Wall clock time and date at job start Tue Mar 31 2020 14:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35850 * 117.00202 * 2 1 4 4 N 1.30812 * 126.05652 * 359.97438 * 3 2 1 5 5 N 1.39925 * 108.88257 * 179.97438 * 4 3 2 6 6 C 1.46493 * 125.68997 * 180.02562 * 5 4 3 7 7 C 1.34167 * 108.61798 * 359.75378 * 5 4 3 8 8 C 1.38128 * 107.50848 * 0.39255 * 7 5 4 9 9 C 1.47249 * 126.44456 * 179.87123 * 8 7 5 10 10 O 1.21619 * 120.00219 * 179.68807 * 9 8 7 11 11 N 1.34784 * 120.00181 * 359.68995 * 9 8 7 12 12 C 1.46496 * 120.00104 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49845 * 35.05869 * 12 11 9 14 14 C 1.53195 * 109.49722 * 275.00011 * 12 11 9 15 15 N 1.46917 * 108.77828 * 185.41517 * 14 12 11 16 16 C 1.36935 * 120.63313 * 233.58525 * 15 14 12 17 17 H 1.08003 * 120.00334 * 151.84309 * 16 15 14 18 18 C 1.38816 * 120.00109 * 331.84348 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07479 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07501 * 18 16 15 21 21 H 1.48500 * 109.47341 * 59.99642 * 20 18 16 22 22 H 1.48504 * 109.47235 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46651 * 299.99824 * 20 18 16 24 24 C 1.46934 * 118.73910 * 53.60508 * 15 14 12 25 25 C 1.53194 * 108.89214 * 306.32295 * 24 15 14 26 26 C 1.53042 * 109.49765 * 155.16276 * 12 11 9 27 27 H 1.08991 * 109.45872 * 61.30992 * 26 12 11 28 28 C 1.52999 * 109.45796 * 301.33122 * 26 12 11 29 29 H 1.08999 * 109.47301 * 300.00260 * 1 2 3 30 30 H 1.08998 * 109.46524 * 60.00313 * 1 2 3 31 31 H 1.08998 * 109.46814 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47005 * 89.97761 * 6 5 4 33 33 H 1.09002 * 109.47166 * 209.97636 * 6 5 4 34 34 H 1.09002 * 109.47047 * 329.97635 * 6 5 4 35 35 H 1.08004 * 126.24159 * 180.26512 * 7 5 4 36 36 H 0.97001 * 119.99354 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.58933 * 65.62279 * 14 12 11 38 38 H 1.09007 * 109.58443 * 305.19958 * 14 12 11 39 39 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.58460 * 66.18260 * 24 15 14 41 41 H 1.09001 * 109.58650 * 186.46265 * 24 15 14 42 42 H 1.08996 * 109.49250 * 174.65763 * 25 24 15 43 43 H 1.09002 * 109.49602 * 294.75299 * 25 24 15 44 44 H 1.09000 * 109.46817 * 59.99939 * 28 26 12 45 45 H 1.08991 * 109.47274 * 179.97438 * 28 26 12 46 46 H 1.08995 * 109.47589 * 300.00425 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3801 0.0003 6 6 2.1704 4.8222 0.0006 7 6 3.6386 2.8013 0.0067 8 6 3.4452 1.4336 0.0011 9 6 4.4956 0.4017 0.0023 10 8 4.1912 -0.7758 0.0025 11 7 5.7943 0.7620 0.0032 12 6 6.8393 -0.2647 0.0039 13 1 6.5098 -1.1196 -0.5866 14 6 7.1148 -0.7129 1.4426 15 7 8.2512 -1.6441 1.4385 16 6 8.1429 -2.8798 2.0186 17 1 8.7411 -3.7018 1.6540 18 6 7.2642 -3.0759 3.0751 19 7 6.7890 -2.0418 3.7364 20 14 6.7562 -4.8073 3.5584 21 1 7.9598 -5.5871 3.9434 22 1 5.8175 -4.7452 4.7075 23 1 6.0867 -5.4659 2.4081 24 6 9.5064 -1.2241 0.8005 25 6 9.2074 -0.7713 -0.6321 26 6 8.1217 0.3112 -0.6012 27 1 8.4637 1.1505 0.0043 28 6 7.8417 0.7916 -2.0266 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1056 5.1794 1.0284 33 1 2.9831 5.3367 -0.5123 34 1 1.2308 5.0234 -0.5140 35 1 4.5904 3.3117 0.0129 36 1 6.0370 1.7011 0.0027 37 1 6.2338 -1.2133 1.8446 38 1 7.3561 0.1553 2.0560 39 1 6.1753 -2.1789 4.4750 40 1 9.9427 -0.3976 1.3615 41 1 10.2044 -2.0612 0.7810 42 1 10.1144 -0.3688 -1.0831 43 1 8.8562 -1.6216 -1.2166 44 1 7.0715 1.5626 -2.0054 45 1 8.7546 1.2022 -2.4575 46 1 7.4990 -0.0475 -2.6321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967708910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:35 Heat of formation + Delta-G solvation = 1.527591 kcal Electronic energy + Delta-G solvation = -28326.798736 eV Core-core repulsion = 24446.356046 eV Total energy + Delta-G solvation = -3880.442690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.51934 -40.63674 -39.35252 -38.88438 -36.00814 -34.61336 -33.81775 -32.80303 -31.80850 -30.08990 -28.91706 -28.83360 -27.12149 -25.84687 -24.44997 -23.09016 -22.58881 -21.91790 -21.26570 -20.80392 -19.01122 -18.72315 -17.94397 -17.34545 -17.05156 -16.83293 -16.43366 -16.01633 -15.94009 -15.67896 -15.49630 -15.18455 -15.00271 -14.82399 -14.44696 -14.05754 -13.92743 -13.55634 -13.48762 -13.42787 -13.22038 -13.00697 -12.87433 -12.69719 -12.55561 -12.32019 -12.16922 -12.12994 -11.93873 -11.87546 -11.57669 -11.39442 -11.14251 -10.77947 -10.52194 -10.23725 -9.98912 -9.48496 -8.65445 -7.87565 -5.33144 0.50808 1.12242 1.28585 1.39098 1.46731 1.50355 2.18327 2.43083 2.52539 2.55956 3.29010 3.40028 3.77304 3.81243 3.91460 4.06292 4.20701 4.22237 4.28817 4.31067 4.38230 4.51270 4.52333 4.55222 4.60515 4.68886 4.70998 4.75305 4.79265 4.79454 4.98691 5.04501 5.18027 5.23910 5.28355 5.37507 5.53130 5.56206 5.58797 5.65163 5.85865 5.89472 6.15574 6.38643 6.50044 6.83568 7.14277 7.53143 7.88575 8.36717 9.16622 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.004281 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.179529 B = 6539.644903 C = 8126.599396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.289 3.711 4 N -0.368 5.368 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.158 3.842 8 C -0.331 4.331 9 C 0.584 3.416 10 O -0.592 6.592 11 N -0.700 5.700 12 C 0.144 3.856 13 H 0.042 0.958 14 C 0.179 3.821 15 N -0.610 5.610 16 C -0.266 4.266 17 H 0.067 0.933 18 C -0.049 4.049 19 N -0.929 5.929 20 Si 0.958 3.042 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.288 1.288 24 C 0.136 3.864 25 C -0.117 4.117 26 C -0.083 4.083 27 H 0.085 0.915 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.244 0.756 36 H 0.411 0.589 37 H 0.037 0.963 38 H 0.002 0.998 39 H 0.246 0.754 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 20.420 -12.150 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.208 6.208 3 C 0.085 3.915 4 N -0.209 5.209 5 N -0.120 5.120 6 C -0.050 4.050 7 C 0.003 3.997 8 C -0.346 4.346 9 C 0.373 3.627 10 O -0.473 6.473 11 N -0.352 5.352 12 C 0.037 3.963 13 H 0.060 0.940 14 C 0.052 3.948 15 N -0.334 5.334 16 C -0.396 4.396 17 H 0.085 0.915 18 C -0.244 4.244 19 N -0.575 5.575 20 Si 0.787 3.213 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.214 1.214 24 C 0.011 3.989 25 C -0.156 4.156 26 C -0.102 4.102 27 H 0.104 0.896 28 C -0.192 4.192 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.153 0.847 34 H 0.115 0.885 35 H 0.260 0.740 36 H 0.248 0.752 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.117 0.883 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.833 19.987 -12.015 24.301 hybrid contribution -0.166 -1.448 0.914 1.720 sum -6.999 18.539 -11.102 22.714 Atomic orbital electron populations 1.23215 0.76019 1.05017 1.02411 1.86486 1.23891 1.22004 1.88385 1.20765 0.90930 0.85450 0.94401 1.77228 1.14389 0.94522 1.34769 1.48188 1.02596 1.07709 1.53518 1.22539 1.06492 0.70379 1.05630 1.23652 0.92950 0.90161 0.92943 1.19797 0.90925 0.94247 1.29632 1.17579 0.82666 0.87334 0.75120 1.90803 1.83042 1.21035 1.52384 1.45523 1.04162 1.10255 1.75252 1.21427 0.87466 0.89941 0.97456 0.94002 1.20792 0.90793 0.91117 0.92076 1.44235 1.08632 1.14941 1.65584 1.19462 1.22867 0.87737 1.09575 0.91538 1.25760 1.01996 1.00380 0.96303 1.70155 1.35219 1.30449 1.21680 0.85471 0.78192 0.80817 0.76859 1.18892 1.22053 1.21425 1.21176 0.87551 0.97515 0.92631 1.22035 0.98878 0.97831 0.96844 1.21315 0.92755 0.98323 0.97819 0.89627 1.21767 1.02569 1.00788 0.94042 0.92149 0.91495 0.86634 0.88752 0.84744 0.88489 0.73968 0.75177 0.94410 0.97959 0.94523 0.95779 0.92869 0.88321 0.93565 0.91383 0.90197 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.70 113.37 1.21 1.94 16 2 O -0.30 -11.58 9.98 -86.75 -0.87 -12.45 16 3 C 0.29 10.04 7.85 85.70 0.67 10.71 16 4 N -0.37 -10.23 11.90 -169.99 -2.02 -12.25 16 5 N -0.34 -6.14 3.97 -367.78 -1.46 -7.61 16 6 C 0.09 0.49 11.44 127.77 1.46 1.95 16 7 C 0.16 2.91 10.98 84.31 0.93 3.84 16 8 C -0.33 -10.69 6.14 -20.08 -0.12 -10.81 16 9 C 0.58 23.76 7.77 86.61 0.67 24.44 16 10 O -0.59 -31.88 16.10 1.03 0.02 -31.86 16 11 N -0.70 -23.37 4.36 -445.59 -1.94 -25.31 16 12 C 0.14 5.81 2.07 45.07 0.09 5.91 16 13 H 0.04 2.05 7.58 -2.39 -0.02 2.03 16 14 C 0.18 9.36 4.88 86.37 0.42 9.78 16 15 N -0.61 -32.58 2.99 -699.07 -2.09 -34.67 16 16 C -0.27 -15.85 9.58 84.03 0.81 -15.05 16 17 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 18 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 19 N -0.93 -59.92 11.20 21.65 0.24 -59.67 16 20 Si 0.96 49.61 29.59 68.60 2.03 51.64 16 21 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 23 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 24 C 0.14 5.62 6.50 86.36 0.56 6.18 16 25 C -0.12 -3.71 5.39 30.78 0.17 -3.54 16 26 C -0.08 -2.45 2.27 -10.66 -0.02 -2.47 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 C -0.13 -2.95 9.02 71.98 0.65 -2.30 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.33 16 33 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.24 1.47 7.46 -2.91 -0.02 1.45 16 36 H 0.41 9.18 7.22 -92.71 -0.67 8.51 16 37 H 0.04 2.41 6.06 -2.39 -0.01 2.39 16 38 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 39 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 2.16 7.93 -2.39 -0.02 2.15 16 42 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 1.25 7.35 -2.39 -0.02 1.23 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -95.39 376.56 2.13 -93.26 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.31 Total: 10.92 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 7.91 Total: 28.01 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -7.28 Total: -139.51 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.85 Total: -44.31 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.03 Total: 51.64 kcal Total: -95.39 2.13 -93.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967708910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.792 kcal (2) G-P(sol) polarization free energy of solvation -95.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds