Wall clock time and date at job start Tue Mar 31 2020 14:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00197 * 2 1 4 4 C 1.50699 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.30444 * 125.98978 * 90.02321 * 4 3 2 6 6 N 1.39936 * 108.89622 * 179.97438 * 5 4 3 7 7 C 1.46500 * 125.75313 * 179.97438 * 6 5 4 8 8 C 1.34252 * 108.49289 * 0.22885 * 6 5 4 9 9 C 1.38046 * 107.41742 * 359.64069 * 8 6 5 10 10 C 1.47430 * 126.41504 * 180.13715 * 9 8 6 11 11 O 1.21601 * 119.99691 * 146.40698 * 10 9 8 12 12 N 1.34772 * 120.00291 * 326.40191 * 10 9 8 13 13 C 1.47432 * 125.64546 * 4.37695 * 12 10 9 14 14 C 1.54910 * 104.83062 * 204.08875 * 13 12 10 15 15 C 1.55164 * 101.58099 * 322.98774 * 14 13 12 16 16 H 1.08996 * 110.72063 * 277.14216 * 15 14 13 17 17 N 1.46498 * 110.71645 * 153.86513 * 15 14 13 18 18 C 1.36937 * 119.99932 * 86.45501 * 17 15 14 19 19 H 1.07994 * 119.99863 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00161 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99673 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46967 * 90.00077 * 22 20 18 24 24 H 1.48499 * 109.47394 * 210.00245 * 22 20 18 25 25 H 1.48500 * 109.46865 * 330.00421 * 22 20 18 26 26 C 1.47022 * 125.65126 * 184.06380 * 12 10 9 27 27 H 1.08999 * 109.87966 * 298.39814 * 26 12 10 28 28 C 1.53000 * 109.88352 * 59.56256 * 26 12 10 29 29 H 1.08997 * 109.47526 * 59.99886 * 1 2 3 30 30 H 1.08997 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46518 * 299.99705 * 1 2 3 32 32 H 1.08998 * 109.46965 * 60.00311 * 3 2 1 33 33 H 1.09010 * 109.47063 * 300.00488 * 3 2 1 34 34 H 1.09001 * 109.47144 * 90.02435 * 7 6 5 35 35 H 1.09006 * 109.47313 * 330.02798 * 7 6 5 36 36 H 1.09001 * 109.47018 * 210.02746 * 7 6 5 37 37 H 1.08000 * 126.29136 * 179.74023 * 8 6 5 38 38 H 1.09003 * 110.36667 * 322.92646 * 13 12 10 39 39 H 1.08999 * 110.36587 * 85.25152 * 13 12 10 40 40 H 1.08999 * 111.00486 * 81.06200 * 14 13 12 41 41 H 1.08994 * 111.00417 * 204.87704 * 14 13 12 42 42 H 0.97008 * 120.00041 * 266.45505 * 17 15 14 43 43 H 0.97002 * 120.00118 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47076 * 58.54622 * 28 26 12 45 45 H 1.08997 * 109.47206 * 178.54371 * 28 26 12 46 46 H 1.09000 * 109.46827 * 298.55327 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2763 1.1265 -1.0564 6 7 5.6099 1.0212 -0.6457 7 6 6.7735 0.9291 -1.5309 8 6 5.6427 1.0131 0.6964 9 6 4.3406 1.1207 1.1423 10 6 3.8968 1.1553 2.5478 11 8 2.9288 1.8200 2.8635 12 7 4.5640 0.4501 3.4827 13 6 5.8003 -0.3209 3.2575 14 6 5.8105 -1.3902 4.3783 15 6 5.2196 -0.5952 5.5726 16 1 5.9934 -0.0053 6.0638 17 7 4.5708 -1.4985 6.5262 18 6 5.3077 -2.0957 7.5138 19 1 6.3671 -1.9005 7.5900 20 6 4.6929 -2.9512 8.4176 21 7 3.4016 -3.1888 8.3250 22 14 5.6979 -3.7654 9.7653 23 1 5.7042 -2.8980 10.9707 24 1 5.0975 -5.0804 10.1049 25 1 7.0912 -3.9648 9.2918 26 6 4.1830 0.3274 4.8973 27 1 4.1938 1.3093 5.3706 28 6 2.7883 -0.2918 5.0089 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6887 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 7.1433 1.9308 -1.7503 35 1 6.4854 0.4367 -2.4598 36 1 7.5576 0.3514 -1.0415 37 1 6.5256 0.9380 1.3138 38 1 5.7766 -0.7983 2.2779 39 1 6.6725 0.3272 3.3436 40 1 5.1732 -2.2352 4.1179 41 1 6.8264 -1.7214 4.5931 42 1 3.6191 -1.6736 6.4579 43 1 2.9719 -3.7869 8.9564 44 1 2.7855 -1.2698 4.5277 45 1 2.5234 -0.4034 6.0602 46 1 2.0626 0.3567 4.5180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986447470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:01 Heat of formation + Delta-G solvation = 4.474924 kcal Electronic energy + Delta-G solvation = -28072.670403 eV Core-core repulsion = 24192.355519 eV Total energy + Delta-G solvation = -3880.314884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.56252 -40.90446 -38.89931 -38.58250 -35.90131 -34.61515 -33.59059 -32.20219 -31.63196 -30.22418 -29.89434 -27.47804 -26.78895 -26.24293 -25.33429 -24.32014 -22.62290 -21.79651 -20.59929 -20.01821 -19.39296 -18.23138 -17.55904 -17.44545 -17.01459 -16.79525 -16.55694 -16.40958 -16.18338 -16.03609 -15.66692 -15.25861 -14.83393 -14.67831 -14.29744 -13.89485 -13.70857 -13.57841 -13.53412 -13.26894 -13.20555 -13.05174 -12.96754 -12.88611 -12.83675 -12.50863 -12.36274 -12.06756 -11.99942 -11.97531 -11.56648 -11.49660 -10.97683 -10.88818 -10.63615 -10.53305 -9.80308 -9.53634 -8.97388 -7.90098 -5.19110 0.55267 0.88320 1.37923 1.51703 1.53223 1.61318 1.91082 2.28354 2.61153 2.93080 3.35577 3.42960 3.64167 3.70725 3.80615 3.96930 3.98803 4.10303 4.19988 4.25306 4.36011 4.40135 4.42574 4.43038 4.47799 4.49394 4.53174 4.59601 4.68916 4.73580 4.76292 4.80252 4.80744 4.90663 5.08984 5.20952 5.23262 5.29239 5.39123 5.55511 5.59256 5.87305 6.08440 6.31365 6.43394 6.63382 7.22464 7.38516 8.12951 8.36056 9.33838 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003222 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.665097 B = 8687.370928 C = 9720.196032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.138 3.862 4 C 0.106 3.894 5 N -0.303 5.303 6 N -0.351 5.351 7 C 0.084 3.916 8 C 0.119 3.881 9 C -0.297 4.297 10 C 0.607 3.393 11 O -0.581 6.581 12 N -0.604 5.604 13 C 0.100 3.900 14 C -0.144 4.144 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.734 5.734 18 C -0.236 4.236 19 H 0.084 0.916 20 C -0.077 4.077 21 N -0.973 5.973 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.301 1.301 25 H -0.264 1.264 26 C 0.137 3.863 27 H 0.069 0.931 28 C -0.143 4.143 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.228 0.772 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.379 0.621 43 H 0.249 0.751 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 9.567 -21.982 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.060 3.940 4 C -0.061 4.061 5 N -0.127 5.127 6 N -0.130 5.130 7 C -0.054 4.054 8 C -0.033 4.033 9 C -0.312 4.312 10 C 0.397 3.603 11 O -0.463 6.463 12 N -0.337 5.337 13 C -0.022 4.022 14 C -0.185 4.185 15 C 0.057 3.943 16 H 0.091 0.909 17 N -0.376 5.376 18 C -0.368 4.368 19 H 0.102 0.898 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.802 3.198 23 H -0.218 1.218 24 H -0.228 1.228 25 H -0.189 1.189 26 C 0.033 3.967 27 H 0.087 0.913 28 C -0.201 4.201 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.244 0.756 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.215 0.785 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.079 9.722 -23.162 26.387 hybrid contribution -0.717 -0.531 1.907 2.106 sum 7.363 9.191 -21.255 24.299 Atomic orbital electron populations 1.22941 0.78763 1.03982 1.01083 1.87865 1.21989 1.27435 1.95674 1.20713 0.85364 0.85521 1.02433 1.21996 0.95940 0.98456 0.89691 1.77055 0.88068 1.25095 1.22496 1.48731 1.06197 1.52516 1.05549 1.22512 0.82721 1.05625 0.94564 1.23706 0.98823 0.95524 0.85279 1.20097 0.94221 1.23964 0.92910 1.17179 0.81529 0.77811 0.83736 1.90686 1.29533 1.43969 1.82064 1.48397 1.27510 1.49225 1.08569 1.22697 0.86478 0.93241 0.99735 1.23356 1.02331 0.97444 0.95356 1.21397 0.92900 0.90403 0.89607 0.90931 1.42878 1.09081 1.52666 1.33015 1.19678 0.93061 1.19098 1.04947 0.89786 1.25562 0.96823 1.02181 1.02371 1.69834 1.10494 1.41893 1.40114 0.85141 0.78289 0.77005 0.79316 1.21758 1.22847 1.18898 1.21566 0.95026 0.98777 0.81314 0.91296 1.21798 0.97124 0.99861 1.01316 0.91866 0.88437 0.93855 0.90880 0.90139 0.88344 0.88562 0.85432 0.75596 0.89281 0.87507 0.93238 0.88802 0.78470 0.94201 0.93846 0.92353 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -12.40 10.69 -148.98 -1.59 -13.99 16 3 C 0.14 3.89 6.29 71.24 0.45 4.33 16 4 C 0.11 3.07 6.89 43.52 0.30 3.37 16 5 N -0.30 -7.78 12.50 -46.68 -0.58 -8.37 16 6 N -0.35 -6.09 3.98 -367.77 -1.46 -7.55 16 7 C 0.08 0.49 11.44 127.77 1.46 1.95 16 8 C 0.12 2.10 9.55 84.28 0.80 2.91 16 9 C -0.30 -8.17 5.68 -20.15 -0.11 -8.29 16 10 C 0.61 20.17 7.42 86.67 0.64 20.81 16 11 O -0.58 -23.29 14.53 -4.03 -0.06 -23.35 16 12 N -0.60 -18.44 3.08 -791.85 -2.44 -20.88 16 13 C 0.10 2.23 5.35 86.85 0.46 2.70 16 14 C -0.14 -4.34 6.77 31.99 0.22 -4.12 16 15 C 0.17 6.18 3.45 46.19 0.16 6.34 16 16 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 17 N -0.73 -35.74 5.02 -317.31 -1.59 -37.33 16 18 C -0.24 -12.52 9.98 84.03 0.84 -11.68 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -59.29 13.06 21.65 0.28 -59.00 16 22 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 26 C 0.14 4.94 3.47 45.35 0.16 5.10 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 C -0.14 -5.79 7.94 71.98 0.57 -5.22 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 2.26 6.61 -2.39 -0.02 2.25 16 33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.23 1.92 6.42 -2.91 -0.02 1.90 16 38 H 0.09 1.69 6.56 -2.39 -0.02 1.68 16 39 H 0.11 1.54 7.71 -2.39 -0.02 1.52 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.38 20.20 4.94 -92.70 -0.46 19.75 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 44 H 0.04 1.83 8.05 -2.39 -0.02 1.81 16 45 H 0.06 2.58 6.73 -2.39 -0.02 2.56 16 46 H 0.05 2.21 6.88 -2.39 -0.02 2.19 16 Total: -1.00 -79.33 374.05 2.78 -76.54 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.54 Total: 30.61 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 7.67 Total: 16.18 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -5.80 Total: -133.13 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.65 Total: -37.34 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.33 2.78 -76.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986447470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.020 kcal (2) G-P(sol) polarization free energy of solvation -79.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds