Wall clock time and date at job start Tue Mar 31 2020 14:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35360 * 116.99796 * 2 1 4 4 C 1.38992 * 126.40285 * 88.02242 * 3 2 1 5 5 C 1.46921 * 126.50027 * 0.03623 * 4 3 2 6 6 O 1.21668 * 119.99957 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00142 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00410 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.49634 * 324.93592 * 8 7 5 10 10 C 1.53190 * 109.49645 * 84.99398 * 8 7 5 11 11 N 1.46924 * 108.77654 * 65.32051 * 10 8 7 12 12 C 1.36938 * 120.63503 * 233.58353 * 11 10 8 13 13 H 1.07991 * 120.00044 * 150.10386 * 12 11 10 14 14 C 1.38811 * 119.99710 * 330.11055 * 12 11 10 15 15 N 1.31626 * 120.00343 * 344.35839 * 14 12 11 16 16 Si 1.86802 * 120.00232 * 164.36702 * 14 12 11 17 17 H 1.48499 * 109.47336 * 89.99139 * 16 14 12 18 18 H 1.48493 * 109.47268 * 210.00104 * 16 14 12 19 19 H 1.48504 * 109.46566 * 329.99355 * 16 14 12 20 20 C 1.46933 * 118.73681 * 53.60676 * 11 10 8 21 21 C 1.53187 * 108.77238 * 306.39182 * 20 11 10 22 22 C 1.53035 * 109.31495 * 54.63922 * 21 20 11 23 23 H 1.08994 * 109.46346 * 58.65209 * 22 21 20 24 24 C 1.52998 * 109.46246 * 178.61146 * 22 21 20 25 25 C 1.41463 * 107.00201 * 180.29415 * 4 3 2 26 26 N 1.30311 * 108.13948 * 359.55375 * 25 4 3 27 27 N 1.34659 * 126.40153 * 268.05918 * 3 2 1 28 28 C 1.46500 * 125.74741 * 359.97150 * 27 3 2 29 29 H 1.09010 * 109.47151 * 55.32369 * 1 2 3 30 30 H 1.08993 * 109.47051 * 175.32418 * 1 2 3 31 31 H 1.08997 * 109.47562 * 295.33284 * 1 2 3 32 32 H 0.97005 * 120.00364 * 359.97438 * 7 5 4 33 33 H 1.08997 * 109.59064 * 305.53159 * 10 8 7 34 34 H 1.09002 * 109.58766 * 185.10901 * 10 8 7 35 35 H 0.96993 * 120.00006 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.58049 * 186.60470 * 20 11 10 37 37 H 1.09003 * 109.70194 * 66.25431 * 20 11 10 38 38 H 1.09011 * 109.49500 * 174.58708 * 21 20 11 39 39 H 1.09001 * 109.49928 * 294.68113 * 21 20 11 40 40 H 1.09001 * 109.46941 * 59.99523 * 24 22 21 41 41 H 1.08997 * 109.47558 * 179.97438 * 24 22 21 42 42 H 1.08999 * 109.47247 * 300.00205 * 24 22 21 43 43 H 1.08004 * 125.93033 * 179.73722 * 25 4 3 44 44 H 1.08997 * 109.47092 * 94.40986 * 28 27 3 45 45 H 1.08998 * 109.46721 * 214.41626 * 28 27 3 46 46 H 1.09001 * 109.46920 * 334.41071 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 6 2.3835 1.9586 1.1180 5 6 2.1449 1.5954 2.5215 6 8 1.5984 0.5428 2.7930 7 7 2.5305 2.4286 3.5081 8 6 2.2921 2.0667 4.9076 9 1 1.3502 1.5240 4.9876 10 6 3.4368 1.1807 5.4087 11 7 4.6767 1.9689 5.4158 12 6 5.7955 1.5155 4.7693 13 1 6.5032 2.2192 4.3568 14 6 6.0198 0.1513 4.6442 15 7 5.3471 -0.6976 5.3920 16 14 7.2766 -0.4797 3.4147 17 1 8.6062 -0.5729 4.0694 18 1 6.8666 -1.8232 2.9331 19 1 7.3560 0.4555 2.2639 20 6 4.6936 3.2527 6.1301 21 6 3.5347 4.1155 5.6209 22 6 2.2248 3.3365 5.7592 23 1 2.0721 3.0654 6.8038 24 6 1.0607 4.2080 5.2837 25 6 2.9975 3.1433 0.6482 26 7 3.0297 3.0947 -0.6536 27 7 2.4389 1.9015 -1.0832 28 6 2.2777 1.4796 -2.4769 29 1 -0.3634 0.5847 -0.8452 30 1 -0.3633 -1.0242 -0.0838 31 1 -0.3634 0.4397 0.9288 32 1 2.9659 3.2680 3.2917 33 1 3.5527 0.3234 4.7456 34 1 3.2170 0.8363 6.4193 35 1 5.5036 -1.6508 5.3043 36 1 5.6386 3.7626 5.9429 37 1 4.5776 3.0795 7.2000 38 1 3.4772 5.0314 6.2092 39 1 3.7005 4.3655 4.5729 40 1 1.2134 4.4798 4.2392 41 1 0.1277 3.6532 5.3817 42 1 1.0119 5.1119 5.8909 43 1 3.3766 3.9470 1.2620 44 1 1.3599 1.9061 -2.8817 45 1 3.1290 1.8268 -3.0623 46 1 2.2242 0.3919 -2.5233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968593350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:44 Heat of formation + Delta-G solvation = 7.702663 kcal Electronic energy + Delta-G solvation = -29227.581149 eV Core-core repulsion = 25347.406230 eV Total energy + Delta-G solvation = -3880.174919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.60416 -40.74458 -39.21530 -38.78252 -35.84888 -34.57170 -34.00271 -32.77750 -31.33616 -30.48000 -28.94249 -28.26282 -27.69011 -25.80568 -24.31112 -23.38074 -22.67079 -22.12737 -21.34461 -20.19052 -19.40209 -18.57603 -17.91919 -17.49351 -16.97465 -16.75276 -16.26759 -15.84244 -15.74405 -15.64057 -15.47006 -15.13830 -14.80100 -14.75160 -14.57248 -14.46528 -14.04723 -13.60789 -13.56311 -13.49001 -13.07784 -12.96202 -12.90318 -12.70043 -12.56754 -12.46015 -12.37103 -12.23861 -11.92194 -11.49917 -11.36119 -11.20553 -11.00013 -10.77859 -10.51042 -10.48785 -9.96475 -9.59195 -8.57152 -7.83426 -5.29550 0.17110 1.07354 1.11052 1.37919 1.42464 1.48657 2.30386 2.49097 2.57719 2.67957 3.33057 3.41120 3.74458 3.93048 4.00819 4.02725 4.06824 4.16353 4.20036 4.31946 4.35470 4.37455 4.58105 4.59410 4.62238 4.66986 4.74022 4.78549 4.91196 4.99617 5.02141 5.07955 5.16886 5.23069 5.30947 5.33008 5.37064 5.53569 5.58865 5.65102 5.77051 5.84966 6.25234 6.39719 6.43683 6.84339 7.18647 7.52527 7.92142 8.43080 9.21124 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.005676 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.770776 B = 4931.690891 C = 6235.592922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.319 6.319 3 C 0.310 3.690 4 C -0.320 4.320 5 C 0.587 3.413 6 O -0.591 6.591 7 N -0.683 5.683 8 C 0.141 3.859 9 H 0.062 0.938 10 C 0.173 3.827 11 N -0.599 5.599 12 C -0.244 4.244 13 H 0.069 0.931 14 C -0.050 4.050 15 N -0.934 5.934 16 Si 0.950 3.050 17 H -0.279 1.279 18 H -0.305 1.305 19 H -0.272 1.272 20 C 0.135 3.865 21 C -0.116 4.116 22 C -0.087 4.087 23 H 0.075 0.925 24 C -0.134 4.134 25 C 0.100 3.900 26 N -0.290 5.290 27 N -0.365 5.365 28 C 0.084 3.916 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.042 0.958 32 H 0.404 0.596 33 H 0.043 0.957 34 H -0.005 1.005 35 H 0.243 0.757 36 H 0.057 0.943 37 H 0.012 0.988 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.220 0.780 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 11.707 -12.352 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.229 6.229 3 C 0.135 3.865 4 C -0.336 4.336 5 C 0.375 3.625 6 O -0.474 6.474 7 N -0.333 5.333 8 C 0.034 3.966 9 H 0.080 0.920 10 C 0.046 3.954 11 N -0.322 5.322 12 C -0.375 4.375 13 H 0.087 0.913 14 C -0.245 4.245 15 N -0.580 5.580 16 Si 0.779 3.221 17 H -0.205 1.205 18 H -0.232 1.232 19 H -0.197 1.197 20 C 0.011 3.989 21 C -0.155 4.155 22 C -0.106 4.106 23 H 0.093 0.907 24 C -0.191 4.191 25 C -0.086 4.086 26 N -0.112 5.112 27 N -0.155 5.155 28 C -0.055 4.055 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.061 0.939 32 H 0.241 0.759 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.237 0.763 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.632 11.135 -13.331 20.905 hybrid contribution 0.732 -1.370 0.385 1.600 sum -10.901 9.765 -12.946 19.539 Atomic orbital electron populations 1.23297 0.74856 1.05691 1.01581 1.85947 1.23298 1.20589 1.93055 1.19418 0.95060 0.84955 0.87079 1.20217 1.19970 1.00439 0.92972 1.17279 0.77666 0.83011 0.84513 1.90731 1.46492 1.25268 1.84863 1.45398 1.60282 1.22552 1.05071 1.21432 0.97397 0.96956 0.80800 0.91973 1.20841 0.85047 0.93371 0.96139 1.44137 1.07770 1.20365 1.59941 1.19383 1.00745 0.90068 1.27319 0.91318 1.25715 1.00631 0.97549 1.00598 1.70154 1.45868 1.01242 1.40770 0.85533 0.79538 0.77033 0.79998 1.20522 1.23239 1.19652 1.21157 0.97780 0.86380 0.93628 1.21964 0.93524 0.98174 1.01800 1.21263 0.96659 0.93781 0.98876 0.90680 1.21752 0.96269 0.99422 1.01687 1.24260 0.95493 0.96976 0.91896 1.77133 1.20595 1.00124 1.13395 1.49211 1.44864 1.13906 1.07490 1.22369 1.05682 1.02392 0.75079 0.90795 0.85834 0.93898 0.75876 0.93885 0.98682 0.94751 0.92440 0.97040 0.89004 0.91685 0.92330 0.93309 0.90542 0.76321 0.87780 0.87472 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 11.13 113.37 1.26 2.16 16 2 O -0.32 -10.26 9.74 -79.57 -0.78 -11.03 16 3 C 0.31 10.03 6.98 84.44 0.59 10.62 16 4 C -0.32 -11.19 6.15 -20.03 -0.12 -11.32 16 5 C 0.59 24.04 7.76 86.52 0.67 24.71 16 6 O -0.59 -28.92 16.00 2.69 0.04 -28.87 16 7 N -0.68 -24.75 4.25 -445.91 -1.89 -26.65 16 8 C 0.14 5.46 2.24 45.07 0.10 5.56 16 9 H 0.06 2.57 7.58 -2.39 -0.02 2.55 16 10 C 0.17 8.80 4.88 86.36 0.42 9.22 16 11 N -0.60 -29.59 2.90 -699.10 -2.03 -31.62 16 12 C -0.24 -13.56 9.57 84.03 0.80 -12.76 16 13 H 0.07 3.66 7.88 -2.92 -0.02 3.64 16 14 C -0.05 -2.93 4.93 84.86 0.42 -2.51 16 15 N -0.93 -59.31 11.25 21.65 0.24 -59.06 16 16 Si 0.95 48.23 29.58 68.60 2.03 50.26 16 17 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.31 -16.11 7.11 99.48 0.71 -15.41 16 19 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 20 C 0.14 5.22 6.52 86.36 0.56 5.78 16 21 C -0.12 -3.24 5.19 30.67 0.16 -3.08 16 22 C -0.09 -2.53 2.48 -10.77 -0.03 -2.55 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 C -0.13 -2.94 9.05 71.98 0.65 -2.29 16 25 C 0.10 2.82 11.50 85.71 0.99 3.80 16 26 N -0.29 -8.04 12.48 -56.23 -0.70 -8.74 16 27 N -0.37 -9.57 3.99 -479.80 -1.91 -11.49 16 28 C 0.08 1.27 11.41 127.77 1.46 2.72 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.40 12.37 5.58 -92.70 -0.52 11.85 16 33 H 0.04 2.64 6.16 -2.39 -0.01 2.63 16 34 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 37 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.06 1.72 6.40 -2.39 -0.02 1.70 16 40 H 0.06 1.23 7.54 -2.39 -0.02 1.21 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.22 4.54 7.50 -2.91 -0.02 4.52 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 Total: -1.00 -81.72 373.71 3.41 -78.32 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.47 Total: 18.80 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 7.93 Total: 30.08 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -6.30 Total: -137.56 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.73 Total: -39.91 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -81.72 3.41 -78.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968593350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.021 kcal (2) G-P(sol) polarization free energy of solvation -81.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds