Wall clock time and date at job start Tue Mar 31 2020 14:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00148 * 2 1 4 4 C 1.50695 * 109.46913 * 179.97438 * 3 2 1 5 5 N 1.30450 * 125.99340 * 270.04165 * 4 3 2 6 6 N 1.39931 * 108.90209 * 179.97438 * 5 4 3 7 7 C 1.46497 * 125.75343 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.49240 * 359.74680 * 6 5 4 9 9 C 1.38049 * 107.41229 * 0.39767 * 8 6 5 10 10 C 1.47433 * 126.41197 * 179.87253 * 9 8 6 11 11 O 1.21600 * 119.99956 * 188.26387 * 10 9 8 12 12 N 1.34775 * 119.99813 * 8.26138 * 10 9 8 13 13 C 1.47738 * 125.82352 * 358.66012 * 12 10 9 14 14 C 1.54911 * 104.90390 * 155.98662 * 13 12 10 15 15 C 1.55158 * 101.57776 * 36.95487 * 14 13 12 16 16 H 1.09003 * 110.87226 * 82.93709 * 15 14 13 17 17 N 1.46504 * 110.71664 * 206.13475 * 15 14 13 18 18 C 1.36934 * 119.99934 * 268.52476 * 17 15 14 19 19 H 1.08003 * 120.00319 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00279 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99765 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00480 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46857 * 89.99321 * 22 20 18 24 24 H 1.48494 * 109.47324 * 209.99737 * 22 20 18 25 25 H 1.48497 * 109.46921 * 329.99793 * 22 20 18 26 26 C 1.47032 * 125.64450 * 178.65245 * 12 10 9 27 27 H 1.08996 * 109.88269 * 300.42490 * 26 12 10 28 28 C 1.52997 * 109.87985 * 61.44148 * 26 12 10 29 29 H 1.09007 * 109.46851 * 59.99868 * 1 2 3 30 30 H 1.08994 * 109.47463 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47270 * 300.00443 * 1 2 3 32 32 H 1.08998 * 109.47187 * 59.99793 * 3 2 1 33 33 H 1.09002 * 109.46670 * 299.99792 * 3 2 1 34 34 H 1.09009 * 109.46843 * 89.97801 * 7 6 5 35 35 H 1.09005 * 109.46999 * 209.97244 * 7 6 5 36 36 H 1.08993 * 109.47590 * 329.97595 * 7 6 5 37 37 H 1.07988 * 126.29670 * 180.24429 * 8 6 5 38 38 H 1.09001 * 110.37918 * 37.09647 * 13 12 10 39 39 H 1.09006 * 110.37872 * 274.87528 * 13 12 10 40 40 H 1.09001 * 111.00312 * 278.88078 * 14 13 12 41 41 H 1.08999 * 111.00214 * 155.02641 * 14 13 12 42 42 H 0.97000 * 119.99950 * 88.52568 * 17 15 14 43 43 H 0.97001 * 119.99509 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.47053 * 178.28364 * 28 26 12 45 45 H 1.09001 * 109.47320 * 298.27616 * 28 26 12 46 46 H 1.08995 * 109.47600 * 58.27966 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2763 1.1252 1.0564 6 7 5.6097 1.0192 0.6457 7 6 6.7733 0.9267 1.5310 8 6 5.6426 1.0113 -0.6965 9 6 4.3407 1.1207 -1.1423 10 6 3.8969 1.1560 -2.5478 11 8 2.7367 1.4056 -2.8130 12 7 4.7772 0.9116 -3.5386 13 6 6.2159 0.6236 -3.3656 14 6 6.6205 -0.1629 -4.6374 15 6 5.7698 0.5448 -5.7250 16 1 6.2630 1.4519 -6.0746 17 7 5.5019 -0.3615 -6.8445 18 6 6.3523 -0.3944 -7.9173 19 1 7.2202 0.2479 -7.9384 20 6 6.0982 -1.2527 -8.9783 21 7 5.0402 -2.0353 -8.9528 22 14 7.2578 -1.2972 -10.4421 23 1 8.3191 -2.3079 -10.2023 24 1 6.4973 -1.6586 -11.6653 25 1 7.8789 0.0395 -10.6224 26 6 4.4651 0.8868 -4.9752 27 1 3.7110 0.1263 -5.1777 28 6 3.9534 2.2583 -5.4202 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.9801 -0.1207 1.7510 35 1 7.6388 1.3729 1.0412 36 1 6.5667 1.4591 2.4594 37 1 6.5254 0.9360 -1.3139 38 1 6.3769 0.0150 -2.4759 39 1 6.7832 1.5519 -3.2970 40 1 6.3469 -1.2143 -4.5501 41 1 7.6856 -0.0535 -4.8420 42 1 4.7222 -0.9382 -6.8257 43 1 4.8629 -2.6353 -9.6941 44 1 3.7531 2.2413 -6.4915 45 1 3.0353 2.4955 -4.8827 46 1 4.7072 3.0152 -5.2034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986447469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:59 Heat of formation + Delta-G solvation = 31.831754 kcal Electronic energy + Delta-G solvation = -27863.152834 eV Core-core repulsion = 23984.024231 eV Total energy + Delta-G solvation = -3879.128603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64423 -39.55395 -37.82153 -37.15124 -34.16295 -33.79389 -32.07143 -31.01457 -30.24739 -29.11934 -28.84174 -26.64662 -25.36932 -25.17809 -23.26292 -23.19979 -21.43382 -20.74450 -19.77039 -19.09538 -17.24911 -16.87967 -16.58527 -16.44627 -15.87007 -15.73749 -15.55183 -15.24867 -14.89379 -14.56618 -13.90982 -13.88880 -13.53622 -13.33068 -13.23346 -12.97096 -12.76218 -12.65050 -12.39546 -12.27366 -12.08919 -11.78842 -11.52805 -11.40312 -11.11030 -11.07191 -10.96202 -10.81703 -10.58465 -10.24637 -10.04245 -9.85081 -9.73483 -9.66818 -9.36718 -8.94596 -8.82504 -8.30625 -7.03485 -5.81713 -3.12243 1.38740 1.89866 2.11269 3.22785 3.40509 3.45786 3.47811 3.52720 3.90892 4.21199 4.42883 4.54652 4.70507 4.77799 4.84857 4.96194 4.98658 5.02982 5.20764 5.30630 5.33343 5.35929 5.37762 5.44150 5.48167 5.52481 5.64270 5.68835 5.76057 5.82217 5.97228 6.11201 6.14670 6.22657 6.29868 6.48102 6.56554 6.59349 6.66303 6.82263 6.92832 7.08460 7.37475 7.64909 7.85453 8.35391 8.51096 9.47012 10.01846 10.36513 11.40362 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.003061 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.418958 B = 9145.556944 C =10132.505220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.129 3.871 5 N -0.284 5.284 6 N -0.362 5.362 7 C 0.097 3.903 8 C 0.082 3.918 9 C -0.263 4.263 10 C 0.607 3.393 11 O -0.542 6.542 12 N -0.606 5.606 13 C 0.087 3.913 14 C -0.156 4.156 15 C 0.177 3.823 16 H 0.068 0.932 17 N -0.714 5.714 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.128 3.872 27 H 0.077 0.923 28 C -0.154 4.154 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.199 0.801 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 7.987 21.492 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C 0.062 3.938 4 C -0.039 4.039 5 N -0.107 5.107 6 N -0.141 5.141 7 C -0.044 4.044 8 C -0.068 4.068 9 C -0.278 4.278 10 C 0.397 3.603 11 O -0.420 6.420 12 N -0.339 5.339 13 C -0.036 4.036 14 C -0.198 4.198 15 C 0.065 3.935 16 H 0.086 0.914 17 N -0.354 5.354 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.025 3.975 27 H 0.095 0.905 28 C -0.212 4.212 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.215 0.785 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.226 7.971 22.609 24.005 hybrid contribution 0.497 -0.219 -1.567 1.659 sum 1.724 7.751 21.042 22.491 Atomic orbital electron populations 1.22730 0.80490 1.02832 1.00089 1.87904 1.19932 1.26671 1.95494 1.20724 0.84868 0.85918 1.02304 1.21910 0.95614 0.97303 0.89101 1.77114 0.86533 1.24450 1.22652 1.48342 1.06223 1.54498 1.05030 1.22004 0.83813 1.03928 0.94653 1.23992 0.99906 0.97969 0.84933 1.20252 0.92154 1.20841 0.94538 1.16777 0.84381 0.76555 0.82623 1.90702 1.17444 1.50258 1.83628 1.48397 1.09096 1.69741 1.06711 1.22776 0.81746 0.99181 0.99922 1.23592 1.01383 1.00432 0.94368 1.21244 0.91003 0.93623 0.87643 0.91437 1.42356 1.30452 1.45207 1.17361 1.19206 1.04105 1.18500 0.95730 0.91003 1.24768 0.98017 0.99134 0.98709 1.69671 1.27852 1.27419 1.32699 0.86187 0.79928 0.77583 0.82429 1.21697 1.21755 1.20703 1.21937 0.99108 0.98149 0.78334 0.90452 1.22041 1.01284 0.95870 1.01973 0.93455 0.89578 0.94251 0.92193 0.88920 0.90114 0.88927 0.88874 0.78509 0.90980 0.91536 0.90540 0.90526 0.77935 0.93361 0.91234 0.91847 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.69 10.69 -35.23 -0.38 -6.07 16 3 C 0.14 1.93 6.06 36.00 0.22 2.15 16 4 C 0.13 1.91 6.89 -82.02 -0.57 1.34 16 5 N -0.28 -3.91 12.50 33.89 0.42 -3.49 16 6 N -0.36 -3.83 3.98 -67.60 -0.27 -4.10 16 7 C 0.10 0.51 11.44 59.85 0.68 1.20 16 8 C 0.08 0.90 9.82 -16.56 -0.16 0.74 16 9 C -0.26 -3.85 6.07 -105.06 -0.64 -4.49 16 10 C 0.61 10.27 7.64 -12.52 -0.10 10.18 16 11 O -0.54 -10.55 13.88 5.28 0.07 -10.47 16 12 N -0.61 -9.58 3.08 -164.01 -0.50 -10.09 16 13 C 0.09 1.09 5.28 -2.36 -0.01 1.07 16 14 C -0.16 -2.44 6.77 -24.58 -0.17 -2.61 16 15 C 0.18 3.31 3.14 -66.09 -0.21 3.11 16 16 H 0.07 1.26 7.80 -51.93 -0.40 0.85 16 17 N -0.71 -17.12 5.22 -51.65 -0.27 -17.39 16 18 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 19 H 0.07 1.83 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 22 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.13 2.29 3.21 -66.95 -0.22 2.08 16 27 H 0.08 1.58 7.72 -51.93 -0.40 1.18 16 28 C -0.15 -2.59 9.10 37.16 0.34 -2.25 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.35 6.42 -51.93 -0.33 1.01 16 34 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.20 1.54 4.75 -52.49 -0.25 1.29 16 38 H 0.07 0.75 5.31 -51.93 -0.28 0.48 16 39 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.39 10.09 7.56 -40.82 -0.31 9.78 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.11 6.83 -51.93 -0.35 0.76 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -34.69 375.31 -6.46 -41.15 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.94 Total: 7.84 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 0.04 Total: 7.01 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.10 Total: -61.83 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.30 Total: -16.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.69 -6.46 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986447469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.983 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds