Wall clock time and date at job start Tue Mar 31 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99419 * 2 1 4 4 C 1.53004 * 109.46929 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47076 * 175.02023 * 4 3 2 6 6 N 1.28448 * 125.19071 * 274.53300 * 5 4 3 7 7 C 1.30864 * 110.92661 * 179.97438 * 6 5 4 8 8 C 1.39675 * 107.85989 * 359.76758 * 7 6 5 9 9 C 1.36594 * 125.19078 * 94.50966 * 5 4 3 10 10 C 1.47161 * 126.88343 * 359.97438 * 9 5 4 11 11 O 1.21624 * 120.00433 * 8.03592 * 10 9 5 12 12 N 1.34781 * 120.00130 * 188.03160 * 10 9 5 13 13 C 1.47422 * 125.64718 * 358.55541 * 12 10 9 14 14 C 1.54907 * 104.83318 * 155.83465 * 13 12 10 15 15 C 1.55154 * 101.58325 * 37.00513 * 14 13 12 16 16 H 1.09005 * 110.71916 * 82.86494 * 15 14 13 17 17 N 1.46498 * 110.72437 * 206.13572 * 15 14 13 18 18 C 1.36943 * 120.00203 * 273.54906 * 17 15 14 19 19 H 1.08001 * 119.99748 * 0.02562 * 18 17 15 20 20 C 1.38804 * 120.00123 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00242 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99991 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47139 * 90.00461 * 22 20 18 24 24 H 1.48501 * 109.46994 * 210.00473 * 22 20 18 25 25 H 1.48502 * 109.47047 * 330.00404 * 22 20 18 26 26 C 1.47025 * 125.64837 * 178.50639 * 12 10 9 27 27 H 1.09000 * 110.01064 * 300.58784 * 26 12 10 28 28 C 1.53001 * 109.87934 * 61.68210 * 26 12 10 29 29 H 1.09003 * 109.46480 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47029 * 299.99604 * 1 2 3 31 31 H 1.08995 * 109.47007 * 59.99935 * 1 2 3 32 32 H 1.09004 * 109.47056 * 60.00746 * 3 2 1 33 33 H 1.08995 * 109.47480 * 300.00244 * 3 2 1 34 34 H 1.09000 * 109.46919 * 55.02157 * 4 3 2 35 35 H 1.08998 * 109.47211 * 295.02654 * 4 3 2 36 36 H 1.07994 * 126.06880 * 180.02562 * 7 6 5 37 37 H 1.08004 * 127.31727 * 180.26863 * 8 7 6 38 38 H 1.08996 * 110.37339 * 36.99132 * 13 12 10 39 39 H 1.09006 * 110.36683 * 274.66826 * 13 12 10 40 40 H 1.09004 * 111.00517 * 155.08257 * 14 13 12 41 41 H 1.08999 * 111.00126 * 278.89484 * 14 13 12 42 42 H 0.96998 * 119.99847 * 93.54337 * 17 15 14 43 43 H 0.96999 * 120.00562 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.46749 * 177.80846 * 28 26 12 45 45 H 1.09001 * 109.46890 * 297.80291 * 28 26 12 46 46 H 1.09003 * 109.47281 * 57.80895 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1308 2.5180 -0.1192 6 7 4.3491 3.1345 -1.2247 7 6 4.8895 4.3064 -1.0075 8 6 5.0294 4.4643 0.3732 9 6 4.5381 3.2952 0.9275 10 6 4.4631 2.9597 2.3584 11 8 4.1375 1.8400 2.7043 12 7 4.7554 3.8931 3.2857 13 6 5.1911 5.2737 3.0075 14 6 4.7986 6.0761 4.2731 15 6 5.0838 5.0448 5.3967 16 1 6.1404 5.0487 5.6647 17 7 4.2490 5.3126 6.5703 18 6 4.6699 6.2036 7.5212 19 1 5.6173 6.7092 7.4056 20 6 3.8787 6.4578 8.6329 21 7 2.7239 5.8420 8.7735 22 14 4.4533 7.6727 9.9303 23 1 3.9689 9.0331 9.5837 24 1 3.9104 7.2765 11.2545 25 1 5.9373 7.6745 9.9841 26 6 4.6916 3.7033 4.7423 27 1 3.6793 3.4283 5.0386 28 6 5.6734 2.6099 5.1680 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8515 0.5687 -0.8412 35 1 3.8630 0.7230 0.9320 36 1 5.1726 5.0256 -1.7618 37 1 5.4362 5.3169 0.8968 38 1 4.6720 5.6665 2.1333 39 1 6.2700 5.3078 2.8562 40 1 5.4264 6.9600 4.3856 41 1 3.7436 6.3489 4.2511 42 1 3.3979 4.8588 6.6739 43 1 2.1711 6.0193 9.5506 44 1 5.6489 2.5017 6.2524 45 1 5.3902 1.6659 4.7023 46 1 6.6805 2.8830 4.8528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986413436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:20 Heat of formation + Delta-G solvation = 10.766927 kcal Electronic energy + Delta-G solvation = -27812.516113 eV Core-core repulsion = 23932.474071 eV Total energy + Delta-G solvation = -3880.042043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.64323 -41.12636 -39.13163 -38.78389 -36.04787 -34.94528 -33.67665 -32.58977 -31.67618 -30.52941 -30.34499 -27.35649 -26.92278 -25.33141 -24.96875 -24.41745 -22.85013 -22.48031 -21.30088 -20.41673 -19.16437 -18.34140 -18.00981 -17.48218 -17.25808 -17.20164 -16.69475 -16.46500 -16.20910 -15.70393 -15.48495 -15.30172 -15.12132 -14.83175 -14.74019 -14.41937 -14.12408 -13.87560 -13.65688 -13.29898 -13.16888 -13.05339 -12.86177 -12.70789 -12.60801 -12.49420 -12.39928 -12.14183 -12.10646 -11.80282 -11.67788 -11.48452 -11.11056 -10.88234 -10.85902 -10.35291 -10.08650 -9.74342 -9.00919 -7.92354 -5.22197 0.14129 1.08506 1.51337 1.52305 1.60531 1.62121 1.85677 2.08216 2.58802 2.80838 3.24878 3.41898 3.44787 3.70247 3.72957 3.76715 3.90879 3.99471 4.05611 4.13970 4.16922 4.32427 4.37555 4.38748 4.41768 4.44141 4.51074 4.54173 4.64518 4.66888 4.71095 4.74677 4.85453 4.93996 5.03969 5.21908 5.25467 5.28759 5.46863 5.48862 5.57538 5.65641 5.92771 6.27715 6.37587 6.87734 7.04092 7.34666 8.06506 8.29806 9.31198 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.002955 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.263256 B = 9473.400856 C =10373.071791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.064 3.936 4 C 0.117 3.883 5 N -0.267 5.267 6 N -0.295 5.295 7 C 0.005 3.995 8 C -0.184 4.184 9 C -0.051 4.051 10 C 0.596 3.404 11 O -0.574 6.574 12 N -0.590 5.590 13 C 0.088 3.912 14 C -0.148 4.148 15 C 0.171 3.829 16 H 0.074 0.926 17 N -0.729 5.729 18 C -0.234 4.234 19 H 0.085 0.915 20 C -0.076 4.076 21 N -0.972 5.972 22 Si 0.972 3.028 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.266 1.266 26 C 0.137 3.863 27 H 0.049 0.951 28 C -0.146 4.146 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.226 0.774 37 H 0.202 0.798 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -3.736 -22.140 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.003 4.003 5 N -0.056 5.056 6 N -0.127 5.127 7 C -0.171 4.171 8 C -0.212 4.212 9 C -0.178 4.178 10 C 0.384 3.616 11 O -0.455 6.455 12 N -0.322 5.322 13 C -0.033 4.033 14 C -0.188 4.188 15 C 0.061 3.939 16 H 0.092 0.908 17 N -0.369 5.369 18 C -0.365 4.365 19 H 0.103 0.897 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.801 3.199 23 H -0.215 1.215 24 H -0.229 1.229 25 H -0.191 1.191 26 C 0.033 3.967 27 H 0.067 0.933 28 C -0.204 4.204 29 H 0.126 0.874 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.242 0.758 37 H 0.218 0.782 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.592 -5.302 -22.726 23.612 hybrid contribution -0.588 0.930 1.877 2.175 sum 3.005 -4.372 -20.850 21.514 Atomic orbital electron populations 1.23006 0.78529 1.04539 1.00893 1.87767 1.22194 1.26558 1.95608 1.22507 0.92430 0.85677 1.00752 1.21857 0.92661 0.78867 1.06947 1.45530 1.43232 1.14795 1.02027 1.73215 1.19041 1.09995 1.10419 1.24325 1.01611 0.94416 0.96794 1.23278 1.04953 0.97885 0.95065 1.21339 1.11211 0.95746 0.89525 1.16808 0.77310 0.83674 0.83771 1.90747 1.50715 1.21929 1.82110 1.48159 1.65138 1.13338 1.05537 1.23136 1.01715 0.79104 0.99346 1.23421 1.01846 0.99294 0.94288 1.21447 0.95191 0.90567 0.86649 0.90791 1.42521 1.21844 1.50561 1.21944 1.19614 1.02621 1.15343 0.98935 0.89689 1.25554 0.97291 1.02742 1.01197 1.69828 1.13743 1.47804 1.30873 0.85163 0.78045 0.78510 0.78168 1.21470 1.22929 1.19056 1.21676 0.99011 0.97167 0.78848 0.93312 1.21961 0.99027 0.98011 1.01386 0.87351 0.93950 0.92462 0.94218 0.91692 0.86284 0.86954 0.75805 0.78159 0.87207 0.87772 0.88625 0.92583 0.79743 0.94187 0.92057 0.92794 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -9.41 10.70 -148.98 -1.59 -11.01 16 3 C 0.06 1.50 6.26 71.98 0.45 1.95 16 4 C 0.12 2.81 6.37 86.38 0.55 3.36 16 5 N -0.27 -6.64 3.35 -334.70 -1.12 -7.76 16 6 N -0.30 -6.67 11.90 -57.14 -0.68 -7.35 16 7 C 0.00 0.08 12.03 85.18 1.02 1.11 16 8 C -0.18 -3.32 9.30 22.66 0.21 -3.11 16 9 C -0.05 -1.29 6.90 40.79 0.28 -1.01 16 10 C 0.60 18.20 7.63 86.59 0.66 18.86 16 11 O -0.57 -20.95 13.59 -4.11 -0.06 -21.01 16 12 N -0.59 -16.83 3.06 -792.19 -2.43 -19.25 16 13 C 0.09 1.86 5.31 86.85 0.46 2.32 16 14 C -0.15 -4.19 6.77 31.98 0.22 -3.97 16 15 C 0.17 6.06 3.12 46.18 0.14 6.21 16 16 H 0.07 2.54 7.83 -2.38 -0.02 2.52 16 17 N -0.73 -34.55 5.25 -317.33 -1.67 -36.22 16 18 C -0.23 -12.09 9.98 84.03 0.84 -11.26 16 19 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 22 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.14 4.66 3.22 45.34 0.15 4.80 16 27 H 0.05 1.97 7.68 -2.39 -0.02 1.95 16 28 C -0.15 -4.68 9.09 71.98 0.65 -4.03 16 29 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.11 3.14 5.94 -2.39 -0.01 3.12 16 36 H 0.23 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.20 2.40 4.91 -2.91 -0.01 2.39 16 38 H 0.11 1.82 5.24 -2.39 -0.01 1.80 16 39 H 0.10 1.63 8.07 -2.38 -0.02 1.61 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.37 19.60 7.51 -92.71 -0.70 18.91 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.05 1.83 6.86 -2.39 -0.02 1.81 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -70.06 373.93 2.42 -67.64 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.30 Total: 33.37 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 7.35 Total: 13.20 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.61 Total: -128.65 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.65 Total: -32.02 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.06 2.42 -67.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.408 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds