Wall clock time and date at job start Tue Mar 31 2020 14:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00197 * 2 1 4 4 C 1.50699 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.30444 * 125.98978 * 90.02321 * 4 3 2 6 6 N 1.39936 * 108.89622 * 179.97438 * 5 4 3 7 7 C 1.46500 * 125.75313 * 179.97438 * 6 5 4 8 8 C 1.34252 * 108.49289 * 0.22885 * 6 5 4 9 9 C 1.38046 * 107.41742 * 359.64069 * 8 6 5 10 10 C 1.47430 * 126.41504 * 180.13715 * 9 8 6 11 11 O 1.21601 * 119.99691 * 146.40698 * 10 9 8 12 12 N 1.34772 * 120.00291 * 326.40191 * 10 9 8 13 13 C 1.47432 * 125.64546 * 4.37695 * 12 10 9 14 14 C 1.54910 * 104.83062 * 204.08875 * 13 12 10 15 15 C 1.55164 * 101.58099 * 322.98774 * 14 13 12 16 16 H 1.08996 * 110.72063 * 277.14216 * 15 14 13 17 17 N 1.46498 * 110.71645 * 153.86513 * 15 14 13 18 18 C 1.36937 * 119.99932 * 86.45501 * 17 15 14 19 19 H 1.07994 * 119.99863 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00161 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99673 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46967 * 90.00077 * 22 20 18 24 24 H 1.48499 * 109.47394 * 210.00245 * 22 20 18 25 25 H 1.48500 * 109.46865 * 330.00421 * 22 20 18 26 26 C 1.47022 * 125.65126 * 184.06380 * 12 10 9 27 27 H 1.08999 * 109.87966 * 298.39814 * 26 12 10 28 28 C 1.53000 * 109.88352 * 59.56256 * 26 12 10 29 29 H 1.08997 * 109.47526 * 59.99886 * 1 2 3 30 30 H 1.08997 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46518 * 299.99705 * 1 2 3 32 32 H 1.08998 * 109.46965 * 60.00311 * 3 2 1 33 33 H 1.09010 * 109.47063 * 300.00488 * 3 2 1 34 34 H 1.09001 * 109.47144 * 90.02435 * 7 6 5 35 35 H 1.09006 * 109.47313 * 330.02798 * 7 6 5 36 36 H 1.09001 * 109.47018 * 210.02746 * 7 6 5 37 37 H 1.08000 * 126.29136 * 179.74023 * 8 6 5 38 38 H 1.09003 * 110.36667 * 322.92646 * 13 12 10 39 39 H 1.08999 * 110.36587 * 85.25152 * 13 12 10 40 40 H 1.08999 * 111.00486 * 81.06200 * 14 13 12 41 41 H 1.08994 * 111.00417 * 204.87704 * 14 13 12 42 42 H 0.97008 * 120.00041 * 266.45505 * 17 15 14 43 43 H 0.97002 * 120.00118 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47076 * 58.54622 * 28 26 12 45 45 H 1.08997 * 109.47206 * 178.54371 * 28 26 12 46 46 H 1.09000 * 109.46827 * 298.55327 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2763 1.1265 -1.0564 6 7 5.6099 1.0212 -0.6457 7 6 6.7735 0.9291 -1.5309 8 6 5.6427 1.0131 0.6964 9 6 4.3406 1.1207 1.1423 10 6 3.8968 1.1553 2.5478 11 8 2.9288 1.8200 2.8635 12 7 4.5640 0.4501 3.4827 13 6 5.8003 -0.3209 3.2575 14 6 5.8105 -1.3902 4.3783 15 6 5.2196 -0.5952 5.5726 16 1 5.9934 -0.0053 6.0638 17 7 4.5708 -1.4985 6.5262 18 6 5.3077 -2.0957 7.5138 19 1 6.3671 -1.9005 7.5900 20 6 4.6929 -2.9512 8.4176 21 7 3.4016 -3.1888 8.3250 22 14 5.6979 -3.7654 9.7653 23 1 5.7042 -2.8980 10.9707 24 1 5.0975 -5.0804 10.1049 25 1 7.0912 -3.9648 9.2918 26 6 4.1830 0.3274 4.8973 27 1 4.1938 1.3093 5.3706 28 6 2.7883 -0.2918 5.0089 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6887 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 7.1433 1.9308 -1.7503 35 1 6.4854 0.4367 -2.4598 36 1 7.5576 0.3514 -1.0415 37 1 6.5256 0.9380 1.3138 38 1 5.7766 -0.7983 2.2779 39 1 6.6725 0.3272 3.3436 40 1 5.1732 -2.2352 4.1179 41 1 6.8264 -1.7214 4.5931 42 1 3.6191 -1.6736 6.4579 43 1 2.9719 -3.7869 8.9564 44 1 2.7855 -1.2698 4.5277 45 1 2.5234 -0.4034 6.0602 46 1 2.0626 0.3567 4.5180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986447470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:02 Heat of formation + Delta-G solvation = 29.737152 kcal Electronic energy + Delta-G solvation = -28071.574951 eV Core-core repulsion = 24192.355519 eV Total energy + Delta-G solvation = -3879.219432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62268 -39.60095 -37.84481 -37.22343 -34.17312 -33.81681 -31.94338 -30.75781 -30.38595 -29.13775 -28.61619 -26.65542 -25.27286 -25.18876 -23.61362 -23.08452 -21.56717 -20.68131 -19.43999 -18.68231 -17.51825 -17.06603 -16.57896 -16.36713 -15.83385 -15.76244 -15.37592 -15.33720 -15.06096 -14.52559 -14.13491 -13.81028 -13.63006 -13.37467 -13.13659 -12.94225 -12.75636 -12.43908 -12.38935 -12.26848 -11.97995 -11.70503 -11.50628 -11.44439 -11.17428 -11.02858 -10.96417 -10.79337 -10.43763 -10.19855 -9.97522 -9.84003 -9.68413 -9.65748 -9.43025 -8.93913 -8.79054 -8.29825 -7.00551 -5.80192 -3.09886 1.41906 1.94218 2.10529 3.14986 3.41830 3.45492 3.48533 3.48996 3.84927 4.23301 4.44832 4.56293 4.70637 4.76434 4.87788 4.96367 5.02775 5.07598 5.21019 5.32313 5.34590 5.38122 5.39285 5.43963 5.56679 5.59131 5.63552 5.67653 5.71375 5.86925 6.09520 6.13996 6.21351 6.27948 6.36867 6.57319 6.58523 6.62535 6.78252 6.89875 7.04382 7.04634 7.37415 7.67190 7.86158 8.38238 8.48888 9.49946 10.05717 10.40669 11.42306 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003222 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.665097 B = 8687.370928 C = 9720.196032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.137 3.863 4 C 0.126 3.874 5 N -0.282 5.282 6 N -0.362 5.362 7 C 0.098 3.902 8 C 0.092 3.908 9 C -0.260 4.260 10 C 0.609 3.391 11 O -0.543 6.543 12 N -0.604 5.604 13 C 0.094 3.906 14 C -0.153 4.153 15 C 0.174 3.826 16 H 0.062 0.938 17 N -0.717 5.717 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.131 3.869 27 H 0.072 0.928 28 C -0.158 4.158 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.187 0.813 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.391 0.609 43 H 0.256 0.744 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 9.164 -20.230 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.059 3.941 4 C -0.041 4.041 5 N -0.105 5.105 6 N -0.141 5.141 7 C -0.043 4.043 8 C -0.058 4.058 9 C -0.275 4.275 10 C 0.398 3.602 11 O -0.421 6.421 12 N -0.337 5.337 13 C -0.029 4.029 14 C -0.194 4.194 15 C 0.062 3.938 16 H 0.080 0.920 17 N -0.361 5.361 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.028 3.972 27 H 0.090 0.910 28 C -0.216 4.216 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.203 0.797 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.230 0.770 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.395 9.297 -21.336 23.685 hybrid contribution 0.352 -0.468 1.492 1.602 sum 4.747 8.829 -19.845 22.233 Atomic orbital electron populations 1.22754 0.80357 1.02985 1.00153 1.87916 1.20051 1.26670 1.95522 1.20740 0.85022 0.85842 1.02516 1.21849 0.95512 0.97668 0.89102 1.77117 0.86434 1.24458 1.22532 1.48272 1.06197 1.54756 1.04875 1.21996 0.83915 1.03667 0.94745 1.23238 0.99163 0.98474 0.84910 1.20208 0.92342 1.20414 0.94527 1.16790 0.82143 0.78514 0.82774 1.90714 1.27826 1.42261 1.81335 1.48407 1.26488 1.49010 1.09819 1.22490 0.86472 0.93796 1.00153 1.23548 1.02307 0.97755 0.95815 1.21175 0.92731 0.90512 0.89385 0.91995 1.42675 1.09436 1.51800 1.32176 1.19232 0.92420 1.20506 1.05351 0.91093 1.24752 0.95846 1.00508 0.99585 1.69660 1.08701 1.40500 1.38962 0.86184 0.79038 0.78732 0.82149 1.21691 1.21796 1.20757 1.21809 0.96394 0.99438 0.79595 0.90979 1.21988 0.95795 1.00695 1.03088 0.94118 0.89423 0.93486 0.89137 0.91846 0.90262 0.88840 0.88900 0.79651 0.91325 0.91901 0.90600 0.90674 0.77041 0.93383 0.92459 0.90289 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.65 10.69 -35.23 -0.38 -6.03 16 3 C 0.14 1.88 6.29 36.01 0.23 2.11 16 4 C 0.13 1.86 6.89 -82.02 -0.56 1.30 16 5 N -0.28 -3.86 12.50 33.89 0.42 -3.44 16 6 N -0.36 -3.78 3.98 -67.60 -0.27 -4.05 16 7 C 0.10 0.51 11.44 59.85 0.68 1.19 16 8 C 0.09 1.00 9.55 -16.56 -0.16 0.84 16 9 C -0.26 -3.78 5.68 -105.07 -0.60 -4.38 16 10 C 0.61 10.28 7.42 -12.52 -0.09 10.19 16 11 O -0.54 -10.56 14.53 5.28 0.08 -10.49 16 12 N -0.60 -9.66 3.08 -164.26 -0.51 -10.17 16 13 C 0.09 1.23 5.35 -2.52 -0.01 1.22 16 14 C -0.15 -2.49 6.77 -24.58 -0.17 -2.66 16 15 C 0.17 3.32 3.45 -66.09 -0.23 3.09 16 16 H 0.06 1.17 8.12 -51.93 -0.42 0.74 16 17 N -0.72 -17.32 5.02 -51.65 -0.26 -17.58 16 18 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 22 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 C 0.13 2.36 3.47 -66.95 -0.23 2.13 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 C -0.16 -3.05 7.94 37.16 0.29 -2.75 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.09 1.31 6.61 -51.93 -0.34 0.97 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.19 1.39 6.42 -52.49 -0.34 1.05 16 38 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 39 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.39 10.05 4.94 -40.82 -0.20 9.85 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 45 H 0.08 1.64 6.73 -51.93 -0.35 1.29 16 46 H 0.06 1.15 6.88 -51.93 -0.36 0.80 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -34.77 374.05 -6.50 -41.27 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.94 Total: 8.15 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 0.02 Total: 6.70 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.11 Total: -62.08 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.30 Total: -16.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.77 -6.50 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986447470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.003 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds