Wall clock time and date at job start Tue Mar 31 2020 14:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35354 * 116.99687 * 2 1 4 4 C 1.38996 * 126.40545 * 263.34225 * 3 2 1 5 5 C 1.46921 * 126.49783 * 0.02562 * 4 3 2 6 6 O 1.21665 * 119.99635 * 359.70408 * 5 4 3 7 7 N 1.34772 * 119.99857 * 179.71232 * 5 4 3 8 8 C 1.46504 * 119.99815 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.49928 * 35.06484 * 8 7 5 10 10 C 1.53190 * 109.49489 * 274.99468 * 8 7 5 11 11 N 1.46927 * 108.77323 * 185.41424 * 10 8 7 12 12 C 1.36943 * 120.63087 * 233.59190 * 11 10 8 13 13 H 1.07996 * 120.00025 * 145.19390 * 12 11 10 14 14 C 1.38811 * 119.99661 * 325.18667 * 12 11 10 15 15 N 1.31618 * 120.00321 * 346.18289 * 14 12 11 16 16 Si 1.86804 * 119.99994 * 166.17713 * 14 12 11 17 17 H 1.48505 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47091 * 119.99946 * 16 14 12 19 19 H 1.48494 * 109.47509 * 240.00279 * 16 14 12 20 20 C 1.46926 * 118.73993 * 53.60957 * 11 10 8 21 21 C 1.53183 * 108.89234 * 306.32303 * 20 11 10 22 22 C 1.53040 * 109.49785 * 155.16119 * 8 7 5 23 23 H 1.09000 * 109.46138 * 61.30183 * 22 8 7 24 24 C 1.53006 * 109.45825 * 301.33576 * 22 8 7 25 25 C 1.41466 * 107.00197 * 179.74956 * 4 3 2 26 26 N 1.30311 * 108.14019 * 0.22584 * 25 4 3 27 27 N 1.34657 * 126.40246 * 83.47893 * 3 2 1 28 28 C 1.46504 * 125.74567 * 0.02600 * 27 3 2 29 29 H 1.08998 * 109.46682 * 174.99637 * 1 2 3 30 30 H 1.08996 * 109.47149 * 294.99517 * 1 2 3 31 31 H 1.08999 * 109.46747 * 55.00401 * 1 2 3 32 32 H 0.97003 * 120.00232 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.58821 * 65.63208 * 10 8 7 34 34 H 1.08996 * 109.58974 * 305.20445 * 10 8 7 35 35 H 0.97007 * 120.00075 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.58285 * 66.18438 * 20 11 10 37 37 H 1.09001 * 109.58791 * 186.46117 * 20 11 10 38 38 H 1.09002 * 109.49669 * 174.65925 * 21 20 11 39 39 H 1.09006 * 109.49756 * 294.74921 * 21 20 11 40 40 H 1.09004 * 109.47215 * 60.00196 * 24 22 8 41 41 H 1.09001 * 109.47160 * 179.97438 * 24 22 8 42 42 H 1.08993 * 109.47208 * 300.00051 * 24 22 8 43 43 H 1.08000 * 125.92804 * 180.19189 * 25 4 3 44 44 H 1.08999 * 109.46785 * 275.46346 * 28 27 3 45 45 H 1.08997 * 109.47414 * 35.45851 * 28 27 3 46 46 H 1.08998 * 109.47430 * 155.46363 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5336 1.8822 -1.1111 5 6 2.4821 1.4237 -2.5060 6 8 1.9762 0.3505 -2.7752 7 7 2.9954 2.1918 -3.4872 8 6 2.9446 1.7344 -4.8781 9 1 2.0215 1.1794 -5.0450 10 6 4.1456 0.8267 -5.1619 11 7 4.1512 0.4828 -6.5903 12 6 4.1985 -0.8253 -6.9929 13 1 3.6714 -1.1358 -7.8829 14 6 4.9241 -1.7520 -6.2570 15 7 5.7788 -1.3432 -5.3434 16 14 4.6874 -3.5795 -6.5633 17 1 3.6776 -3.7752 -7.6345 18 1 5.9777 -4.1821 -6.9841 19 1 4.2190 -4.2341 -5.3154 20 6 4.1055 1.5690 -7.5787 21 6 2.9048 2.4691 -7.2712 22 6 2.9912 2.9432 -5.8154 23 1 3.9257 3.4836 -5.6650 24 6 1.8121 3.8697 -5.5113 25 6 3.0855 3.0985 -0.6450 26 7 2.9393 3.1408 0.6492 27 7 2.2966 1.9740 1.0768 28 6 1.9521 1.6454 2.4623 29 1 -0.3632 -1.0238 -0.0896 30 1 -0.3633 0.4342 0.9314 31 1 -0.3633 0.5894 -0.8419 32 1 3.3986 3.0476 -3.2726 33 1 4.0644 -0.0833 -4.5673 34 1 5.0673 1.3503 -4.9084 35 1 6.2856 -1.9909 -4.8289 36 1 5.0241 2.1530 -7.5224 37 1 4.0005 1.1487 -8.5789 38 1 2.9154 3.3305 -7.9391 39 1 1.9821 1.9071 -7.4163 40 1 1.8739 4.2090 -4.4773 41 1 1.8453 4.7310 -6.1786 42 1 0.8774 3.3294 -5.6612 43 1 3.5482 3.8596 -1.2557 44 1 0.9216 1.9405 2.6602 45 1 2.0590 0.5720 2.6186 46 1 2.6192 2.1794 3.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968593351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:49 Heat of formation + Delta-G solvation = 29.526378 kcal Electronic energy + Delta-G solvation = -28490.430858 eV Core-core repulsion = 24611.202286 eV Total energy + Delta-G solvation = -3879.228572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59137 -39.14539 -38.19344 -37.28643 -34.19286 -33.55552 -32.85983 -30.90431 -30.11908 -28.91499 -27.56288 -27.04773 -26.80663 -24.00438 -23.09619 -21.80989 -21.14730 -20.79984 -19.83925 -19.34243 -18.17686 -16.70365 -16.68567 -16.48768 -15.88020 -15.16339 -14.82068 -14.76610 -14.65660 -14.07712 -13.78964 -13.75054 -13.65719 -13.41153 -13.25563 -12.98493 -12.89918 -12.72861 -12.32891 -12.06024 -11.90104 -11.55544 -11.52217 -11.42873 -10.82813 -10.67902 -10.52986 -10.39023 -10.35368 -10.06712 -9.92269 -9.79833 -9.57563 -9.39159 -9.25185 -8.69579 -8.37793 -8.29544 -6.47394 -5.68271 -3.18890 1.21794 1.98882 2.14893 3.38386 3.46424 3.54194 3.55871 3.70189 3.90252 4.29501 4.60274 4.78722 4.82529 4.87518 5.07628 5.10891 5.12231 5.24125 5.29308 5.33840 5.44006 5.48035 5.56803 5.64958 5.75524 5.95164 5.99167 6.08898 6.11818 6.19649 6.26673 6.34232 6.48602 6.54053 6.63805 6.83043 6.86107 7.06158 7.10805 7.25909 7.36239 7.40325 7.80167 7.92113 8.12252 8.60419 8.86557 9.32089 9.93832 10.53104 11.39365 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.004234 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.476993 B = 6611.145655 C = 8035.672506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.293 6.293 3 C 0.316 3.684 4 C -0.284 4.284 5 C 0.589 3.411 6 O -0.531 6.531 7 N -0.715 5.715 8 C 0.128 3.872 9 H 0.081 0.919 10 C 0.171 3.829 11 N -0.587 5.587 12 C -0.260 4.260 13 H 0.062 0.938 14 C 0.013 3.987 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.288 1.288 20 C 0.142 3.858 21 C -0.125 4.125 22 C -0.092 4.092 23 H 0.067 0.933 24 C -0.143 4.143 25 C 0.090 3.910 26 N -0.283 5.283 27 N -0.375 5.375 28 C 0.095 3.905 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.389 0.611 33 H 0.084 0.916 34 H 0.018 0.982 35 H 0.253 0.747 36 H 0.017 0.983 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.195 0.805 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 11.640 12.648 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.201 6.201 3 C 0.143 3.857 4 C -0.300 4.300 5 C 0.375 3.625 6 O -0.408 6.408 7 N -0.365 5.365 8 C 0.023 3.977 9 H 0.100 0.900 10 C 0.044 3.956 11 N -0.310 5.310 12 C -0.390 4.390 13 H 0.080 0.920 14 C -0.187 4.187 15 N -0.539 5.539 16 Si 0.729 3.271 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.214 1.214 20 C 0.016 3.984 21 C -0.165 4.165 22 C -0.111 4.111 23 H 0.085 0.915 24 C -0.201 4.201 25 C -0.097 4.097 26 N -0.106 5.106 27 N -0.165 5.165 28 C -0.046 4.046 29 H 0.125 0.875 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.222 0.778 33 H 0.102 0.898 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.211 0.789 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.942 11.100 13.693 20.238 hybrid contribution -0.064 -0.883 -0.441 0.989 sum -10.007 10.217 13.252 19.497 Atomic orbital electron populations 1.23110 0.76998 1.04684 1.00665 1.86078 1.21123 1.20164 1.92745 1.19354 0.95426 0.84480 0.86404 1.20225 1.17420 0.98365 0.93994 1.16899 0.78449 0.84113 0.83065 1.90840 1.45353 1.21274 1.83320 1.45797 1.61047 1.22202 1.07486 1.21937 1.02999 0.95150 0.77645 0.90049 1.21014 0.91236 0.97377 0.85970 1.43889 1.85769 1.01541 0.99774 1.19104 1.24771 0.83915 1.11190 0.92006 1.25206 0.95553 0.98562 0.99341 1.70007 1.25275 1.32853 1.25719 0.86272 0.77349 0.85699 0.77731 1.20128 1.21718 1.21426 1.20965 0.93778 0.89972 0.93690 1.22121 1.01092 0.99086 0.94186 1.21352 0.98141 0.95502 0.96107 0.91482 1.21844 0.98679 0.98957 1.00599 1.23910 0.97281 0.96532 0.91927 1.77166 1.18323 1.01548 1.13536 1.48917 1.45921 1.14536 1.07136 1.21956 1.01963 1.02755 0.77951 0.87541 0.93777 0.92224 0.77760 0.89760 0.96357 0.93717 0.96503 0.92722 0.92687 0.92202 0.93181 0.93242 0.93026 0.78878 0.90619 0.89156 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.13 101.05 1.12 1.56 16 2 O -0.29 -4.41 9.83 -25.01 -0.25 -4.65 16 3 C 0.32 4.72 6.99 -16.03 -0.11 4.61 16 4 C -0.28 -4.48 6.15 -104.87 -0.64 -5.12 16 5 C 0.59 11.08 7.76 -12.75 -0.10 10.98 16 6 O -0.53 -12.36 16.05 -2.04 -0.03 -12.39 16 7 N -0.72 -12.00 4.36 -54.92 -0.24 -12.24 16 8 C 0.13 2.52 2.07 -67.81 -0.14 2.38 16 9 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 10 C 0.17 4.25 4.83 -3.71 -0.02 4.23 16 11 N -0.59 -15.19 2.96 -172.32 -0.51 -15.70 16 12 C -0.26 -7.45 9.52 -15.06 -0.14 -7.59 16 13 H 0.06 1.74 7.87 -52.49 -0.41 1.33 16 14 C 0.01 0.39 4.95 -17.43 -0.09 0.31 16 15 N -0.90 -27.37 11.52 55.49 0.64 -26.73 16 16 Si 0.90 22.89 29.58 -169.99 -5.03 17.86 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 C 0.14 3.01 6.50 -3.72 -0.02 2.98 16 21 C -0.13 -2.14 5.39 -26.46 -0.14 -2.28 16 22 C -0.09 -1.48 2.27 -90.42 -0.21 -1.68 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 24 C -0.14 -1.87 9.02 37.16 0.34 -1.53 16 25 C 0.09 1.13 11.50 -16.97 -0.20 0.94 16 26 N -0.28 -3.66 12.47 30.88 0.39 -3.28 16 27 N -0.37 -4.63 3.99 -67.67 -0.27 -4.90 16 28 C 0.09 0.71 11.38 59.85 0.68 1.39 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.39 5.12 7.25 -40.82 -0.30 4.82 16 33 H 0.08 2.49 6.49 -51.93 -0.34 2.15 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.59 7.36 -51.93 -0.38 0.20 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.19 1.69 7.50 -52.49 -0.39 1.29 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -36.76 377.65 -6.54 -43.30 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.26 Total: 1.85 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 0.33 Total: 11.17 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: 0.01 Total: -62.83 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.28 Total: -17.04 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.76 -6.54 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968593351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.822 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds