Wall clock time and date at job start Tue Mar 31 2020 14:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00139 * 2 1 4 4 C 1.50703 * 109.47073 * 179.97438 * 3 2 1 5 5 N 1.30441 * 125.99020 * 270.04233 * 4 3 2 6 6 N 1.39937 * 108.89843 * 179.97438 * 5 4 3 7 7 C 1.46501 * 125.75639 * 179.97438 * 6 5 4 8 8 C 1.34260 * 108.48918 * 359.75213 * 6 5 4 9 9 C 1.38039 * 107.41918 * 0.39622 * 8 6 5 10 10 C 1.47426 * 126.41630 * 179.87250 * 9 8 6 11 11 O 1.21603 * 119.99942 * 188.36250 * 10 9 8 12 12 N 1.34769 * 120.00150 * 8.36138 * 10 9 8 13 13 C 1.47431 * 125.64937 * 358.62442 * 12 10 9 14 14 C 1.54905 * 104.83216 * 155.90745 * 13 12 10 15 15 C 1.55159 * 101.58409 * 37.00999 * 14 13 12 16 16 H 1.09012 * 110.71883 * 83.03819 * 15 14 13 17 17 N 1.46498 * 110.72112 * 206.12937 * 15 14 13 18 18 C 1.36927 * 120.00400 * 273.54544 * 17 15 14 19 19 H 1.08007 * 119.99960 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00113 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99946 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99872 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46989 * 269.99936 * 22 20 18 24 24 H 1.48504 * 109.47155 * 149.99963 * 22 20 18 25 25 H 1.48500 * 109.47214 * 29.99796 * 22 20 18 26 26 C 1.47029 * 125.64857 * 178.66918 * 12 10 9 27 27 H 1.08999 * 109.88455 * 61.60828 * 26 12 10 28 28 C 1.52996 * 109.87875 * 300.43803 * 26 12 10 29 29 H 1.08994 * 109.46702 * 300.00337 * 1 2 3 30 30 H 1.08998 * 109.46666 * 59.99660 * 1 2 3 31 31 H 1.08997 * 109.47355 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47118 * 60.00382 * 3 2 1 33 33 H 1.09000 * 109.47661 * 299.99826 * 3 2 1 34 34 H 1.08998 * 109.47221 * 89.97581 * 7 6 5 35 35 H 1.09003 * 109.47499 * 209.97845 * 7 6 5 36 36 H 1.09000 * 109.47063 * 329.97944 * 7 6 5 37 37 H 1.08005 * 126.28804 * 180.23650 * 8 6 5 38 38 H 1.08997 * 110.36131 * 37.06450 * 13 12 10 39 39 H 1.09002 * 110.45433 * 274.79562 * 13 12 10 40 40 H 1.08995 * 111.00547 * 278.93426 * 14 13 12 41 41 H 1.09008 * 111.00391 * 155.08196 * 14 13 12 42 42 H 0.97003 * 119.99443 * 93.54918 * 17 15 14 43 43 H 0.96999 * 120.00139 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.47295 * 302.19209 * 28 26 12 45 45 H 1.08995 * 109.47125 * 62.19683 * 28 26 12 46 46 H 1.09003 * 109.46569 * 182.19339 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2762 1.1252 1.0564 6 7 5.6098 1.0192 0.6457 7 6 6.7734 0.9268 1.5309 8 6 5.6426 1.0115 -0.6965 9 6 4.3407 1.1209 -1.1423 10 6 3.8970 1.1562 -2.5478 11 8 2.7372 1.4076 -2.8130 12 7 4.7767 0.9100 -3.5386 13 6 6.2117 0.6215 -3.3616 14 6 6.6167 -0.1688 -4.6308 15 6 5.7699 0.5384 -5.7217 16 1 6.2691 1.4421 -6.0719 17 7 5.5020 -0.3696 -6.8397 18 6 6.4061 -0.4827 -7.8618 19 1 7.3171 0.0973 -7.8436 20 6 6.1524 -1.3435 -8.9208 21 7 7.0217 -1.4526 -9.9030 22 14 4.5773 -2.3472 -8.9519 23 1 4.8059 -3.6482 -8.2734 24 1 4.1713 -2.5877 -10.3599 25 1 3.5025 -1.6035 -8.2469 26 6 4.4646 0.8855 -4.9752 27 1 4.1047 1.8640 -5.2931 28 6 3.4039 -0.1799 -5.2590 29 1 -0.3632 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8900 34 1 6.9803 -0.1205 1.7509 35 1 7.6389 1.3731 1.0412 36 1 6.5667 1.4591 2.4594 37 1 6.5256 0.9364 -1.3139 38 1 6.3693 0.0144 -2.4702 39 1 6.7811 1.5485 -3.2940 40 1 6.3403 -1.2194 -4.5417 41 1 7.6825 -0.0627 -4.8336 42 1 4.6840 -0.8908 -6.8558 43 1 6.8447 -2.0544 -10.6428 44 1 3.7646 -1.1511 -4.9203 45 1 2.4854 0.0717 -4.7288 46 1 3.2060 -0.2191 -6.3302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986447472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:08 Heat of formation + Delta-G solvation = 43.613491 kcal Electronic energy + Delta-G solvation = -28099.700340 eV Core-core repulsion = 24221.082631 eV Total energy + Delta-G solvation = -3878.617709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70915 -39.74006 -37.89565 -37.33882 -34.40202 -33.84575 -32.11151 -30.99701 -30.54040 -29.22678 -28.95583 -26.71091 -25.62039 -25.29156 -23.53105 -23.04712 -21.57778 -20.80618 -19.48974 -18.88883 -17.95643 -17.04169 -16.64710 -16.48700 -15.91178 -15.78245 -15.51747 -15.41548 -15.15396 -14.53212 -14.20225 -13.93778 -13.80989 -13.38764 -13.19579 -13.02728 -12.80653 -12.63407 -12.47810 -12.35922 -12.10157 -11.85997 -11.60434 -11.48818 -11.38418 -11.18934 -11.04221 -10.86575 -10.57149 -10.30422 -10.08132 -9.90210 -9.72416 -9.62007 -9.42142 -8.98249 -8.88422 -8.41560 -7.34031 -5.82759 -3.19347 1.33190 1.83804 2.06337 3.12875 3.34983 3.38390 3.43313 3.45283 3.84832 4.16077 4.37969 4.54633 4.65517 4.73754 4.76310 4.88026 4.91324 5.00105 5.13411 5.18087 5.26230 5.27642 5.31363 5.36262 5.39090 5.45315 5.53593 5.57698 5.66047 5.70153 5.85391 5.92192 6.04784 6.15844 6.19021 6.41755 6.47572 6.50693 6.61239 6.65139 6.86345 7.02141 7.32132 7.74852 7.92665 8.36261 8.41412 9.13931 9.86327 10.05279 11.35163 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.003423 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.368692 B = 8177.883427 C = 9406.441081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.140 3.860 4 C 0.129 3.871 5 N -0.284 5.284 6 N -0.361 5.361 7 C 0.096 3.904 8 C 0.083 3.917 9 C -0.265 4.265 10 C 0.608 3.392 11 O -0.542 6.542 12 N -0.606 5.606 13 C 0.085 3.915 14 C -0.153 4.153 15 C 0.179 3.821 16 H 0.072 0.928 17 N -0.741 5.741 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.275 1.275 26 C 0.130 3.870 27 H 0.076 0.924 28 C -0.164 4.164 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.199 0.801 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.368 0.632 43 H 0.260 0.740 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 6.239 23.988 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C 0.062 3.938 4 C -0.039 4.039 5 N -0.107 5.107 6 N -0.140 5.140 7 C -0.044 4.044 8 C -0.067 4.067 9 C -0.279 4.279 10 C 0.398 3.602 11 O -0.420 6.420 12 N -0.340 5.340 13 C -0.038 4.038 14 C -0.194 4.194 15 C 0.068 3.932 16 H 0.090 0.910 17 N -0.386 5.386 18 C -0.378 4.378 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.578 5.578 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.201 1.201 26 C 0.027 3.973 27 H 0.094 0.906 28 C -0.222 4.222 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.216 0.784 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.205 0.795 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.371 6.223 25.084 26.063 hybrid contribution -0.914 -0.712 -0.916 1.477 sum -4.286 5.512 24.168 25.157 Atomic orbital electron populations 1.22729 0.80491 1.02811 1.00114 1.87900 1.19925 1.26701 1.95500 1.20729 0.84877 0.85893 1.02334 1.21905 0.95603 0.97308 0.89092 1.77122 0.86542 1.24383 1.22645 1.48355 1.06238 1.54374 1.05043 1.22017 0.83788 1.03965 0.94670 1.24011 0.99903 0.97835 0.84966 1.20217 0.92184 1.21094 0.94446 1.16783 0.84360 0.76415 0.82653 1.90702 1.17442 1.50238 1.83643 1.48344 1.09194 1.69886 1.06556 1.22757 0.81712 0.99398 0.99963 1.23529 1.01659 1.00204 0.93974 1.21155 0.91161 0.93655 0.87237 0.90989 1.42987 1.23734 1.49573 1.22324 1.19052 1.00291 1.21129 0.97298 0.89046 1.24644 0.97735 0.99657 0.96703 1.69690 1.35804 1.41042 1.11290 0.86669 0.84469 0.80919 0.77136 1.20954 1.21554 1.20097 1.21792 0.97051 0.99499 0.78970 0.90582 1.22085 0.99180 0.98604 1.02352 0.94193 0.93496 0.89599 0.92151 0.88932 0.90082 0.88856 0.88840 0.78432 0.90816 0.91227 0.90617 0.90052 0.79526 0.92954 0.92573 0.91477 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.46 10.69 -35.23 -0.38 -5.84 16 3 C 0.14 1.85 6.06 36.01 0.22 2.07 16 4 C 0.13 1.84 6.89 -82.02 -0.57 1.27 16 5 N -0.28 -3.78 12.50 33.90 0.42 -3.35 16 6 N -0.36 -3.66 3.98 -67.60 -0.27 -3.93 16 7 C 0.10 0.48 11.44 59.85 0.68 1.16 16 8 C 0.08 0.87 9.81 -16.56 -0.16 0.70 16 9 C -0.26 -3.70 6.07 -105.07 -0.64 -4.34 16 10 C 0.61 9.77 7.61 -12.52 -0.10 9.68 16 11 O -0.54 -10.04 13.86 5.27 0.07 -9.97 16 12 N -0.61 -9.04 3.08 -164.27 -0.51 -9.54 16 13 C 0.08 1.00 5.27 -2.53 -0.01 0.98 16 14 C -0.15 -2.28 6.77 -24.58 -0.17 -2.44 16 15 C 0.18 3.22 3.46 -66.09 -0.23 2.99 16 16 H 0.07 1.30 8.12 -51.92 -0.42 0.87 16 17 N -0.74 -16.70 4.82 -51.65 -0.25 -16.95 16 18 C -0.25 -6.67 10.46 -15.06 -0.16 -6.83 16 19 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -28.51 13.97 55.49 0.78 -27.74 16 22 Si 0.88 21.72 27.73 -169.99 -4.71 17.01 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.27 -6.42 6.45 56.52 0.36 -6.05 16 26 C 0.13 2.19 3.47 -66.95 -0.23 1.96 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 C -0.16 -2.92 7.95 37.16 0.30 -2.63 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.29 6.42 -51.93 -0.33 0.95 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.20 1.44 4.75 -52.48 -0.25 1.19 16 38 H 0.07 0.72 5.29 -51.93 -0.27 0.44 16 39 H 0.07 0.66 8.03 -51.93 -0.42 0.25 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 42 H 0.37 8.30 2.79 -40.82 -0.11 8.19 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 44 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 45 H 0.07 1.21 6.81 -51.93 -0.35 0.86 16 46 H 0.07 1.36 6.60 -51.93 -0.34 1.02 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -35.54 367.75 -6.09 -41.64 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.75 Total: 6.93 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.04 Total: 6.20 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.17 Total: -61.51 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.30 Total: -15.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.54 -6.09 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986447472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.250 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds