Wall clock time and date at job start Tue Mar 31 2020 14:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35353 * 116.99589 * 2 1 4 4 C 1.39000 * 126.40619 * 264.30464 * 3 2 1 5 5 C 1.46921 * 126.49773 * 359.97438 * 4 3 2 6 6 O 1.21668 * 119.99850 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00314 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99975 * 179.97438 * 7 5 4 9 9 H 1.08992 * 109.50366 * 325.06990 * 8 7 5 10 10 C 1.53196 * 109.49783 * 85.16730 * 8 7 5 11 11 N 1.46925 * 108.77741 * 174.58092 * 10 8 7 12 12 C 1.36940 * 120.62389 * 126.37245 * 11 10 8 13 13 H 1.07999 * 119.99593 * 207.62214 * 12 11 10 14 14 C 1.38806 * 120.00542 * 27.62180 * 12 11 10 15 15 N 1.31618 * 120.00174 * 16.25148 * 14 12 11 16 16 Si 1.86799 * 119.99894 * 196.25629 * 14 12 11 17 17 H 1.48501 * 109.47406 * 60.00289 * 16 14 12 18 18 H 1.48506 * 109.47202 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47403 * 299.99561 * 16 14 12 20 20 C 1.46919 * 118.73987 * 306.38992 * 11 10 8 21 21 C 1.53196 * 108.77459 * 53.61009 * 20 11 10 22 22 C 1.53033 * 109.31237 * 305.36270 * 21 20 11 23 23 H 1.09000 * 109.45933 * 301.34824 * 22 21 20 24 24 C 1.53001 * 109.46293 * 181.38548 * 22 21 20 25 25 C 1.41466 * 107.00661 * 179.97438 * 4 3 2 26 26 N 1.30317 * 108.13734 * 359.97438 * 25 4 3 27 27 N 1.34657 * 126.40596 * 84.28042 * 3 2 1 28 28 C 1.46499 * 125.74177 * 0.05490 * 27 3 2 29 29 H 1.09004 * 109.47161 * 304.66923 * 1 2 3 30 30 H 1.09001 * 109.47997 * 64.66868 * 1 2 3 31 31 H 1.08999 * 109.47050 * 184.67407 * 1 2 3 32 32 H 0.96995 * 119.99616 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.58626 * 294.37469 * 10 8 7 34 34 H 1.09011 * 109.58487 * 54.79212 * 10 8 7 35 35 H 0.96996 * 120.00098 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.58878 * 293.81984 * 20 11 10 37 37 H 1.09002 * 109.70155 * 173.46206 * 20 11 10 38 38 H 1.09001 * 109.49609 * 185.41039 * 21 20 11 39 39 H 1.08995 * 109.49509 * 65.31305 * 21 20 11 40 40 H 1.09002 * 109.47015 * 299.93242 * 24 22 21 41 41 H 1.09003 * 109.46779 * 59.93137 * 24 22 21 42 42 H 1.08992 * 109.47588 * 179.97438 * 24 22 21 43 43 H 1.07997 * 125.93166 * 180.02562 * 25 4 3 44 44 H 1.08999 * 109.47000 * 275.37205 * 28 27 3 45 45 H 1.09000 * 109.46797 * 35.36958 * 28 27 3 46 46 H 1.08998 * 109.47531 * 155.37015 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.5167 1.8907 -1.1132 5 6 2.4453 1.4424 -2.5105 6 8 1.9310 0.3734 -2.7808 7 7 2.9486 2.2157 -3.4930 8 6 2.8778 1.7683 -4.8861 9 1 2.9955 0.6855 -4.9270 10 6 1.5208 2.1586 -5.4802 11 7 1.5155 1.8203 -6.9100 12 6 0.5221 1.0400 -7.4385 13 1 0.7175 0.4351 -8.3116 14 6 -0.7360 1.0264 -6.8523 15 7 -1.0786 1.9756 -6.0073 16 14 -1.9429 -0.3391 -7.2624 17 1 -1.3559 -1.6492 -6.8824 18 1 -3.2056 -0.1263 -6.5103 19 1 -2.2265 -0.3278 -8.7200 20 6 2.5965 2.3349 -7.7616 21 6 3.9415 1.9426 -7.1421 22 6 3.9943 2.4343 -5.6938 23 1 3.8621 3.5160 -5.6726 24 6 5.3498 2.0746 -5.0824 25 6 3.0804 3.1011 -0.6457 26 7 2.9513 3.1346 0.6506 27 7 2.3099 1.9672 1.0784 28 6 1.9832 1.6296 2.4660 29 1 -0.3634 0.5846 0.8452 30 1 -0.3635 0.4397 -0.9288 31 1 -0.3633 -1.0242 0.0837 32 1 3.3582 3.0681 -3.2775 33 1 0.7279 1.6099 -4.9719 34 1 1.3628 3.2302 -5.3576 35 1 -1.9579 1.9663 -5.5979 36 1 2.5262 3.4207 -7.8252 37 1 2.5145 1.9043 -8.7597 38 1 4.7512 2.3994 -7.7111 39 1 4.0488 0.8581 -7.1622 40 1 5.4821 0.9928 -5.1029 41 1 6.1451 2.5488 -5.6575 42 1 5.3878 2.4251 -4.0511 43 1 3.5374 3.8651 -1.2570 44 1 0.9558 1.9243 2.6794 45 1 2.0910 0.5550 2.6135 46 1 2.6598 2.1581 3.1375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968593349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:42 Heat of formation + Delta-G solvation = 31.539502 kcal Electronic energy + Delta-G solvation = -28586.289720 eV Core-core repulsion = 24707.148444 eV Total energy + Delta-G solvation = -3879.141276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56932 -39.13705 -38.14553 -37.29683 -34.21599 -33.54600 -32.87866 -30.90583 -30.08935 -28.88145 -27.54005 -27.02045 -26.78253 -24.02945 -23.08668 -21.79922 -21.12513 -20.78823 -19.82108 -19.33079 -18.14844 -16.74775 -16.64236 -16.46018 -15.85078 -15.13222 -14.82441 -14.75706 -14.60737 -14.08695 -13.76242 -13.72863 -13.65610 -13.39318 -13.25137 -12.98297 -12.90182 -12.69129 -12.31998 -12.00077 -11.90988 -11.57009 -11.50648 -11.37081 -10.83776 -10.65644 -10.52900 -10.37506 -10.30359 -10.11790 -9.88108 -9.81371 -9.55927 -9.42018 -9.23862 -8.67666 -8.36711 -8.29912 -6.58644 -5.69264 -3.12635 1.22942 2.01301 2.16252 3.44197 3.45758 3.50924 3.54251 3.73100 3.91068 4.30957 4.59121 4.81866 4.83843 4.93982 5.10131 5.11922 5.24230 5.26628 5.31337 5.34896 5.47493 5.55073 5.62177 5.65687 5.76561 5.98138 6.00910 6.10195 6.11647 6.20097 6.28106 6.36233 6.48908 6.54118 6.64275 6.81486 6.85407 7.03982 7.12106 7.28552 7.38047 7.41925 7.81918 7.90307 8.13947 8.54933 8.88669 9.29691 9.93722 10.48413 11.38340 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012052 B = 0.004495 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.732690 B = 6227.866339 C = 7993.224429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.296 6.296 3 C 0.316 3.684 4 C -0.285 4.285 5 C 0.589 3.411 6 O -0.531 6.531 7 N -0.715 5.715 8 C 0.127 3.873 9 H 0.082 0.918 10 C 0.167 3.833 11 N -0.589 5.589 12 C -0.254 4.254 13 H 0.065 0.935 14 C 0.007 3.993 15 N -0.900 5.900 16 Si 0.902 3.098 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.283 1.283 20 C 0.143 3.857 21 C -0.125 4.125 22 C -0.092 4.092 23 H 0.066 0.934 24 C -0.144 4.144 25 C 0.090 3.910 26 N -0.283 5.283 27 N -0.375 5.375 28 C 0.095 3.905 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.389 0.611 33 H 0.097 0.903 34 H 0.016 0.984 35 H 0.253 0.747 36 H 0.017 0.983 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.194 0.806 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.030 2.331 14.625 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.205 6.205 3 C 0.144 3.856 4 C -0.300 4.300 5 C 0.375 3.625 6 O -0.407 6.407 7 N -0.365 5.365 8 C 0.022 3.978 9 H 0.100 0.900 10 C 0.040 3.960 11 N -0.312 5.312 12 C -0.384 4.384 13 H 0.083 0.917 14 C -0.192 4.192 15 N -0.544 5.544 16 Si 0.731 3.269 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.210 1.210 20 C 0.016 3.984 21 C -0.165 4.165 22 C -0.111 4.111 23 H 0.085 0.915 24 C -0.201 4.201 25 C -0.097 4.097 26 N -0.106 5.106 27 N -0.165 5.165 28 C -0.046 4.046 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.222 0.778 33 H 0.115 0.885 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.211 0.789 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.691 1.924 15.647 18.002 hybrid contribution -0.809 -0.519 -0.567 1.116 sum 7.882 1.405 15.081 17.074 Atomic orbital electron populations 1.23153 0.76600 1.04151 1.01747 1.86013 1.21425 1.20198 1.92837 1.19343 0.95263 0.84671 0.86364 1.20239 1.17504 0.98399 0.93885 1.16897 0.78399 0.84182 0.83038 1.90843 1.44008 1.22366 1.83517 1.45775 1.61197 1.22391 1.07138 1.21942 0.98152 0.99636 0.78052 0.90034 1.21125 0.92990 0.97622 0.84305 1.43961 1.25785 1.58672 1.02736 1.19114 0.88992 1.17660 1.12618 0.91709 1.25003 0.96630 0.97584 1.00009 1.70001 1.20148 1.31366 1.32929 0.86384 0.80337 0.82489 0.77648 1.20896 1.21716 1.20952 1.20949 0.87359 0.95944 0.94132 1.22067 0.99043 1.01017 0.94381 1.21305 0.93970 0.99956 0.95899 0.91533 1.21846 0.96796 1.01426 1.00047 1.23905 0.97382 0.96492 0.91888 1.77165 1.18539 1.01341 1.13572 1.48909 1.46019 1.14565 1.07001 1.21950 1.02288 1.02533 0.77844 0.93776 0.91477 0.87655 0.77792 0.88534 0.96625 0.93733 0.96481 0.92722 0.92705 0.92137 0.92980 0.93258 0.93136 0.78905 0.90538 0.89207 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.13 101.05 1.12 1.59 16 2 O -0.30 -4.50 9.83 -25.00 -0.25 -4.75 16 3 C 0.32 4.77 6.99 -16.03 -0.11 4.66 16 4 C -0.28 -4.52 6.15 -104.87 -0.64 -5.16 16 5 C 0.59 11.18 7.76 -12.75 -0.10 11.08 16 6 O -0.53 -12.44 16.04 -2.03 -0.03 -12.48 16 7 N -0.71 -12.10 4.36 -54.92 -0.24 -12.33 16 8 C 0.13 2.52 2.06 -67.81 -0.14 2.38 16 9 H 0.08 1.87 7.58 -51.93 -0.39 1.47 16 10 C 0.17 4.10 4.88 -3.71 -0.02 4.08 16 11 N -0.59 -15.10 3.00 -172.32 -0.52 -15.62 16 12 C -0.25 -7.21 9.60 -15.06 -0.14 -7.35 16 13 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 14 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 15 N -0.90 -26.97 11.11 55.49 0.62 -26.36 16 16 Si 0.90 22.64 29.58 -169.99 -5.03 17.61 16 17 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.14 2.98 6.51 -3.71 -0.02 2.96 16 21 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 22 C -0.09 -1.49 2.27 -90.58 -0.21 -1.70 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 C -0.14 -1.92 9.02 37.16 0.34 -1.59 16 25 C 0.09 1.14 11.50 -16.97 -0.20 0.95 16 26 N -0.28 -3.70 12.48 30.88 0.39 -3.31 16 27 N -0.37 -4.66 3.99 -67.67 -0.27 -4.93 16 28 C 0.09 0.72 11.38 59.85 0.68 1.40 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.39 5.16 7.25 -40.82 -0.30 4.86 16 33 H 0.10 2.81 5.99 -51.93 -0.31 2.50 16 34 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 43 H 0.19 1.71 7.50 -52.49 -0.39 1.31 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -35.92 376.91 -6.56 -42.47 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.23 Total: 2.90 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 0.33 Total: 11.11 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.02 Total: -62.55 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.28 Total: -17.22 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.92 -6.56 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968593349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.014 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds