Wall clock time and date at job start Tue Mar 31 2020 14:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35353 * 116.99589 * 2 1 4 4 C 1.39000 * 126.40619 * 264.30464 * 3 2 1 5 5 C 1.46921 * 126.49773 * 359.97438 * 4 3 2 6 6 O 1.21668 * 119.99850 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00314 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99975 * 179.97438 * 7 5 4 9 9 H 1.08992 * 109.50366 * 325.06990 * 8 7 5 10 10 C 1.53196 * 109.49783 * 85.16730 * 8 7 5 11 11 N 1.46925 * 108.77741 * 174.58092 * 10 8 7 12 12 C 1.36940 * 120.62389 * 126.37245 * 11 10 8 13 13 H 1.07999 * 119.99593 * 207.62214 * 12 11 10 14 14 C 1.38806 * 120.00542 * 27.62180 * 12 11 10 15 15 N 1.31618 * 120.00174 * 16.25148 * 14 12 11 16 16 Si 1.86799 * 119.99894 * 196.25629 * 14 12 11 17 17 H 1.48501 * 109.47406 * 60.00289 * 16 14 12 18 18 H 1.48506 * 109.47202 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47403 * 299.99561 * 16 14 12 20 20 C 1.46919 * 118.73987 * 306.38992 * 11 10 8 21 21 C 1.53196 * 108.77459 * 53.61009 * 20 11 10 22 22 C 1.53033 * 109.31237 * 305.36270 * 21 20 11 23 23 H 1.09000 * 109.45933 * 301.34824 * 22 21 20 24 24 C 1.53001 * 109.46293 * 181.38548 * 22 21 20 25 25 C 1.41466 * 107.00661 * 179.97438 * 4 3 2 26 26 N 1.30317 * 108.13734 * 359.97438 * 25 4 3 27 27 N 1.34657 * 126.40596 * 84.28042 * 3 2 1 28 28 C 1.46499 * 125.74177 * 0.05490 * 27 3 2 29 29 H 1.09004 * 109.47161 * 304.66923 * 1 2 3 30 30 H 1.09001 * 109.47997 * 64.66868 * 1 2 3 31 31 H 1.08999 * 109.47050 * 184.67407 * 1 2 3 32 32 H 0.96995 * 119.99616 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.58626 * 294.37469 * 10 8 7 34 34 H 1.09011 * 109.58487 * 54.79212 * 10 8 7 35 35 H 0.96996 * 120.00098 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.58878 * 293.81984 * 20 11 10 37 37 H 1.09002 * 109.70155 * 173.46206 * 20 11 10 38 38 H 1.09001 * 109.49609 * 185.41039 * 21 20 11 39 39 H 1.08995 * 109.49509 * 65.31305 * 21 20 11 40 40 H 1.09002 * 109.47015 * 299.93242 * 24 22 21 41 41 H 1.09003 * 109.46779 * 59.93137 * 24 22 21 42 42 H 1.08992 * 109.47588 * 179.97438 * 24 22 21 43 43 H 1.07997 * 125.93166 * 180.02562 * 25 4 3 44 44 H 1.08999 * 109.47000 * 275.37205 * 28 27 3 45 45 H 1.09000 * 109.46797 * 35.36958 * 28 27 3 46 46 H 1.08998 * 109.47531 * 155.37015 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.5167 1.8907 -1.1132 5 6 2.4453 1.4424 -2.5105 6 8 1.9310 0.3734 -2.7808 7 7 2.9486 2.2157 -3.4930 8 6 2.8778 1.7683 -4.8861 9 1 2.9955 0.6855 -4.9270 10 6 1.5208 2.1586 -5.4802 11 7 1.5155 1.8203 -6.9100 12 6 0.5221 1.0400 -7.4385 13 1 0.7175 0.4351 -8.3116 14 6 -0.7360 1.0264 -6.8523 15 7 -1.0786 1.9756 -6.0073 16 14 -1.9429 -0.3391 -7.2624 17 1 -1.3559 -1.6492 -6.8824 18 1 -3.2056 -0.1263 -6.5103 19 1 -2.2265 -0.3278 -8.7200 20 6 2.5965 2.3349 -7.7616 21 6 3.9415 1.9426 -7.1421 22 6 3.9943 2.4343 -5.6938 23 1 3.8621 3.5160 -5.6726 24 6 5.3498 2.0746 -5.0824 25 6 3.0804 3.1011 -0.6457 26 7 2.9513 3.1346 0.6506 27 7 2.3099 1.9672 1.0784 28 6 1.9832 1.6296 2.4660 29 1 -0.3634 0.5846 0.8452 30 1 -0.3635 0.4397 -0.9288 31 1 -0.3633 -1.0242 0.0837 32 1 3.3582 3.0681 -3.2775 33 1 0.7279 1.6099 -4.9719 34 1 1.3628 3.2302 -5.3576 35 1 -1.9579 1.9663 -5.5979 36 1 2.5262 3.4207 -7.8252 37 1 2.5145 1.9043 -8.7597 38 1 4.7512 2.3994 -7.7111 39 1 4.0488 0.8581 -7.1622 40 1 5.4821 0.9928 -5.1029 41 1 6.1451 2.5488 -5.6575 42 1 5.3878 2.4251 -4.0511 43 1 3.5374 3.8651 -1.2570 44 1 0.9558 1.9243 2.6794 45 1 2.0910 0.5550 2.6135 46 1 2.6598 2.1581 3.1375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968593349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:41 Heat of formation + Delta-G solvation = 4.949504 kcal Electronic energy + Delta-G solvation = -28587.442749 eV Core-core repulsion = 24707.148444 eV Total energy + Delta-G solvation = -3880.294305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.63220 -40.67014 -39.23637 -38.91134 -36.01773 -34.74200 -34.23951 -32.78115 -31.32227 -30.33331 -29.00605 -28.28916 -27.70309 -25.86623 -24.50206 -23.15066 -22.61820 -22.00880 -21.30533 -20.81240 -19.29990 -18.73135 -17.87836 -17.51540 -17.21895 -16.77567 -16.38771 -15.80714 -15.77086 -15.62607 -15.47535 -15.19859 -14.84783 -14.82978 -14.72390 -14.33764 -14.03898 -13.61202 -13.59521 -13.48580 -13.23174 -13.01441 -12.96112 -12.69252 -12.55586 -12.47244 -12.31834 -12.13621 -11.87794 -11.58844 -11.46366 -11.29975 -11.15227 -10.79223 -10.52303 -10.50597 -10.06731 -9.68081 -8.65929 -7.86639 -5.32687 0.10932 1.07803 1.08147 1.40636 1.46574 1.51050 2.31668 2.33992 2.51615 2.63629 3.28928 3.37890 3.78744 3.87307 3.95352 4.00666 4.05324 4.10085 4.21847 4.26810 4.30953 4.36371 4.53606 4.56145 4.59912 4.62683 4.68813 4.74565 4.78257 4.97290 5.02239 5.03396 5.16762 5.22662 5.26964 5.32420 5.37990 5.51233 5.55687 5.57805 5.64736 5.86439 6.23118 6.36467 6.39295 6.77181 7.14266 7.46578 7.88024 8.36620 9.17611 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012052 B = 0.004495 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.732690 B = 6227.866339 C = 7993.224429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.314 6.314 3 C 0.308 3.692 4 C -0.317 4.317 5 C 0.585 3.415 6 O -0.588 6.588 7 N -0.700 5.700 8 C 0.144 3.856 9 H 0.045 0.955 10 C 0.180 3.820 11 N -0.610 5.610 12 C -0.266 4.266 13 H 0.067 0.933 14 C -0.049 4.049 15 N -0.930 5.930 16 Si 0.961 3.039 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.267 1.267 20 C 0.136 3.864 21 C -0.116 4.116 22 C -0.085 4.085 23 H 0.082 0.918 24 C -0.135 4.135 25 C 0.103 3.897 26 N -0.288 5.288 27 N -0.366 5.366 28 C 0.082 3.918 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.126 0.874 32 H 0.410 0.590 33 H 0.044 0.956 34 H 0.000 1.000 35 H 0.246 0.754 36 H 0.023 0.977 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.230 0.770 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.117 3.445 15.693 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.223 6.223 3 C 0.133 3.867 4 C -0.333 4.333 5 C 0.374 3.626 6 O -0.469 6.469 7 N -0.351 5.351 8 C 0.038 3.962 9 H 0.064 0.936 10 C 0.052 3.948 11 N -0.334 5.334 12 C -0.396 4.396 13 H 0.085 0.915 14 C -0.244 4.244 15 N -0.576 5.576 16 Si 0.789 3.211 17 H -0.212 1.212 18 H -0.219 1.219 19 H -0.192 1.192 20 C 0.011 3.989 21 C -0.155 4.155 22 C -0.104 4.104 23 H 0.101 0.899 24 C -0.192 4.192 25 C -0.083 4.083 26 N -0.111 5.111 27 N -0.155 5.155 28 C -0.057 4.057 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.144 0.856 32 H 0.247 0.753 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.246 0.754 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.829 3.089 16.735 20.171 hybrid contribution -1.473 -0.856 -0.849 1.903 sum 9.357 2.233 15.886 18.571 Atomic orbital electron populations 1.23274 0.75365 1.05825 1.01165 1.85966 1.22694 1.20689 1.92985 1.19509 0.95160 0.84713 0.87285 1.20107 1.20267 1.00565 0.92386 1.17411 0.77172 0.83472 0.84559 1.90805 1.46544 1.24944 1.84569 1.45533 1.60719 1.23083 1.05752 1.21456 0.97007 0.97941 0.79838 0.93639 1.20807 0.94288 0.95522 0.84136 1.44244 1.26474 1.58963 1.03707 1.19480 0.89775 1.17857 1.12481 0.91529 1.25752 0.98483 0.99684 1.00512 1.70161 1.20128 1.33058 1.34264 0.85441 0.78062 0.79501 0.78125 1.21243 1.21901 1.19235 1.21168 0.87859 0.96023 0.93835 1.21971 0.97753 1.00612 0.95193 1.21273 0.94093 1.00271 0.94745 0.89940 1.21770 0.95284 1.00978 1.01185 1.24373 0.96295 0.95744 0.91905 1.77155 1.18677 1.01633 1.13606 1.49239 1.44658 1.13612 1.07980 1.22397 1.03953 1.03798 0.75524 0.90543 0.95111 0.85600 0.75269 0.93728 0.98247 0.94462 0.95931 0.92734 0.88508 0.93373 0.94196 0.90296 0.91685 0.75398 0.88610 0.87976 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 11.13 113.37 1.26 2.21 16 2 O -0.31 -9.71 9.83 -79.50 -0.78 -10.49 16 3 C 0.31 9.22 6.99 84.44 0.59 9.81 16 4 C -0.32 -10.08 6.15 -20.03 -0.12 -10.20 16 5 C 0.59 23.06 7.76 86.52 0.67 23.73 16 6 O -0.59 -29.47 16.04 2.68 0.04 -29.43 16 7 N -0.70 -23.82 4.36 -445.91 -1.94 -25.77 16 8 C 0.14 5.82 2.06 45.07 0.09 5.91 16 9 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 10 C 0.18 9.25 4.88 86.36 0.42 9.67 16 11 N -0.61 -32.22 3.00 -699.09 -2.09 -34.31 16 12 C -0.27 -15.55 9.60 84.03 0.81 -14.74 16 13 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 14 C -0.05 -2.91 4.94 84.86 0.42 -2.49 16 15 N -0.93 -58.46 11.11 21.65 0.24 -58.22 16 16 Si 0.96 48.14 29.58 68.60 2.03 50.17 16 17 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 18 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 C 0.14 5.62 6.51 86.37 0.56 6.18 16 21 C -0.12 -3.73 5.36 30.67 0.16 -3.57 16 22 C -0.08 -2.58 2.27 -10.77 -0.02 -2.60 16 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 24 C -0.13 -3.15 9.02 71.98 0.65 -2.50 16 25 C 0.10 2.42 11.50 85.71 0.99 3.41 16 26 N -0.29 -6.87 12.48 -56.22 -0.70 -7.57 16 27 N -0.37 -8.46 3.99 -479.80 -1.91 -10.37 16 28 C 0.08 1.03 11.38 127.77 1.45 2.48 16 29 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.41 10.23 7.25 -92.71 -0.67 9.56 16 33 H 0.04 2.77 5.99 -2.39 -0.01 2.75 16 34 H 0.00 -0.03 8.14 -2.38 -0.02 -0.04 16 35 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 2.21 7.94 -2.39 -0.02 2.19 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.34 7.36 -2.39 -0.02 1.32 16 43 H 0.23 3.29 7.50 -2.91 -0.02 3.27 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -84.57 376.91 3.12 -81.45 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.31 Total: 17.24 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 7.93 Total: 27.30 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -6.41 Total: -136.25 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.74 Total: -39.92 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -84.57 3.12 -81.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968593349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.400 kcal (2) G-P(sol) polarization free energy of solvation -84.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds