Wall clock time and date at job start Tue Mar 31 2020 14:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35350 * 117.00488 * 2 1 4 4 C 1.38996 * 126.40043 * 269.14292 * 3 2 1 5 5 C 1.46926 * 126.49838 * 0.02562 * 4 3 2 6 6 O 1.21665 * 119.99590 * 359.71169 * 5 4 3 7 7 N 1.34778 * 119.99919 * 179.71110 * 5 4 3 8 8 C 1.46497 * 119.99868 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.49833 * 34.93529 * 8 7 5 10 10 C 1.53191 * 109.49748 * 274.84205 * 8 7 5 11 11 N 1.46923 * 108.77414 * 294.68049 * 10 8 7 12 12 C 1.36940 * 120.63322 * 126.36614 * 11 10 8 13 13 H 1.07999 * 119.99695 * 329.40783 * 12 11 10 14 14 C 1.38814 * 119.99994 * 149.39972 * 12 11 10 15 15 N 1.31619 * 119.99718 * 160.65064 * 14 12 11 16 16 Si 1.86800 * 120.00094 * 340.65148 * 14 12 11 17 17 H 1.48492 * 109.47353 * 92.42618 * 16 14 12 18 18 H 1.48501 * 109.46992 * 212.43050 * 16 14 12 19 19 H 1.48506 * 109.47049 * 332.42422 * 16 14 12 20 20 C 1.46928 * 118.74059 * 306.39467 * 11 10 8 21 21 C 1.53197 * 108.77582 * 53.60771 * 20 11 10 22 22 C 1.53036 * 109.49733 * 154.99958 * 8 7 5 23 23 H 1.09003 * 109.46017 * 178.59241 * 22 8 7 24 24 C 1.52997 * 109.46368 * 298.56329 * 22 8 7 25 25 C 1.41465 * 107.00623 * 179.75116 * 4 3 2 26 26 N 1.30319 * 108.13424 * 0.24587 * 25 4 3 27 27 N 1.34658 * 126.41110 * 89.31142 * 3 2 1 28 28 C 1.46504 * 125.74076 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.47193 * 304.41922 * 1 2 3 30 30 H 1.09006 * 109.46773 * 64.41170 * 1 2 3 31 31 H 1.08993 * 109.47773 * 184.41485 * 1 2 3 32 32 H 0.96998 * 119.99614 * 0.27371 * 7 5 4 33 33 H 1.08995 * 109.59313 * 54.46830 * 10 8 7 34 34 H 1.08999 * 109.58791 * 174.90059 * 10 8 7 35 35 H 0.96999 * 119.99585 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.58846 * 293.81940 * 20 11 10 37 37 H 1.08997 * 109.70661 * 173.45878 * 20 11 10 38 38 H 1.09002 * 109.49647 * 185.41884 * 21 20 11 39 39 H 1.08999 * 109.50147 * 65.31770 * 21 20 11 40 40 H 1.09004 * 109.46674 * 60.00126 * 24 22 8 41 41 H 1.08996 * 109.47664 * 180.02562 * 24 22 8 42 42 H 1.08996 * 109.47280 * 300.00539 * 24 22 8 43 43 H 1.07994 * 125.93259 * 180.25576 * 25 4 3 44 44 H 1.08996 * 109.47298 * 266.40853 * 28 27 3 45 45 H 1.09001 * 109.47242 * 26.41148 * 28 27 3 46 46 H 1.08997 * 109.46744 * 146.40811 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4330 1.9332 -1.1186 5 6 2.2551 1.5390 -2.5228 6 8 1.7244 0.4783 -2.7942 7 7 2.6796 2.3523 -3.5101 8 6 2.5017 1.9595 -4.9101 9 1 1.5667 1.4095 -5.0177 10 6 3.6713 1.0706 -5.3443 11 7 4.9059 1.8667 -5.3168 12 6 5.9991 1.4348 -4.6142 13 1 5.8674 0.8375 -3.7241 14 6 7.2764 1.7648 -5.0460 15 7 8.2915 1.6962 -4.2110 16 14 7.5546 2.3061 -6.8121 17 1 7.4688 3.7862 -6.8955 18 1 8.8990 1.8621 -7.2600 19 1 6.5170 1.7001 -7.6848 20 6 4.9451 3.1352 -6.0570 21 6 3.7612 4.0010 -5.6148 22 6 2.4626 3.2105 -5.7907 23 1 2.3553 2.9165 -6.8348 24 6 1.2747 4.0842 -5.3826 25 6 3.0274 3.1280 -0.6490 26 7 2.9988 3.1104 0.6537 27 7 2.3949 1.9240 1.0836 28 6 2.1765 1.5313 2.4781 29 1 -0.3634 0.5809 0.8478 30 1 -0.3633 0.4439 -0.9269 31 1 -0.3634 -1.0245 0.0791 32 1 3.1062 3.1961 -3.2935 33 1 3.7644 0.2283 -4.6589 34 1 3.4957 0.7037 -6.3556 35 1 9.1840 1.9271 -4.5127 36 1 4.8733 2.9368 -7.1264 37 1 5.8784 3.6564 -5.8440 38 1 3.7229 4.9038 -6.2244 39 1 3.8817 4.2741 -4.5664 40 1 1.3817 4.3780 -4.3383 41 1 1.2464 4.9751 -6.0099 42 1 0.3497 3.5218 -5.5089 43 1 3.4340 3.9176 -1.2634 44 1 1.2361 1.9539 2.8316 45 1 2.1351 0.4443 2.5472 46 1 2.9960 1.9035 3.0928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968593348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:38 Heat of formation + Delta-G solvation = 10.462369 kcal Electronic energy + Delta-G solvation = -28938.500125 eV Core-core repulsion = 25058.444876 eV Total energy + Delta-G solvation = -3880.055249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.61977 -40.86658 -39.21700 -38.93521 -35.98831 -34.56197 -33.94059 -33.33346 -31.50017 -30.65752 -29.13266 -28.29588 -27.69032 -25.61150 -24.45355 -23.69826 -22.82207 -22.16660 -21.37158 -20.27519 -19.41127 -18.65534 -17.92585 -17.49519 -17.13092 -16.99950 -16.38690 -15.96308 -15.82582 -15.63140 -15.44478 -15.14197 -15.11070 -14.77103 -14.69078 -14.60986 -14.18817 -13.77175 -13.59939 -13.57341 -13.51203 -13.01363 -12.89709 -12.87708 -12.59174 -12.40451 -12.32144 -12.17251 -11.79071 -11.53157 -11.36906 -11.26288 -11.12027 -10.81359 -10.67966 -10.50179 -10.02975 -9.65015 -8.75607 -8.12490 -5.46613 0.16654 1.05912 1.09644 1.32399 1.44808 1.54299 2.27054 2.44967 2.53043 2.63063 3.12918 3.36881 3.39507 3.83199 3.96800 3.98969 4.01649 4.08973 4.18432 4.31636 4.35616 4.36282 4.40904 4.55969 4.58889 4.60029 4.64816 4.67450 4.76925 4.83457 4.92443 5.02821 5.06477 5.07356 5.08976 5.21113 5.26657 5.33587 5.44956 5.54135 5.75308 5.93554 6.16891 6.25875 6.38494 6.75863 6.98275 7.43421 7.67077 8.07518 9.08159 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004365 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.432886 B = 6413.067828 C = 7260.500523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.316 6.316 3 C 0.314 3.686 4 C -0.321 4.321 5 C 0.592 3.408 6 O -0.586 6.586 7 N -0.691 5.691 8 C 0.145 3.855 9 H 0.085 0.915 10 C 0.135 3.865 11 N -0.610 5.610 12 C -0.237 4.237 13 H 0.032 0.968 14 C -0.033 4.033 15 N -0.960 5.960 16 Si 0.953 3.047 17 H -0.267 1.267 18 H -0.316 1.316 19 H -0.263 1.263 20 C 0.117 3.883 21 C -0.122 4.122 22 C -0.086 4.086 23 H 0.090 0.910 24 C -0.135 4.135 25 C 0.097 3.903 26 N -0.293 5.293 27 N -0.366 5.366 28 C 0.083 3.917 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.126 0.874 32 H 0.403 0.597 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.213 0.787 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.963 6.096 7.279 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.225 6.225 3 C 0.139 3.861 4 C -0.337 4.337 5 C 0.380 3.620 6 O -0.468 6.468 7 N -0.341 5.341 8 C 0.039 3.961 9 H 0.103 0.897 10 C 0.009 3.991 11 N -0.334 5.334 12 C -0.367 4.367 13 H 0.049 0.951 14 C -0.227 4.227 15 N -0.606 5.606 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.246 1.246 19 H -0.187 1.187 20 C -0.007 4.007 21 C -0.161 4.161 22 C -0.105 4.105 23 H 0.109 0.891 24 C -0.193 4.193 25 C -0.089 4.089 26 N -0.116 5.116 27 N -0.155 5.155 28 C -0.056 4.056 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.240 0.760 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.229 0.771 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.884 5.698 8.285 22.282 hybrid contribution 0.972 -0.359 -1.106 1.516 sum -18.912 5.339 7.179 20.922 Atomic orbital electron populations 1.23328 0.74799 1.05830 1.01647 1.85969 1.23300 1.20215 1.93053 1.19382 0.95012 0.84866 0.86873 1.20200 1.20021 1.00249 0.93237 1.17179 0.77355 0.83148 0.84293 1.90714 1.47037 1.24250 1.84771 1.45556 1.60344 1.22831 1.05366 1.21375 0.97650 0.96644 0.80475 0.89674 1.21420 0.86315 0.93162 0.98212 1.44300 1.10618 1.19781 1.58737 1.18627 0.84815 1.30238 1.03058 0.95051 1.25976 0.94925 1.00567 1.01266 1.69983 1.00411 1.54156 1.36083 0.85801 0.75515 0.78342 0.82200 1.19269 1.24560 1.18733 1.21463 0.98339 0.86467 0.94458 1.22007 0.93761 0.98375 1.01938 1.21288 0.95696 0.93921 0.99557 0.89131 1.21749 0.96255 0.99527 1.01727 1.24212 0.95772 0.96962 0.91981 1.77157 1.20130 1.00900 1.13401 1.49237 1.44870 1.13747 1.07641 1.22383 1.05221 1.02919 0.75070 0.91042 0.93625 0.85596 0.76017 0.95051 0.94035 0.93104 0.94909 0.93173 0.89055 0.92071 0.92742 0.90809 0.92453 0.77053 0.87765 0.87802 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 11.13 113.37 1.26 2.00 16 2 O -0.32 -9.22 9.75 -79.46 -0.78 -9.99 16 3 C 0.31 9.62 6.98 84.44 0.59 10.21 16 4 C -0.32 -10.77 6.15 -20.03 -0.12 -10.89 16 5 C 0.59 22.01 7.76 86.52 0.67 22.68 16 6 O -0.59 -25.06 16.04 2.71 0.04 -25.01 16 7 N -0.69 -22.84 4.24 -445.91 -1.89 -24.73 16 8 C 0.14 4.69 2.24 45.07 0.10 4.79 16 9 H 0.09 2.74 7.58 -2.39 -0.02 2.73 16 10 C 0.14 5.60 6.12 86.36 0.53 6.13 16 11 N -0.61 -28.43 2.64 -699.10 -1.84 -30.27 16 12 C -0.24 -13.79 10.01 84.03 0.84 -12.95 16 13 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 14 C -0.03 -1.94 5.23 84.86 0.44 -1.50 16 15 N -0.96 -61.48 13.97 21.65 0.30 -61.18 16 16 Si 0.95 46.74 24.38 68.60 1.67 48.42 16 17 H -0.27 -12.01 6.66 99.48 0.66 -11.35 16 18 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 19 H -0.26 -12.38 6.70 99.48 0.67 -11.71 16 20 C 0.12 4.61 4.21 86.36 0.36 4.97 16 21 C -0.12 -3.45 5.20 30.67 0.16 -3.29 16 22 C -0.09 -2.16 2.48 -10.77 -0.03 -2.19 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 C -0.14 -2.59 9.05 71.98 0.65 -1.94 16 25 C 0.10 2.83 11.50 85.71 0.99 3.81 16 26 N -0.29 -8.42 12.47 -56.23 -0.70 -9.12 16 27 N -0.37 -9.44 3.99 -479.80 -1.91 -11.36 16 28 C 0.08 1.22 11.41 127.77 1.46 2.68 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.40 12.16 5.59 -92.71 -0.52 11.64 16 33 H 0.03 1.51 7.93 -2.39 -0.02 1.49 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.03 1.25 7.05 -2.39 -0.02 1.23 16 37 H 0.05 2.20 4.83 -2.39 -0.01 2.19 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.75 6.40 -2.39 -0.02 1.74 16 40 H 0.05 1.06 7.55 -2.39 -0.02 1.04 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.21 4.94 7.50 -2.91 -0.02 4.92 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 1.29 8.04 -2.39 -0.02 1.27 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -80.94 367.68 3.19 -77.76 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.39 Total: 20.98 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 7.90 Total: 24.51 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -6.05 Total: -136.66 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.73 Total: -35.00 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.67 Total: 48.42 kcal Total: -80.94 3.19 -77.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968593348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.221 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds