Wall clock time and date at job start Tue Mar 31 2020 14:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00017 * 2 1 4 4 C 1.52998 * 109.47130 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47546 * 175.43282 * 4 3 2 6 6 N 1.28445 * 125.19075 * 266.78254 * 5 4 3 7 7 C 1.30861 * 110.92949 * 180.02562 * 6 5 4 8 8 C 1.39681 * 107.85794 * 359.76540 * 7 6 5 9 9 C 1.36599 * 125.18927 * 86.79006 * 5 4 3 10 10 C 1.47159 * 126.88479 * 359.95156 * 9 5 4 11 11 O 1.21622 * 120.00297 * 353.88297 * 10 9 5 12 12 N 1.34781 * 119.99579 * 173.87869 * 10 9 5 13 13 C 1.47425 * 125.65233 * 354.64035 * 12 10 9 14 14 C 1.55128 * 104.94010 * 204.03933 * 13 12 10 15 15 C 1.55151 * 101.48721 * 323.22042 * 14 13 12 16 16 H 1.09008 * 110.72120 * 276.83539 * 15 14 13 17 17 N 1.46495 * 110.72357 * 153.73889 * 15 14 13 18 18 C 1.36932 * 120.00270 * 88.83541 * 17 15 14 19 19 H 1.08002 * 119.99865 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00107 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00177 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00052 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47115 * 269.99789 * 22 20 18 24 24 H 1.48493 * 109.47017 * 29.99785 * 22 20 18 25 25 H 1.48503 * 109.47107 * 150.00082 * 22 20 18 26 26 C 1.47030 * 125.64431 * 174.68150 * 12 10 9 27 27 H 1.09004 * 109.88157 * 298.32082 * 26 12 10 28 28 C 1.53002 * 110.01323 * 59.41425 * 26 12 10 29 29 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46673 * 299.99816 * 1 2 3 31 31 H 1.08995 * 109.46906 * 59.99452 * 1 2 3 32 32 H 1.09006 * 109.47322 * 60.00232 * 3 2 1 33 33 H 1.08999 * 109.47742 * 300.00290 * 3 2 1 34 34 H 1.09002 * 109.47270 * 55.43294 * 4 3 2 35 35 H 1.09002 * 109.47552 * 295.42917 * 4 3 2 36 36 H 1.07994 * 126.07312 * 180.02562 * 7 6 5 37 37 H 1.07997 * 127.31689 * 180.23784 * 8 7 6 38 38 H 1.08996 * 110.36519 * 322.99813 * 13 12 10 39 39 H 1.08992 * 110.36572 * 85.32347 * 13 12 10 40 40 H 1.09004 * 111.15615 * 205.13165 * 14 13 12 41 41 H 1.08998 * 110.93451 * 81.21878 * 14 13 12 42 42 H 0.97003 * 119.99851 * 268.84975 * 17 15 14 43 43 H 0.96997 * 119.99959 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.47414 * 177.88606 * 28 26 12 45 45 H 1.09005 * 109.46992 * 297.89045 * 28 26 12 46 46 H 1.08998 * 109.46743 * 57.88455 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1311 2.5186 -0.1106 6 7 4.4788 3.0857 -1.2094 7 6 4.9805 4.2732 -0.9842 8 6 4.9494 4.4970 0.3942 9 6 4.4014 3.3490 0.9397 10 6 4.1541 3.0795 2.3651 11 8 3.5583 2.0733 2.6994 12 7 4.5880 3.9478 3.3002 13 6 5.4148 5.1418 3.0465 14 6 6.1362 5.4217 4.3910 15 6 5.0337 5.0487 5.4168 16 1 4.3459 5.8816 5.5639 17 7 5.6286 4.6392 6.6913 18 6 5.8979 5.5755 7.6535 19 1 5.6713 6.6159 7.4730 20 6 6.4621 5.1874 8.8610 21 7 6.7205 6.0873 9.7861 22 14 6.8547 3.3879 9.1730 23 1 5.6796 2.7253 9.7937 24 1 7.1763 2.7211 7.8858 25 1 8.0203 3.2870 10.0876 26 6 4.3159 3.8606 4.7425 27 1 3.2426 3.9257 4.9218 28 6 4.8571 2.5420 5.2987 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8465 -0.8899 34 1 3.8513 0.5748 -0.8471 35 1 3.8633 0.7159 0.9272 36 1 5.3490 4.9600 -1.7317 37 1 5.2837 5.3778 0.9222 38 1 6.1416 4.9397 2.2598 39 1 4.7848 5.9884 2.7738 40 1 6.4116 6.4728 4.4782 41 1 7.0097 4.7798 4.5053 42 1 5.8320 3.7047 6.8536 43 1 7.1151 5.8162 10.6297 44 1 4.6843 2.5031 6.3742 45 1 4.3459 1.7079 4.8180 46 1 5.9268 2.4758 5.0999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986413438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:24 Heat of formation + Delta-G solvation = 40.837291 kcal Electronic energy + Delta-G solvation = -28013.724967 eV Core-core repulsion = 24134.986874 eV Total energy + Delta-G solvation = -3878.738094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78629 -40.03434 -38.30308 -37.64482 -34.69857 -33.96218 -32.23267 -31.14129 -30.71474 -29.59246 -29.17835 -26.64140 -25.65479 -24.39633 -23.61239 -23.09407 -21.92072 -21.51801 -19.68542 -19.06583 -18.04521 -17.41383 -16.96387 -16.52805 -16.34703 -16.08207 -15.75857 -15.43325 -14.91350 -14.52447 -14.37242 -14.26465 -13.95647 -13.78916 -13.47956 -13.19693 -12.93812 -12.71559 -12.42064 -12.23993 -11.99560 -11.89223 -11.71572 -11.64612 -11.50567 -11.28383 -11.02822 -10.82871 -10.59374 -10.40922 -10.14323 -10.06193 -9.94390 -9.61992 -9.45440 -9.25222 -9.02563 -8.63723 -7.38808 -5.86114 -3.23341 1.07376 1.97472 2.40264 2.88096 3.09909 3.31511 3.34322 3.40490 3.60891 4.24446 4.27320 4.50899 4.56936 4.71915 4.82985 4.88263 4.94580 4.99575 5.02992 5.05043 5.10689 5.26424 5.31776 5.32695 5.37659 5.44739 5.47851 5.48996 5.53302 5.58301 5.76766 5.82499 5.94873 6.10209 6.25353 6.29674 6.43604 6.44854 6.45933 6.51966 6.70782 6.76545 7.44622 7.80201 7.88446 8.04061 8.32561 9.09607 9.81873 10.00170 11.31669 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.003150 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.198898 B = 8886.428520 C = 9950.723420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.055 3.945 4 C 0.124 3.876 5 N -0.258 5.258 6 N -0.279 5.279 7 C -0.002 4.002 8 C -0.196 4.196 9 C -0.027 4.027 10 C 0.599 3.401 11 O -0.540 6.540 12 N -0.591 5.591 13 C 0.086 3.914 14 C -0.154 4.154 15 C 0.179 3.821 16 H 0.075 0.925 17 N -0.741 5.741 18 C -0.250 4.250 19 H 0.092 0.908 20 C 0.010 3.990 21 N -0.930 5.930 22 Si 0.878 3.122 23 H -0.282 1.282 24 H -0.276 1.276 25 H -0.289 1.289 26 C 0.129 3.871 27 H 0.079 0.921 28 C -0.164 4.164 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.188 0.812 37 H 0.173 0.827 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.368 0.632 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 -5.800 -22.475 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.023 4.023 4 C 0.003 3.997 5 N -0.047 5.047 6 N -0.111 5.111 7 C -0.178 4.178 8 C -0.225 4.225 9 C -0.154 4.154 10 C 0.387 3.613 11 O -0.419 6.419 12 N -0.324 5.324 13 C -0.037 4.037 14 C -0.195 4.195 15 C 0.068 3.932 16 H 0.093 0.907 17 N -0.385 5.385 18 C -0.379 4.379 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.577 5.577 22 Si 0.707 3.293 23 H -0.208 1.208 24 H -0.202 1.202 25 H -0.215 1.215 26 C 0.026 3.974 27 H 0.097 0.903 28 C -0.223 4.223 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.205 0.795 37 H 0.190 0.810 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.204 0.796 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.027 -7.264 -22.992 25.413 hybrid contribution 0.430 -0.296 0.884 1.027 sum -7.597 -7.560 -22.107 24.569 Atomic orbital electron populations 1.22776 0.80079 1.03070 1.00286 1.87782 1.20430 1.26589 1.95551 1.22637 0.92408 0.85712 1.01493 1.21752 0.92629 0.78592 1.06678 1.45475 1.42837 1.14199 1.02194 1.73215 1.16597 1.10540 1.10706 1.23643 1.03895 0.94160 0.96147 1.22834 1.05583 0.99193 0.94862 1.21448 1.09603 0.93794 0.90605 1.16481 0.79483 0.82658 0.82698 1.90789 1.42964 1.26285 1.81829 1.48178 1.51153 1.25732 1.07345 1.22879 0.93888 0.87062 0.99880 1.23597 0.99913 1.02831 0.93135 1.21162 0.92849 0.93435 0.85767 0.90663 1.42978 1.74688 1.07268 1.13566 1.19048 1.34893 0.90866 0.93124 0.88979 1.24649 1.00800 0.96893 0.96317 1.69688 1.48809 1.32157 1.07003 0.86673 0.78232 0.86540 0.77815 1.20820 1.20235 1.21526 1.21929 1.00084 0.97545 0.77835 0.90343 1.22090 1.01396 0.97098 1.01670 0.89165 0.93643 0.93974 0.91732 0.92814 0.87492 0.86114 0.79530 0.80977 0.89984 0.90823 0.89755 0.90663 0.79572 0.92903 0.90919 0.91282 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.27 10.70 -35.23 -0.38 -4.65 16 3 C 0.06 0.61 6.24 37.16 0.23 0.84 16 4 C 0.12 1.40 6.00 -4.04 -0.02 1.37 16 5 N -0.26 -3.20 3.35 -57.14 -0.19 -3.39 16 6 N -0.28 -3.34 11.90 30.59 0.36 -2.98 16 7 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 8 C -0.20 -2.03 9.28 -38.98 -0.36 -2.40 16 9 C -0.03 -0.34 6.89 -82.06 -0.57 -0.90 16 10 C 0.60 8.72 7.64 -12.64 -0.10 8.62 16 11 O -0.54 -8.93 13.12 5.26 0.07 -8.86 16 12 N -0.59 -8.23 3.09 -164.23 -0.51 -8.74 16 13 C 0.09 0.98 5.13 -2.41 -0.01 0.97 16 14 C -0.15 -2.24 6.79 -24.47 -0.17 -2.40 16 15 C 0.18 3.11 3.46 -66.10 -0.23 2.88 16 16 H 0.08 1.31 8.11 -51.92 -0.42 0.89 16 17 N -0.74 -16.26 4.78 -51.66 -0.25 -16.50 16 18 C -0.25 -6.61 10.45 -15.06 -0.16 -6.77 16 19 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 21 N -0.93 -28.20 13.97 55.49 0.78 -27.43 16 22 Si 0.88 21.38 27.73 -169.99 -4.71 16.67 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.13 2.04 3.51 -66.95 -0.23 1.81 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 C -0.16 -2.75 7.93 37.16 0.29 -2.45 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.12 1.49 6.65 -51.93 -0.35 1.15 16 36 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.17 1.40 4.98 -52.49 -0.26 1.14 16 38 H 0.08 0.82 5.88 -51.93 -0.31 0.51 16 39 H 0.07 0.71 7.80 -51.93 -0.41 0.30 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.37 8.07 2.85 -40.82 -0.12 7.95 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.07 1.28 6.72 -51.93 -0.35 0.93 16 45 H 0.07 1.15 6.62 -51.93 -0.34 0.81 16 46 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -32.25 366.14 -6.59 -38.84 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.76 Total: 8.63 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.51 Total: 2.90 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.19 Total: -59.04 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.31 Total: -13.51 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.25 -6.59 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.675 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds