0.125 4.125 26 C -0.092 4.092 27 H 0.065 0.935 28 C -0.143 4.143 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.188 0.812 36 H 0.386 0.614 37 H 0.095 0.905 38 H 0.015 0.985 39 H 0.254 0.746 40 H 0.017 0.983 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 16.762 -10.448 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.165 6.165 3 C 0.110 3.890 4 N -0.197 5.197 5 N -0.135 5.135 6 C -0.039 4.039 7 C -0.035 4.035 8 C -0.294 4.294 9 C 0.373 3.627 10 O -0.397 6.397 11 N -0.370 5.370 12 C 0.022 3.978 13 H 0.100 0.900 14 C 0.040 3.960 15 N -0.311 5.311 16 C -0.387 4.387 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.542 5.542 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.016 3.984 25 C -0.165 4.165 26 C -0.111 4.111 27 H 0.084 0.916 28 C -0.200 4.200 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.205 0.795 36 H 0.218 0.782 37 H 0.113 0.887 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.200 16.242 -10.284 20.900 hybrid contribution 0.271 -0.461 0.387 0.660 sum -7.929 15.780 -9.898 20.245 Atomic orbital electron populations 1.23014 0.78038 1.03755 1.01690 1.86566 1.21504 1.20349 1.88105 1.20439 0.90260 0.85155 0.93116 1.77276 1.13136 0.94617 1.34651 1.47613 1.03215 1.06338 1.56372 1.21958 1.04313 0.73786 1.03835 1.23019 0.91083 0.92206 0.97169 1.19909 0.92074 0.92689 1.24769 1.17008 0.81542 0.87457 0.76702 1.90850 1.81949 1.17874 1.49051 1.45838 1.05446 1.09526 1.76181 1.21926 0.84723 0.89688 1.01442 0.90004 1.21105 0.93117 0.92515 0.89273 1.43950 1.06435 1.15471 1.65237 1.19089 1.23391 0.86144 1.10096 0.91749 1.25020 1.01326 0.97053 0.95689 1.70000 1.34404 1.28708 1.21120 0.86389 0.78187 0.84563 0.77741 1.20990 1.21670 1.20827 1.20946 0.89660 0.97261 0.90521 1.22123 0.96690 0.97744 0.99955 1.21353 0.95837 0.98392 0.95502 0.91617 1.21839 1.00434 1.00804 0.96973 0.92562 0.92682 0.88058 0.90305 0.88966 0.89046 0.79471 0.78161 0.88679 0.96653 0.93652 0.96556 0.92741 0.92709 0.92117 0.93283 0.93303 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 101.05 1.08 1.46 16 2 O -0.26 -4.67 9.98 -24.62 -0.25 -4.92 16 3 C 0.32 5.33 7.85 -16.66 -0.13 5.20 16 4 N -0.36 -5.10 11.90 30.79 0.37 -4.74 16 5 N -0.35 -3.78 3.97 -67.60 -0.27 -4.04 16 6 C 0.10 0.52 11.44 59.84 0.68 1.21 16 7 C 0.12 1.28 10.98 -16.57 -0.18 1.10 16 8 C -0.28 -4.51 6.14 -104.95 -0.64 -5.16 16 9 C 0.59 11.48 7.77 -12.60 -0.10 11.38 16 10 O -0.52 -12.95 16.10 -0.09 0.00 -12.96 16 11 N -0.72 -12.13 4.36 -54.82 -0.24 -12.37 16 12 C 0.13 2.54 2.07 -67.81 -0.14 2.40 16 13 H 0.08 1.89 7.58 -51.93 -0.39 1.50 16 14 C 0.17 4.17 4.88 -3.71 -0.02 4.15 16 15 N -0.59 -15.27 2.99 -172.31 -0.52 -15.78 16 16 C -0.26 -7.42 9.58 -15.06 -0.14 -7.56 16 17 H 0.06 1.81 7.89 -52.48 -0.41 1.39 16 18 C 0.01 0.24 4.92 -17.43 -0.09 0.16 16 19 N -0.90 -27.54 11.20 55.49 0.62 -26.92 16 20 Si 0.90 23.19 29.59 -169.99 -5.03 18.16 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 23 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 24 C 0.14 3.00 6.50 -3.71 -0.02 2.98 16 25 C -0.13 -2.15 5.39 -26.45 -0.14 -2.29 16 26 C -0.09 -1.47 2.27 -90.42 -0.21 -1.68 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 C -0.14 -1.86 9.02 37.16 0.34 -1.53 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.19 1.16 7.46 -52.48 -0.39 0.77 16 36 H 0.39 4.88 7.22 -40.82 -0.29 4.59 16 37 H 0.10 2.84 6.06 -51.93 -0.31 2.52 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.57 7.35 -51.93 -0.38 0.18 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -38.57 376.56 -6.59 -45.15 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.23 Total: 0.92 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 0.29 Total: 11.82 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.04 Total: -63.86 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.25 Total: -17.87 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.03 Total: 18.16 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.57 -6.59 -45.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967708910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.810 kcal (2) G-P(sol) polarization free energy of solvation -38.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds