Wall clock time and date at job start Tue Mar 31 2020 14:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35354 * 116.99687 * 2 1 4 4 C 1.38996 * 126.40545 * 263.34225 * 3 2 1 5 5 C 1.46921 * 126.49783 * 0.02562 * 4 3 2 6 6 O 1.21665 * 119.99635 * 359.70408 * 5 4 3 7 7 N 1.34772 * 119.99857 * 179.71232 * 5 4 3 8 8 C 1.46504 * 119.99815 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.49928 * 35.06484 * 8 7 5 10 10 C 1.53190 * 109.49489 * 274.99468 * 8 7 5 11 11 N 1.46927 * 108.77323 * 185.41424 * 10 8 7 12 12 C 1.36943 * 120.63087 * 233.59190 * 11 10 8 13 13 H 1.07996 * 120.00025 * 145.19390 * 12 11 10 14 14 C 1.38811 * 119.99661 * 325.18667 * 12 11 10 15 15 N 1.31618 * 120.00321 * 346.18289 * 14 12 11 16 16 Si 1.86804 * 119.99994 * 166.17713 * 14 12 11 17 17 H 1.48505 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47091 * 119.99946 * 16 14 12 19 19 H 1.48494 * 109.47509 * 240.00279 * 16 14 12 20 20 C 1.46926 * 118.73993 * 53.60957 * 11 10 8 21 21 C 1.53183 * 108.89234 * 306.32303 * 20 11 10 22 22 C 1.53040 * 109.49785 * 155.16119 * 8 7 5 23 23 H 1.09000 * 109.46138 * 61.30183 * 22 8 7 24 24 C 1.53006 * 109.45825 * 301.33576 * 22 8 7 25 25 C 1.41466 * 107.00197 * 179.74956 * 4 3 2 26 26 N 1.30311 * 108.14019 * 0.22584 * 25 4 3 27 27 N 1.34657 * 126.40246 * 83.47893 * 3 2 1 28 28 C 1.46504 * 125.74567 * 0.02600 * 27 3 2 29 29 H 1.08998 * 109.46682 * 174.99637 * 1 2 3 30 30 H 1.08996 * 109.47149 * 294.99517 * 1 2 3 31 31 H 1.08999 * 109.46747 * 55.00401 * 1 2 3 32 32 H 0.97003 * 120.00232 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.58821 * 65.63208 * 10 8 7 34 34 H 1.08996 * 109.58974 * 305.20445 * 10 8 7 35 35 H 0.97007 * 120.00075 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.58285 * 66.18438 * 20 11 10 37 37 H 1.09001 * 109.58791 * 186.46117 * 20 11 10 38 38 H 1.09002 * 109.49669 * 174.65925 * 21 20 11 39 39 H 1.09006 * 109.49756 * 294.74921 * 21 20 11 40 40 H 1.09004 * 109.47215 * 60.00196 * 24 22 8 41 41 H 1.09001 * 109.47160 * 179.97438 * 24 22 8 42 42 H 1.08993 * 109.47208 * 300.00051 * 24 22 8 43 43 H 1.08000 * 125.92804 * 180.19189 * 25 4 3 44 44 H 1.08999 * 109.46785 * 275.46346 * 28 27 3 45 45 H 1.08997 * 109.47414 * 35.45851 * 28 27 3 46 46 H 1.08998 * 109.47430 * 155.46363 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5336 1.8822 -1.1111 5 6 2.4821 1.4237 -2.5060 6 8 1.9762 0.3505 -2.7752 7 7 2.9954 2.1918 -3.4872 8 6 2.9446 1.7344 -4.8781 9 1 2.0215 1.1794 -5.0450 10 6 4.1456 0.8267 -5.1619 11 7 4.1512 0.4828 -6.5903 12 6 4.1985 -0.8253 -6.9929 13 1 3.6714 -1.1358 -7.8829 14 6 4.9241 -1.7520 -6.2570 15 7 5.7788 -1.3432 -5.3434 16 14 4.6874 -3.5795 -6.5633 17 1 3.6776 -3.7752 -7.6345 18 1 5.9777 -4.1821 -6.9841 19 1 4.2190 -4.2341 -5.3154 20 6 4.1055 1.5690 -7.5787 21 6 2.9048 2.4691 -7.2712 22 6 2.9912 2.9432 -5.8154 23 1 3.9257 3.4836 -5.6650 24 6 1.8121 3.8697 -5.5113 25 6 3.0855 3.0985 -0.6450 26 7 2.9393 3.1408 0.6492 27 7 2.2966 1.9740 1.0768 28 6 1.9521 1.6454 2.4623 29 1 -0.3632 -1.0238 -0.0896 30 1 -0.3633 0.4342 0.9314 31 1 -0.3633 0.5894 -0.8419 32 1 3.3986 3.0476 -3.2726 33 1 4.0644 -0.0833 -4.5673 34 1 5.0673 1.3503 -4.9084 35 1 6.2856 -1.9909 -4.8289 36 1 5.0241 2.1530 -7.5224 37 1 4.0005 1.1487 -8.5789 38 1 2.9154 3.3305 -7.9391 39 1 1.9821 1.9071 -7.4163 40 1 1.8739 4.2090 -4.4773 41 1 1.8453 4.7310 -6.1786 42 1 0.8774 3.3294 -5.6612 43 1 3.5482 3.8596 -1.2557 44 1 0.9216 1.9405 2.6602 45 1 2.0590 0.5720 2.6186 46 1 2.6192 2.1794 3.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968593351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:48 Heat of formation + Delta-G solvation = 2.054366 kcal Electronic energy + Delta-G solvation = -28491.622134 eV Core-core repulsion = 24611.202286 eV Total energy + Delta-G solvation = -3880.419848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.63127 -40.66761 -39.23467 -38.89795 -36.00106 -34.72813 -34.22942 -32.80508 -31.32654 -30.34911 -28.99587 -28.27078 -27.69264 -25.85966 -24.50375 -23.15614 -22.62420 -22.01202 -21.30887 -20.81827 -19.30165 -18.71249 -17.88123 -17.51400 -17.22625 -16.77558 -16.35718 -15.83728 -15.76717 -15.64001 -15.43736 -15.19390 -14.89462 -14.82871 -14.67282 -14.33322 -14.06938 -13.61817 -13.59176 -13.47295 -13.21122 -13.01918 -12.93937 -12.76880 -12.58129 -12.47181 -12.31720 -12.11435 -11.89896 -11.58046 -11.44311 -11.28455 -11.13202 -10.79214 -10.57992 -10.49987 -10.06681 -9.67334 -8.58670 -7.88349 -5.42494 0.13586 1.06655 1.09095 1.39506 1.43769 1.52796 2.23020 2.43627 2.50394 2.60573 3.27855 3.38151 3.78929 3.86740 3.96136 4.02410 4.05801 4.14866 4.21783 4.26101 4.31346 4.36237 4.53421 4.56038 4.59795 4.63036 4.69199 4.74087 4.78713 4.98008 5.03477 5.04425 5.17595 5.23229 5.26935 5.32155 5.37797 5.51044 5.52417 5.57169 5.64449 5.82489 6.25324 6.37131 6.40992 6.76699 7.14441 7.45884 7.85413 8.38155 9.15589 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.004234 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.476993 B = 6611.145655 C = 8035.672506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.311 3.689 4 C -0.319 4.319 5 C 0.586 3.414 6 O -0.588 6.588 7 N -0.700 5.700 8 C 0.145 3.855 9 H 0.049 0.951 10 C 0.185 3.815 11 N -0.608 5.608 12 C -0.268 4.268 13 H 0.063 0.937 14 C -0.044 4.044 15 N -0.930 5.930 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.283 1.283 19 H -0.298 1.298 20 C 0.136 3.864 21 C -0.115 4.115 22 C -0.084 4.084 23 H 0.081 0.919 24 C -0.134 4.134 25 C 0.104 3.896 26 N -0.289 5.289 27 N -0.367 5.367 28 C 0.082 3.918 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.411 0.589 33 H 0.027 0.973 34 H 0.000 1.000 35 H 0.247 0.753 36 H 0.020 0.980 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.230 0.770 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 14.218 13.268 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.136 3.864 4 C -0.335 4.335 5 C 0.374 3.626 6 O -0.469 6.469 7 N -0.351 5.351 8 C 0.039 3.961 9 H 0.067 0.933 10 C 0.058 3.942 11 N -0.332 5.332 12 C -0.399 4.399 13 H 0.081 0.919 14 C -0.240 4.240 15 N -0.574 5.574 16 Si 0.788 3.212 17 H -0.185 1.185 18 H -0.210 1.210 19 H -0.225 1.225 20 C 0.011 3.989 21 C -0.154 4.154 22 C -0.104 4.104 23 H 0.099 0.901 24 C -0.191 4.191 25 C -0.083 4.083 26 N -0.112 5.112 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.136 0.864 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.247 0.753 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.246 0.754 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.974 13.752 14.324 22.688 hybrid contribution 0.236 -1.692 -0.574 1.802 sum -10.738 12.060 13.750 21.209 Atomic orbital electron populations 1.23323 0.74972 1.05604 1.01867 1.86013 1.23223 1.20689 1.92980 1.19511 0.95196 0.84426 0.87274 1.20084 1.20305 1.00558 0.92531 1.17407 0.77321 0.83311 0.84532 1.90801 1.47959 1.23764 1.84349 1.45552 1.60656 1.22775 1.06154 1.21440 0.98559 0.96016 0.80107 0.93291 1.20693 0.92695 0.95680 0.85109 1.44172 1.86148 1.01988 1.00935 1.19450 1.23843 0.85690 1.10904 0.91917 1.25967 0.95764 1.02642 0.99626 1.70157 1.26580 1.33717 1.26975 0.85314 0.77716 0.80792 0.77351 1.18544 1.20955 1.22538 1.21175 0.95871 0.89341 0.92493 1.22021 0.98230 0.99492 0.95702 1.21317 1.00585 0.94215 0.94238 0.90077 1.21764 0.96235 0.98768 1.02368 1.24373 0.96166 0.95818 0.91941 1.77152 1.18510 1.01923 1.13574 1.49245 1.44635 1.13634 1.08099 1.22392 1.03923 1.03701 0.75643 0.86392 0.90184 0.93791 0.75253 0.95418 0.98175 0.94393 0.96185 0.92821 0.88479 0.93220 0.91629 0.90343 0.93999 0.75416 0.88036 0.88379 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 11.13 113.37 1.26 2.03 16 2 O -0.32 -9.79 9.83 -79.50 -0.78 -10.57 16 3 C 0.31 9.22 6.99 84.44 0.59 9.81 16 4 C -0.32 -10.03 6.15 -20.03 -0.12 -10.15 16 5 C 0.59 22.83 7.76 86.52 0.67 23.50 16 6 O -0.59 -29.15 16.05 2.70 0.04 -29.10 16 7 N -0.70 -23.59 4.36 -445.91 -1.95 -25.54 16 8 C 0.15 5.81 2.07 45.07 0.09 5.91 16 9 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 10 C 0.19 9.65 4.83 86.36 0.42 10.07 16 11 N -0.61 -32.45 2.96 -699.11 -2.07 -34.52 16 12 C -0.27 -15.88 9.52 84.03 0.80 -15.08 16 13 H 0.06 3.61 7.87 -2.91 -0.02 3.59 16 14 C -0.04 -2.64 4.95 84.86 0.42 -2.22 16 15 N -0.93 -59.56 11.52 21.65 0.25 -59.31 16 16 Si 0.96 48.71 29.58 68.60 2.03 50.74 16 17 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 20 C 0.14 5.69 6.50 86.36 0.56 6.25 16 21 C -0.12 -3.68 5.39 30.77 0.17 -3.52 16 22 C -0.08 -2.54 2.27 -10.66 -0.02 -2.56 16 23 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 24 C -0.13 -3.01 9.02 71.98 0.65 -2.36 16 25 C 0.10 2.41 11.50 85.71 0.99 3.40 16 26 N -0.29 -6.86 12.47 -56.23 -0.70 -7.56 16 27 N -0.37 -8.43 3.99 -479.80 -1.91 -10.35 16 28 C 0.08 1.03 11.38 127.77 1.45 2.48 16 29 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.41 10.13 7.25 -92.71 -0.67 9.45 16 33 H 0.03 1.73 6.49 -2.38 -0.02 1.72 16 34 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.06 1.28 7.36 -2.38 -0.02 1.26 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.23 3.26 7.50 -2.91 -0.02 3.24 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 45 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 46 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -86.66 377.65 3.14 -83.52 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.31 Total: 15.14 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 7.92 Total: 27.55 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -6.38 Total: -137.28 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.74 Total: -39.67 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -86.66 3.14 -83.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968593351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.574 kcal (2) G-P(sol) polarization free energy of solvation -86.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds