Wall clock time and date at job start Tue Mar 31 2020 14:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00017 * 2 1 4 4 C 1.52998 * 109.47130 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47546 * 175.43282 * 4 3 2 6 6 N 1.28445 * 125.19075 * 266.78254 * 5 4 3 7 7 C 1.30861 * 110.92949 * 180.02562 * 6 5 4 8 8 C 1.39681 * 107.85794 * 359.76540 * 7 6 5 9 9 C 1.36599 * 125.18927 * 86.79006 * 5 4 3 10 10 C 1.47159 * 126.88479 * 359.95156 * 9 5 4 11 11 O 1.21622 * 120.00297 * 353.88297 * 10 9 5 12 12 N 1.34781 * 119.99579 * 173.87869 * 10 9 5 13 13 C 1.47425 * 125.65233 * 354.64035 * 12 10 9 14 14 C 1.55128 * 104.94010 * 204.03933 * 13 12 10 15 15 C 1.55151 * 101.48721 * 323.22042 * 14 13 12 16 16 H 1.09008 * 110.72120 * 276.83539 * 15 14 13 17 17 N 1.46495 * 110.72357 * 153.73889 * 15 14 13 18 18 C 1.36932 * 120.00270 * 88.83541 * 17 15 14 19 19 H 1.08002 * 119.99865 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00107 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00177 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00052 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47115 * 269.99789 * 22 20 18 24 24 H 1.48493 * 109.47017 * 29.99785 * 22 20 18 25 25 H 1.48503 * 109.47107 * 150.00082 * 22 20 18 26 26 C 1.47030 * 125.64431 * 174.68150 * 12 10 9 27 27 H 1.09004 * 109.88157 * 298.32082 * 26 12 10 28 28 C 1.53002 * 110.01323 * 59.41425 * 26 12 10 29 29 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46673 * 299.99816 * 1 2 3 31 31 H 1.08995 * 109.46906 * 59.99452 * 1 2 3 32 32 H 1.09006 * 109.47322 * 60.00232 * 3 2 1 33 33 H 1.08999 * 109.47742 * 300.00290 * 3 2 1 34 34 H 1.09002 * 109.47270 * 55.43294 * 4 3 2 35 35 H 1.09002 * 109.47552 * 295.42917 * 4 3 2 36 36 H 1.07994 * 126.07312 * 180.02562 * 7 6 5 37 37 H 1.07997 * 127.31689 * 180.23784 * 8 7 6 38 38 H 1.08996 * 110.36519 * 322.99813 * 13 12 10 39 39 H 1.08992 * 110.36572 * 85.32347 * 13 12 10 40 40 H 1.09004 * 111.15615 * 205.13165 * 14 13 12 41 41 H 1.08998 * 110.93451 * 81.21878 * 14 13 12 42 42 H 0.97003 * 119.99851 * 268.84975 * 17 15 14 43 43 H 0.96997 * 119.99959 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.47414 * 177.88606 * 28 26 12 45 45 H 1.09005 * 109.46992 * 297.89045 * 28 26 12 46 46 H 1.08998 * 109.46743 * 57.88455 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1311 2.5186 -0.1106 6 7 4.4788 3.0857 -1.2094 7 6 4.9805 4.2732 -0.9842 8 6 4.9494 4.4970 0.3942 9 6 4.4014 3.3490 0.9397 10 6 4.1541 3.0795 2.3651 11 8 3.5583 2.0733 2.6994 12 7 4.5880 3.9478 3.3002 13 6 5.4148 5.1418 3.0465 14 6 6.1362 5.4217 4.3910 15 6 5.0337 5.0487 5.4168 16 1 4.3459 5.8816 5.5639 17 7 5.6286 4.6392 6.6913 18 6 5.8979 5.5755 7.6535 19 1 5.6713 6.6159 7.4730 20 6 6.4621 5.1874 8.8610 21 7 6.7205 6.0873 9.7861 22 14 6.8547 3.3879 9.1730 23 1 5.6796 2.7253 9.7937 24 1 7.1763 2.7211 7.8858 25 1 8.0203 3.2870 10.0876 26 6 4.3159 3.8606 4.7425 27 1 3.2426 3.9257 4.9218 28 6 4.8571 2.5420 5.2987 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8465 -0.8899 34 1 3.8513 0.5748 -0.8471 35 1 3.8633 0.7159 0.9272 36 1 5.3490 4.9600 -1.7317 37 1 5.2837 5.3778 0.9222 38 1 6.1416 4.9397 2.2598 39 1 4.7848 5.9884 2.7738 40 1 6.4116 6.4728 4.4782 41 1 7.0097 4.7798 4.5053 42 1 5.8320 3.7047 6.8536 43 1 7.1151 5.8162 10.6297 44 1 4.6843 2.5031 6.3742 45 1 4.3459 1.7079 4.8180 46 1 5.9268 2.4758 5.0999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986413438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:23 Heat of formation + Delta-G solvation = 18.575494 kcal Electronic energy + Delta-G solvation = -28014.690311 eV Core-core repulsion = 24134.986874 eV Total energy + Delta-G solvation = -3879.703438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.63844 -41.20675 -39.13030 -38.86532 -36.19764 -34.93381 -33.83493 -32.53019 -31.91800 -30.60864 -30.34323 -27.35019 -27.01506 -25.58828 -24.84561 -24.37705 -22.87880 -22.59414 -20.80417 -20.29552 -19.88634 -18.47264 -17.91969 -17.48113 -17.17890 -17.14020 -16.87295 -16.45309 -16.29677 -15.86483 -15.63652 -15.29859 -15.09205 -14.88798 -14.68126 -14.47184 -14.12442 -13.96356 -13.61025 -13.34315 -13.18573 -13.15440 -13.07305 -12.93172 -12.64212 -12.57704 -12.38331 -12.15580 -11.98955 -11.76853 -11.69930 -11.54179 -11.07909 -10.96572 -10.85118 -10.34978 -10.08121 -9.75461 -9.30850 -8.01462 -5.34621 0.14258 1.09903 1.37257 1.38508 1.45167 1.61224 1.84532 2.08525 2.47501 2.83052 3.22197 3.32553 3.45146 3.53633 3.69532 3.75599 3.85255 3.94132 4.07435 4.09013 4.15744 4.31482 4.33107 4.38966 4.39331 4.44203 4.52453 4.52883 4.58101 4.63412 4.72975 4.75762 4.80398 4.86356 5.00185 5.13209 5.21952 5.27091 5.45129 5.49701 5.65492 5.79678 5.95537 6.22655 6.36009 6.87235 7.04444 7.08042 7.83298 8.00684 9.19594 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.003150 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.198898 B = 8886.428520 C = 9950.723420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.066 3.934 4 C 0.125 3.875 5 N -0.267 5.267 6 N -0.295 5.295 7 C 0.004 3.996 8 C -0.181 4.181 9 C -0.051 4.051 10 C 0.598 3.402 11 O -0.568 6.568 12 N -0.591 5.591 13 C 0.092 3.908 14 C -0.146 4.146 15 C 0.169 3.831 16 H 0.075 0.925 17 N -0.746 5.746 18 C -0.223 4.223 19 H 0.069 0.931 20 C -0.058 4.058 21 N -0.980 5.980 22 Si 0.937 3.063 23 H -0.280 1.280 24 H -0.256 1.256 25 H -0.296 1.296 26 C 0.137 3.863 27 H 0.077 0.923 28 C -0.158 4.158 29 H 0.107 0.893 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.224 0.776 37 H 0.198 0.802 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.369 0.631 43 H 0.257 0.743 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 -5.808 -25.363 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.012 4.012 4 C 0.005 3.995 5 N -0.056 5.056 6 N -0.127 5.127 7 C -0.173 4.173 8 C -0.210 4.210 9 C -0.179 4.179 10 C 0.387 3.613 11 O -0.448 6.448 12 N -0.324 5.324 13 C -0.029 4.029 14 C -0.187 4.187 15 C 0.060 3.940 16 H 0.093 0.907 17 N -0.391 5.391 18 C -0.354 4.354 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.631 5.631 22 Si 0.765 3.235 23 H -0.206 1.206 24 H -0.180 1.180 25 H -0.223 1.223 26 C 0.033 3.967 27 H 0.095 0.905 28 C -0.216 4.216 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.240 0.760 37 H 0.215 0.785 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.205 0.795 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.012 -7.280 -25.956 28.123 hybrid contribution 0.347 -0.223 1.662 1.712 sum -7.665 -7.503 -24.294 26.557 Atomic orbital electron populations 1.22987 0.78579 1.04432 1.00865 1.87758 1.22153 1.26675 1.95617 1.22488 0.92265 0.85635 1.00821 1.21708 0.92791 0.78730 1.06306 1.45535 1.43403 1.14419 1.02244 1.73227 1.17156 1.11614 1.10699 1.24306 1.02443 0.93714 0.96797 1.23180 1.03814 0.98807 0.95151 1.21364 1.11595 0.95194 0.89702 1.16741 0.78932 0.82141 0.83531 1.90775 1.44188 1.27471 1.82400 1.48136 1.51458 1.26485 1.06290 1.23041 0.94289 0.87023 0.98566 1.23425 0.98509 1.02969 0.93769 1.21380 0.93875 0.94081 0.84673 0.90679 1.42987 1.75101 1.06526 1.14522 1.19042 1.32186 0.90633 0.93556 0.91354 1.25340 1.02213 1.00826 0.96576 1.69846 1.51282 1.34278 1.07660 0.85692 0.77590 0.81961 0.78253 1.20634 1.18038 1.22319 1.21672 0.99689 0.96195 0.79159 0.90454 1.22004 1.01048 0.97639 1.00951 0.87499 0.93851 0.92583 0.93572 0.92102 0.86310 0.87758 0.75977 0.78505 0.87542 0.87865 0.88994 0.91946 0.79476 0.93412 0.91993 0.91504 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.76 10.70 -148.98 -1.59 -10.35 16 3 C 0.07 1.41 6.24 71.98 0.45 1.86 16 4 C 0.13 2.76 6.00 86.38 0.52 3.28 16 5 N -0.27 -6.17 3.35 -334.68 -1.12 -7.29 16 6 N -0.30 -6.31 11.90 -57.14 -0.68 -6.99 16 7 C 0.00 0.06 12.03 85.19 1.03 1.08 16 8 C -0.18 -3.03 9.28 22.66 0.21 -2.82 16 9 C -0.05 -1.20 6.89 40.78 0.28 -0.91 16 10 C 0.60 16.52 7.64 86.59 0.66 17.18 16 11 O -0.57 -18.66 13.12 -4.10 -0.05 -18.72 16 12 N -0.59 -15.18 3.09 -791.75 -2.44 -17.63 16 13 C 0.09 1.78 5.13 86.93 0.45 2.23 16 14 C -0.15 -3.90 6.79 32.06 0.22 -3.69 16 15 C 0.17 5.64 3.46 46.18 0.16 5.80 16 16 H 0.08 2.52 8.11 -2.38 -0.02 2.50 16 17 N -0.75 -32.24 4.78 -317.34 -1.52 -33.76 16 18 C -0.22 -11.89 10.45 84.03 0.88 -11.01 16 19 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 20 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 21 N -0.98 -60.96 13.97 21.65 0.30 -60.66 16 22 Si 0.94 44.48 27.73 68.60 1.90 46.39 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.26 -11.07 6.52 99.48 0.65 -10.42 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 C 0.14 4.15 3.51 45.34 0.16 4.31 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 C -0.16 -5.17 7.93 71.98 0.57 -4.60 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 1.15 7.69 -2.38 -0.02 1.13 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.10 2.63 6.65 -2.39 -0.02 2.61 16 36 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.20 2.14 4.98 -2.91 -0.01 2.13 16 38 H 0.11 1.62 5.88 -2.39 -0.01 1.60 16 39 H 0.10 1.48 7.80 -2.39 -0.02 1.46 16 40 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 42 H 0.37 15.79 2.85 -92.71 -0.26 15.52 16 43 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 44 H 0.06 2.13 6.72 -2.39 -0.02 2.12 16 45 H 0.07 2.21 6.62 -2.38 -0.02 2.19 16 46 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 Total: -1.00 -71.19 366.14 2.76 -68.43 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.67 Total: 29.04 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.29 Total: 11.54 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -5.46 Total: -126.33 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.65 Total: -29.07 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.39 kcal Total: -71.19 2.76 -68.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.008 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds