Wall clock time and date at job start Tue Mar 31 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99419 * 2 1 4 4 C 1.53004 * 109.46929 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47076 * 175.02023 * 4 3 2 6 6 N 1.28448 * 125.19071 * 274.53300 * 5 4 3 7 7 C 1.30864 * 110.92661 * 179.97438 * 6 5 4 8 8 C 1.39675 * 107.85989 * 359.76758 * 7 6 5 9 9 C 1.36594 * 125.19078 * 94.50966 * 5 4 3 10 10 C 1.47161 * 126.88343 * 359.97438 * 9 5 4 11 11 O 1.21624 * 120.00433 * 8.03592 * 10 9 5 12 12 N 1.34781 * 120.00130 * 188.03160 * 10 9 5 13 13 C 1.47422 * 125.64718 * 358.55541 * 12 10 9 14 14 C 1.54907 * 104.83318 * 155.83465 * 13 12 10 15 15 C 1.55154 * 101.58325 * 37.00513 * 14 13 12 16 16 H 1.09005 * 110.71916 * 82.86494 * 15 14 13 17 17 N 1.46498 * 110.72437 * 206.13572 * 15 14 13 18 18 C 1.36943 * 120.00203 * 273.54906 * 17 15 14 19 19 H 1.08001 * 119.99748 * 0.02562 * 18 17 15 20 20 C 1.38804 * 120.00123 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00242 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99991 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47139 * 90.00461 * 22 20 18 24 24 H 1.48501 * 109.46994 * 210.00473 * 22 20 18 25 25 H 1.48502 * 109.47047 * 330.00404 * 22 20 18 26 26 C 1.47025 * 125.64837 * 178.50639 * 12 10 9 27 27 H 1.09000 * 110.01064 * 300.58784 * 26 12 10 28 28 C 1.53001 * 109.87934 * 61.68210 * 26 12 10 29 29 H 1.09003 * 109.46480 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47029 * 299.99604 * 1 2 3 31 31 H 1.08995 * 109.47007 * 59.99935 * 1 2 3 32 32 H 1.09004 * 109.47056 * 60.00746 * 3 2 1 33 33 H 1.08995 * 109.47480 * 300.00244 * 3 2 1 34 34 H 1.09000 * 109.46919 * 55.02157 * 4 3 2 35 35 H 1.08998 * 109.47211 * 295.02654 * 4 3 2 36 36 H 1.07994 * 126.06880 * 180.02562 * 7 6 5 37 37 H 1.08004 * 127.31727 * 180.26863 * 8 7 6 38 38 H 1.08996 * 110.37339 * 36.99132 * 13 12 10 39 39 H 1.09006 * 110.36683 * 274.66826 * 13 12 10 40 40 H 1.09004 * 111.00517 * 155.08257 * 14 13 12 41 41 H 1.08999 * 111.00126 * 278.89484 * 14 13 12 42 42 H 0.96998 * 119.99847 * 93.54337 * 17 15 14 43 43 H 0.96999 * 120.00562 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.46749 * 177.80846 * 28 26 12 45 45 H 1.09001 * 109.46890 * 297.80291 * 28 26 12 46 46 H 1.09003 * 109.47281 * 57.80895 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1308 2.5180 -0.1192 6 7 4.3491 3.1345 -1.2247 7 6 4.8895 4.3064 -1.0075 8 6 5.0294 4.4643 0.3732 9 6 4.5381 3.2952 0.9275 10 6 4.4631 2.9597 2.3584 11 8 4.1375 1.8400 2.7043 12 7 4.7554 3.8931 3.2857 13 6 5.1911 5.2737 3.0075 14 6 4.7986 6.0761 4.2731 15 6 5.0838 5.0448 5.3967 16 1 6.1404 5.0487 5.6647 17 7 4.2490 5.3126 6.5703 18 6 4.6699 6.2036 7.5212 19 1 5.6173 6.7092 7.4056 20 6 3.8787 6.4578 8.6329 21 7 2.7239 5.8420 8.7735 22 14 4.4533 7.6727 9.9303 23 1 3.9689 9.0331 9.5837 24 1 3.9104 7.2765 11.2545 25 1 5.9373 7.6745 9.9841 26 6 4.6916 3.7033 4.7423 27 1 3.6793 3.4283 5.0386 28 6 5.6734 2.6099 5.1680 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8515 0.5687 -0.8412 35 1 3.8630 0.7230 0.9320 36 1 5.1726 5.0256 -1.7618 37 1 5.4362 5.3169 0.8968 38 1 4.6720 5.6665 2.1333 39 1 6.2700 5.3078 2.8562 40 1 5.4264 6.9600 4.3856 41 1 3.7436 6.3489 4.2511 42 1 3.3979 4.8588 6.6739 43 1 2.1711 6.0193 9.5506 44 1 5.6489 2.5017 6.2524 45 1 5.3902 1.6659 4.7023 46 1 6.6805 2.8830 4.8528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986413436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:21 Heat of formation + Delta-G solvation = 32.249016 kcal Electronic energy + Delta-G solvation = -27811.584580 eV Core-core repulsion = 23932.474071 eV Total energy + Delta-G solvation = -3879.110509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.72996 -39.88877 -38.25976 -37.48121 -34.49513 -33.87761 -32.22994 -31.14783 -30.44978 -29.55191 -29.00707 -26.59226 -25.38093 -24.23133 -23.46444 -23.30105 -21.84975 -21.28552 -19.97620 -19.33170 -17.32152 -17.29463 -16.93137 -16.40266 -16.30458 -16.22657 -15.56392 -15.21158 -14.89709 -14.57055 -14.24020 -14.12196 -13.86575 -13.60015 -13.40262 -13.16706 -12.91721 -12.71556 -12.36094 -12.26164 -11.97561 -11.77406 -11.63832 -11.56582 -11.22429 -11.10110 -10.94199 -10.75266 -10.62921 -10.30503 -10.11630 -10.03534 -9.87528 -9.73675 -9.39618 -9.19493 -8.98476 -8.54219 -7.08302 -5.85906 -3.16762 1.14225 2.02744 2.46034 2.97404 3.17436 3.38217 3.43762 3.45508 3.64961 4.30103 4.34911 4.50717 4.61199 4.75600 4.92356 4.94583 4.99975 5.05339 5.08531 5.15943 5.19875 5.34366 5.37675 5.40538 5.42631 5.51533 5.55454 5.58254 5.65087 5.71168 5.86049 6.01179 6.06926 6.23521 6.31154 6.37877 6.50504 6.51962 6.55213 6.62034 6.74492 6.86041 7.53986 7.61774 7.86583 8.11903 8.31182 9.42873 9.96482 10.31067 11.36186 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.002955 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.263256 B = 9473.400856 C =10373.071791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.055 3.945 4 C 0.116 3.884 5 N -0.258 5.258 6 N -0.280 5.280 7 C -0.002 4.002 8 C -0.201 4.201 9 C -0.024 4.024 10 C 0.599 3.401 11 O -0.542 6.542 12 N -0.589 5.589 13 C 0.082 3.918 14 C -0.157 4.157 15 C 0.177 3.823 16 H 0.067 0.933 17 N -0.715 5.715 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.130 3.870 27 H 0.081 0.919 28 C -0.156 4.156 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -5.409 -19.798 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.023 4.023 4 C -0.005 4.005 5 N -0.046 5.046 6 N -0.112 5.112 7 C -0.179 4.179 8 C -0.229 4.229 9 C -0.152 4.152 10 C 0.386 3.614 11 O -0.421 6.421 12 N -0.322 5.322 13 C -0.041 4.041 14 C -0.198 4.198 15 C 0.065 3.935 16 H 0.085 0.915 17 N -0.355 5.355 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.027 3.973 27 H 0.099 0.901 28 C -0.214 4.214 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.204 0.796 37 H 0.193 0.807 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.220 0.780 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.641 -6.994 -20.330 21.562 hybrid contribution -0.015 1.482 1.265 1.949 sum 1.626 -5.512 -19.065 19.912 Atomic orbital electron populations 1.22790 0.80030 1.03122 1.00352 1.87790 1.20473 1.26518 1.95548 1.22644 0.92574 0.85708 1.01408 1.21925 0.92493 0.78659 1.07409 1.45476 1.42640 1.14567 1.01962 1.73201 1.18484 1.08957 1.10562 1.23634 1.03296 0.94788 0.96160 1.22927 1.06722 0.98520 0.94726 1.21449 1.08950 0.94196 0.90596 1.16483 0.78034 0.84118 0.82769 1.90761 1.49401 1.20488 1.81417 1.48182 1.65037 1.12228 1.06710 1.22940 0.99528 0.81380 1.00207 1.23610 1.02665 0.99288 0.94239 1.21249 0.95837 0.89039 0.87370 0.91550 1.42341 1.21778 1.50886 1.20499 1.19189 1.02872 1.16342 0.99125 0.90942 1.24765 0.96815 1.00295 0.98697 1.69660 1.12212 1.45480 1.30353 0.86182 0.77883 0.80781 0.81252 1.21646 1.21741 1.20663 1.21982 1.00559 0.97568 0.77203 0.90136 1.22068 0.98327 0.98695 1.02278 0.89117 0.93590 0.93929 0.92294 0.92524 0.87618 0.85037 0.79587 0.80738 0.89722 0.91031 0.90292 0.90504 0.77975 0.93339 0.90909 0.91843 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.48 10.70 -35.23 -0.38 -4.85 16 3 C 0.05 0.63 6.26 37.16 0.23 0.86 16 4 C 0.12 1.38 6.37 -4.04 -0.03 1.35 16 5 N -0.26 -3.36 3.35 -57.14 -0.19 -3.55 16 6 N -0.28 -3.51 11.90 30.59 0.36 -3.14 16 7 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 8 C -0.20 -2.20 9.30 -38.98 -0.36 -2.56 16 9 C -0.02 -0.32 6.90 -82.06 -0.57 -0.89 16 10 C 0.60 9.28 7.63 -12.64 -0.10 9.18 16 11 O -0.54 -9.57 13.59 5.26 0.07 -9.50 16 12 N -0.59 -8.76 3.06 -164.37 -0.50 -9.26 16 13 C 0.08 1.01 5.31 -2.53 -0.01 0.99 16 14 C -0.16 -2.39 6.77 -24.59 -0.17 -2.56 16 15 C 0.18 3.21 3.12 -66.10 -0.21 3.00 16 16 H 0.07 1.21 7.83 -51.93 -0.41 0.80 16 17 N -0.71 -16.72 5.25 -51.65 -0.27 -16.99 16 18 C -0.24 -6.36 9.98 -15.06 -0.15 -6.51 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 22 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.13 2.19 3.22 -66.95 -0.22 1.98 16 27 H 0.08 1.53 7.68 -51.93 -0.40 1.13 16 28 C -0.16 -2.49 9.09 37.16 0.34 -2.15 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.13 1.75 5.94 -51.93 -0.31 1.44 16 36 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.18 1.52 4.91 -52.48 -0.26 1.26 16 38 H 0.08 0.89 5.24 -51.93 -0.27 0.62 16 39 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.39 9.79 7.51 -40.82 -0.31 9.49 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.05 6.86 -51.93 -0.36 0.69 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -31.34 373.93 -6.92 -38.26 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.92 Total: 9.79 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.42 Total: 3.51 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.12 Total: -59.32 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.31 Total: -14.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.34 -6.92 -38.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.508 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds