Wall clock time and date at job start Tue Mar 31 2020 14:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00148 * 2 1 4 4 C 1.50695 * 109.46913 * 179.97438 * 3 2 1 5 5 N 1.30450 * 125.99340 * 270.04165 * 4 3 2 6 6 N 1.39931 * 108.90209 * 179.97438 * 5 4 3 7 7 C 1.46497 * 125.75343 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.49240 * 359.74680 * 6 5 4 9 9 C 1.38049 * 107.41229 * 0.39767 * 8 6 5 10 10 C 1.47433 * 126.41197 * 179.87253 * 9 8 6 11 11 O 1.21600 * 119.99956 * 188.26387 * 10 9 8 12 12 N 1.34775 * 119.99813 * 8.26138 * 10 9 8 13 13 C 1.47738 * 125.82352 * 358.66012 * 12 10 9 14 14 C 1.54911 * 104.90390 * 155.98662 * 13 12 10 15 15 C 1.55158 * 101.57776 * 36.95487 * 14 13 12 16 16 H 1.09003 * 110.87226 * 82.93709 * 15 14 13 17 17 N 1.46504 * 110.71664 * 206.13475 * 15 14 13 18 18 C 1.36934 * 119.99934 * 268.52476 * 17 15 14 19 19 H 1.08003 * 120.00319 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00279 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99765 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00480 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46857 * 89.99321 * 22 20 18 24 24 H 1.48494 * 109.47324 * 209.99737 * 22 20 18 25 25 H 1.48497 * 109.46921 * 329.99793 * 22 20 18 26 26 C 1.47032 * 125.64450 * 178.65245 * 12 10 9 27 27 H 1.08996 * 109.88269 * 300.42490 * 26 12 10 28 28 C 1.52997 * 109.87985 * 61.44148 * 26 12 10 29 29 H 1.09007 * 109.46851 * 59.99868 * 1 2 3 30 30 H 1.08994 * 109.47463 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47270 * 300.00443 * 1 2 3 32 32 H 1.08998 * 109.47187 * 59.99793 * 3 2 1 33 33 H 1.09002 * 109.46670 * 299.99792 * 3 2 1 34 34 H 1.09009 * 109.46843 * 89.97801 * 7 6 5 35 35 H 1.09005 * 109.46999 * 209.97244 * 7 6 5 36 36 H 1.08993 * 109.47590 * 329.97595 * 7 6 5 37 37 H 1.07988 * 126.29670 * 180.24429 * 8 6 5 38 38 H 1.09001 * 110.37918 * 37.09647 * 13 12 10 39 39 H 1.09006 * 110.37872 * 274.87528 * 13 12 10 40 40 H 1.09001 * 111.00312 * 278.88078 * 14 13 12 41 41 H 1.08999 * 111.00214 * 155.02641 * 14 13 12 42 42 H 0.97000 * 119.99950 * 88.52568 * 17 15 14 43 43 H 0.97001 * 119.99509 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.47053 * 178.28364 * 28 26 12 45 45 H 1.09001 * 109.47320 * 298.27616 * 28 26 12 46 46 H 1.08995 * 109.47600 * 58.27966 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2763 1.1252 1.0564 6 7 5.6097 1.0192 0.6457 7 6 6.7733 0.9267 1.5310 8 6 5.6426 1.0113 -0.6965 9 6 4.3407 1.1207 -1.1423 10 6 3.8969 1.1560 -2.5478 11 8 2.7367 1.4056 -2.8130 12 7 4.7772 0.9116 -3.5386 13 6 6.2159 0.6236 -3.3656 14 6 6.6205 -0.1629 -4.6374 15 6 5.7698 0.5448 -5.7250 16 1 6.2630 1.4519 -6.0746 17 7 5.5019 -0.3615 -6.8445 18 6 6.3523 -0.3944 -7.9173 19 1 7.2202 0.2479 -7.9384 20 6 6.0982 -1.2527 -8.9783 21 7 5.0402 -2.0353 -8.9528 22 14 7.2578 -1.2972 -10.4421 23 1 8.3191 -2.3079 -10.2023 24 1 6.4973 -1.6586 -11.6653 25 1 7.8789 0.0395 -10.6224 26 6 4.4651 0.8868 -4.9752 27 1 3.7110 0.1263 -5.1777 28 6 3.9534 2.2583 -5.4202 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.9801 -0.1207 1.7510 35 1 7.6388 1.3729 1.0412 36 1 6.5667 1.4591 2.4594 37 1 6.5254 0.9360 -1.3139 38 1 6.3769 0.0150 -2.4759 39 1 6.7832 1.5519 -3.2970 40 1 6.3469 -1.2143 -4.5501 41 1 7.6856 -0.0535 -4.8420 42 1 4.7222 -0.9382 -6.8257 43 1 4.8629 -2.6353 -9.6941 44 1 3.7531 2.2413 -6.4915 45 1 3.0353 2.4955 -4.8827 46 1 4.7072 3.0152 -5.2034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986447469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:58 Heat of formation + Delta-G solvation = 6.244718 kcal Electronic energy + Delta-G solvation = -27864.262371 eV Core-core repulsion = 23984.024231 eV Total energy + Delta-G solvation = -3880.238140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.59815 -40.82660 -38.88139 -38.48784 -35.90588 -34.60634 -33.61126 -32.47643 -31.50380 -30.34629 -29.89311 -27.47694 -26.90689 -26.17485 -24.93548 -24.36484 -22.48274 -22.01128 -21.03513 -20.23221 -19.13515 -17.94890 -17.67121 -17.54315 -17.05062 -16.73397 -16.52744 -16.39372 -16.18846 -15.89450 -15.36295 -15.33728 -14.82891 -14.70042 -14.40612 -14.01472 -13.72658 -13.57624 -13.45206 -13.34156 -13.23965 -13.10416 -12.98558 -12.83514 -12.57639 -12.44219 -12.33241 -12.11959 -12.09248 -11.94863 -11.68519 -11.48712 -10.99266 -10.86619 -10.56259 -10.53353 -9.85737 -9.52034 -8.99217 -7.90782 -5.20709 0.48780 0.83854 1.36938 1.51563 1.53064 1.61318 1.99741 2.35012 2.60492 2.97795 3.34041 3.41518 3.61478 3.67158 3.78021 3.92595 3.99532 4.13478 4.21413 4.26359 4.35849 4.39308 4.40653 4.44030 4.46579 4.50219 4.54952 4.56789 4.67193 4.73199 4.73975 4.80878 4.81431 4.94798 5.10775 5.21474 5.26530 5.28240 5.41799 5.51816 5.58578 5.84824 6.12355 6.29320 6.41621 6.64427 7.25348 7.35656 8.08316 8.31906 9.32886 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.003061 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.418958 B = 9145.556944 C =10132.505220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.411 6.411 3 C 0.141 3.859 4 C 0.108 3.892 5 N -0.304 5.304 6 N -0.351 5.351 7 C 0.083 3.917 8 C 0.108 3.892 9 C -0.299 4.299 10 C 0.602 3.398 11 O -0.581 6.581 12 N -0.607 5.607 13 C 0.091 3.909 14 C -0.147 4.147 15 C 0.171 3.829 16 H 0.077 0.923 17 N -0.729 5.729 18 C -0.234 4.234 19 H 0.086 0.914 20 C -0.077 4.077 21 N -0.973 5.973 22 Si 0.973 3.027 23 H -0.287 1.287 24 H -0.303 1.303 25 H -0.265 1.265 26 C 0.135 3.865 27 H 0.039 0.961 28 C -0.143 4.143 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.236 0.764 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 9.177 23.460 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.330 6.330 3 C 0.063 3.937 4 C -0.059 4.059 5 N -0.128 5.128 6 N -0.130 5.130 7 C -0.056 4.056 8 C -0.044 4.044 9 C -0.314 4.314 10 C 0.394 3.606 11 O -0.463 6.463 12 N -0.340 5.340 13 C -0.031 4.031 14 C -0.188 4.188 15 C 0.062 3.938 16 H 0.095 0.905 17 N -0.368 5.368 18 C -0.366 4.366 19 H 0.104 0.896 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.230 1.230 25 H -0.190 1.190 26 C 0.030 3.970 27 H 0.057 0.943 28 C -0.201 4.201 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.252 0.748 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.676 9.203 24.659 26.732 hybrid contribution -0.526 -0.557 -2.030 2.170 sum 4.151 8.646 22.629 24.577 Atomic orbital electron populations 1.22918 0.78817 1.03899 1.00990 1.87849 1.21958 1.27511 1.95655 1.20702 0.85151 0.85578 1.02301 1.22070 0.96089 0.98031 0.89661 1.77055 0.88124 1.25005 1.22586 1.48807 1.06261 1.52239 1.05656 1.22534 0.82873 1.05467 0.94688 1.24375 0.99439 0.95234 0.85339 1.20147 0.94019 1.24213 0.92996 1.17184 0.83949 0.75832 0.83670 1.90675 1.19185 1.52074 1.84334 1.48393 1.10613 1.69613 1.05346 1.23025 0.79757 1.01047 0.99242 1.23399 1.01762 0.99128 0.94493 1.21457 0.91933 0.93328 0.87130 0.90501 1.42548 1.29719 1.45947 1.18606 1.19651 1.03978 1.17155 0.95802 0.89602 1.25583 0.99813 0.99770 1.01768 1.69847 1.30193 1.28942 1.33347 0.85141 0.77815 0.78104 0.78689 1.21428 1.22981 1.18992 1.21639 0.97817 0.97426 0.80120 0.94254 1.21926 1.01369 0.95964 1.00860 0.93922 0.88481 0.91943 0.90371 0.90598 0.88687 0.85209 0.88231 0.74847 0.88140 0.87506 0.92831 0.88435 0.79859 0.94215 0.92497 0.93046 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -12.58 10.69 -148.98 -1.59 -14.17 16 3 C 0.14 3.99 6.06 71.23 0.43 4.42 16 4 C 0.11 3.17 6.89 43.51 0.30 3.47 16 5 N -0.30 -7.85 12.50 -46.68 -0.58 -8.43 16 6 N -0.35 -6.19 3.98 -367.78 -1.46 -7.65 16 7 C 0.08 0.49 11.44 127.77 1.46 1.96 16 8 C 0.11 1.96 9.82 84.28 0.83 2.79 16 9 C -0.30 -8.35 6.07 -20.15 -0.12 -8.47 16 10 C 0.60 20.29 7.64 86.67 0.66 20.95 16 11 O -0.58 -23.63 13.88 -4.03 -0.06 -23.69 16 12 N -0.61 -18.44 3.08 -791.07 -2.43 -20.88 16 13 C 0.09 1.90 5.28 86.80 0.46 2.36 16 14 C -0.15 -4.21 6.77 31.99 0.22 -4.00 16 15 C 0.17 6.25 3.14 46.18 0.15 6.39 16 16 H 0.08 2.68 7.80 -2.39 -0.02 2.66 16 17 N -0.73 -35.42 5.22 -317.32 -1.66 -37.07 16 18 C -0.23 -12.31 9.96 84.03 0.84 -11.47 16 19 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 21 N -0.97 -59.33 13.06 21.65 0.28 -59.04 16 22 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 C 0.13 4.85 3.21 45.34 0.15 5.00 16 27 H 0.04 1.71 7.72 -2.39 -0.02 1.69 16 28 C -0.14 -4.87 9.10 71.98 0.65 -4.22 16 29 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.35 6.42 -2.39 -0.02 2.34 16 34 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.13 -0.13 8.14 -2.38 -0.02 -0.15 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.24 2.22 4.75 -2.92 -0.01 2.21 16 38 H 0.10 1.58 5.31 -2.39 -0.01 1.57 16 39 H 0.11 1.51 8.03 -2.38 -0.02 1.49 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.37 20.17 7.56 -92.71 -0.70 19.47 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 1.86 6.83 -2.39 -0.02 1.85 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -79.92 375.31 2.56 -77.37 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.30 Total: 29.45 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.73 Total: 17.22 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -5.86 Total: -133.08 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.65 Total: -37.86 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -79.92 2.56 -77.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986447469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.613 kcal (2) G-P(sol) polarization free energy of solvation -79.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds