Wall clock time and date at job start Tue Mar 31 2020 14:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00139 * 2 1 4 4 C 1.50703 * 109.47073 * 179.97438 * 3 2 1 5 5 N 1.30441 * 125.99020 * 270.04233 * 4 3 2 6 6 N 1.39937 * 108.89843 * 179.97438 * 5 4 3 7 7 C 1.46501 * 125.75639 * 179.97438 * 6 5 4 8 8 C 1.34260 * 108.48918 * 359.75213 * 6 5 4 9 9 C 1.38039 * 107.41918 * 0.39622 * 8 6 5 10 10 C 1.47426 * 126.41630 * 179.87250 * 9 8 6 11 11 O 1.21603 * 119.99942 * 188.36250 * 10 9 8 12 12 N 1.34769 * 120.00150 * 8.36138 * 10 9 8 13 13 C 1.47431 * 125.64937 * 358.62442 * 12 10 9 14 14 C 1.54905 * 104.83216 * 155.90745 * 13 12 10 15 15 C 1.55159 * 101.58409 * 37.00999 * 14 13 12 16 16 H 1.09012 * 110.71883 * 83.03819 * 15 14 13 17 17 N 1.46498 * 110.72112 * 206.12937 * 15 14 13 18 18 C 1.36927 * 120.00400 * 273.54544 * 17 15 14 19 19 H 1.08007 * 119.99960 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00113 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99946 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99872 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46989 * 269.99936 * 22 20 18 24 24 H 1.48504 * 109.47155 * 149.99963 * 22 20 18 25 25 H 1.48500 * 109.47214 * 29.99796 * 22 20 18 26 26 C 1.47029 * 125.64857 * 178.66918 * 12 10 9 27 27 H 1.08999 * 109.88455 * 61.60828 * 26 12 10 28 28 C 1.52996 * 109.87875 * 300.43803 * 26 12 10 29 29 H 1.08994 * 109.46702 * 300.00337 * 1 2 3 30 30 H 1.08998 * 109.46666 * 59.99660 * 1 2 3 31 31 H 1.08997 * 109.47355 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47118 * 60.00382 * 3 2 1 33 33 H 1.09000 * 109.47661 * 299.99826 * 3 2 1 34 34 H 1.08998 * 109.47221 * 89.97581 * 7 6 5 35 35 H 1.09003 * 109.47499 * 209.97845 * 7 6 5 36 36 H 1.09000 * 109.47063 * 329.97944 * 7 6 5 37 37 H 1.08005 * 126.28804 * 180.23650 * 8 6 5 38 38 H 1.08997 * 110.36131 * 37.06450 * 13 12 10 39 39 H 1.09002 * 110.45433 * 274.79562 * 13 12 10 40 40 H 1.08995 * 111.00547 * 278.93426 * 14 13 12 41 41 H 1.09008 * 111.00391 * 155.08196 * 14 13 12 42 42 H 0.97003 * 119.99443 * 93.54918 * 17 15 14 43 43 H 0.96999 * 120.00139 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.47295 * 302.19209 * 28 26 12 45 45 H 1.08995 * 109.47125 * 62.19683 * 28 26 12 46 46 H 1.09003 * 109.46569 * 182.19339 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2762 1.1252 1.0564 6 7 5.6098 1.0192 0.6457 7 6 6.7734 0.9268 1.5309 8 6 5.6426 1.0115 -0.6965 9 6 4.3407 1.1209 -1.1423 10 6 3.8970 1.1562 -2.5478 11 8 2.7372 1.4076 -2.8130 12 7 4.7767 0.9100 -3.5386 13 6 6.2117 0.6215 -3.3616 14 6 6.6167 -0.1688 -4.6308 15 6 5.7699 0.5384 -5.7217 16 1 6.2691 1.4421 -6.0719 17 7 5.5020 -0.3696 -6.8397 18 6 6.4061 -0.4827 -7.8618 19 1 7.3171 0.0973 -7.8436 20 6 6.1524 -1.3435 -8.9208 21 7 7.0217 -1.4526 -9.9030 22 14 4.5773 -2.3472 -8.9519 23 1 4.8059 -3.6482 -8.2734 24 1 4.1713 -2.5877 -10.3599 25 1 3.5025 -1.6035 -8.2469 26 6 4.4646 0.8855 -4.9752 27 1 4.1047 1.8640 -5.2931 28 6 3.4039 -0.1799 -5.2590 29 1 -0.3632 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8900 34 1 6.9803 -0.1205 1.7509 35 1 7.6389 1.3731 1.0412 36 1 6.5667 1.4591 2.4594 37 1 6.5256 0.9364 -1.3139 38 1 6.3693 0.0144 -2.4702 39 1 6.7811 1.5485 -3.2940 40 1 6.3403 -1.2194 -4.5417 41 1 7.6825 -0.0627 -4.8336 42 1 4.6840 -0.8908 -6.8558 43 1 6.8447 -2.0544 -10.6428 44 1 3.7646 -1.1511 -4.9203 45 1 2.4854 0.0717 -4.7288 46 1 3.2060 -0.2191 -6.3302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986447472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:07 Heat of formation + Delta-G solvation = 17.435487 kcal Electronic energy + Delta-G solvation = -28100.835503 eV Core-core repulsion = 24221.082631 eV Total energy + Delta-G solvation = -3879.752872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.61156 -40.95433 -38.92248 -38.58547 -36.06072 -34.60784 -33.81427 -32.41213 -31.78522 -30.43967 -29.89660 -27.49320 -27.02007 -26.22715 -25.06442 -24.38390 -22.56533 -21.93915 -20.59197 -20.19059 -19.85294 -18.11313 -17.59281 -17.48929 -17.09258 -16.75982 -16.54577 -16.48801 -16.14791 -16.07095 -15.73656 -15.30297 -14.86102 -14.69349 -14.56560 -14.02970 -13.70848 -13.60439 -13.53357 -13.37083 -13.24346 -13.16401 -13.09892 -12.95296 -12.80853 -12.51335 -12.34884 -12.21813 -11.96508 -11.86663 -11.69624 -11.51132 -10.98219 -10.94551 -10.56583 -10.53778 -9.86082 -9.54999 -9.28772 -8.00641 -5.33248 0.48528 0.83956 1.36432 1.38755 1.38781 1.45761 1.97367 2.34487 2.48502 2.97417 3.28899 3.34710 3.55661 3.58941 3.67011 3.83115 3.95494 4.07582 4.15810 4.22284 4.33875 4.35704 4.37207 4.40265 4.46075 4.50210 4.51926 4.55123 4.61781 4.68348 4.73753 4.80429 4.81303 4.85025 5.04512 5.16982 5.20816 5.27069 5.35407 5.51519 5.80741 5.84325 6.12189 6.23816 6.41452 6.61541 7.08966 7.23869 7.85112 8.02667 9.20477 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.003423 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.368692 B = 8177.883427 C = 9406.441081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.141 3.859 4 C 0.109 3.891 5 N -0.305 5.305 6 N -0.352 5.352 7 C 0.083 3.917 8 C 0.107 3.893 9 C -0.299 4.299 10 C 0.605 3.395 11 O -0.578 6.578 12 N -0.606 5.606 13 C 0.089 3.911 14 C -0.145 4.145 15 C 0.169 3.831 16 H 0.073 0.927 17 N -0.748 5.748 18 C -0.222 4.222 19 H 0.069 0.931 20 C -0.057 4.057 21 N -0.980 5.980 22 Si 0.936 3.064 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.256 1.256 26 C 0.137 3.863 27 H 0.072 0.928 28 C -0.156 4.156 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.236 0.764 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.368 0.632 43 H 0.257 0.743 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 6.429 26.746 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.329 6.329 3 C 0.063 3.937 4 C -0.058 4.058 5 N -0.129 5.129 6 N -0.130 5.130 7 C -0.056 4.056 8 C -0.045 4.045 9 C -0.314 4.314 10 C 0.396 3.604 11 O -0.459 6.459 12 N -0.339 5.339 13 C -0.032 4.032 14 C -0.185 4.185 15 C 0.060 3.940 16 H 0.091 0.909 17 N -0.393 5.393 18 C -0.353 4.353 19 H 0.087 0.913 20 C -0.249 4.249 21 N -0.631 5.631 22 Si 0.764 3.236 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.181 1.181 26 C 0.032 3.968 27 H 0.090 0.910 28 C -0.215 4.215 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.205 0.795 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.357 6.437 27.941 28.769 hybrid contribution -1.137 -0.694 -1.639 2.112 sum -3.494 5.743 26.301 27.147 Atomic orbital electron populations 1.22916 0.78832 1.03885 1.00990 1.87848 1.21920 1.27452 1.95656 1.20704 0.85108 0.85597 1.02317 1.22076 0.96087 0.97970 0.89646 1.77063 0.88117 1.25011 1.22692 1.48807 1.06258 1.52249 1.05692 1.22526 0.82894 1.05461 0.94692 1.24400 0.99524 0.95214 0.85326 1.20137 0.93901 1.24254 0.93077 1.17125 0.83950 0.75728 0.83561 1.90678 1.19038 1.51928 1.84275 1.48318 1.10516 1.69772 1.05302 1.22977 0.79920 1.01058 0.99274 1.23357 1.01565 0.99465 0.94129 1.21376 0.92484 0.93253 0.86866 0.90895 1.43013 1.23002 1.50520 1.22759 1.19055 0.99697 1.18945 0.97617 0.91265 1.25318 1.00908 1.01766 0.96917 1.69841 1.38091 1.42770 1.12398 0.85716 0.81485 0.79657 0.76749 1.20585 1.22337 1.18137 1.21552 0.95949 0.98805 0.80445 0.91032 1.21982 0.99351 0.98823 1.01316 0.92099 0.93810 0.88471 0.90531 0.90448 0.88671 0.85280 0.88279 0.74878 0.87914 0.87695 0.91985 0.88952 0.79513 0.93428 0.92879 0.92100 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -11.73 10.69 -148.98 -1.59 -13.32 16 3 C 0.14 3.75 6.06 71.24 0.43 4.18 16 4 C 0.11 3.01 6.89 43.52 0.30 3.31 16 5 N -0.31 -7.53 12.50 -46.67 -0.58 -8.12 16 6 N -0.35 -5.86 3.98 -367.78 -1.46 -7.33 16 7 C 0.08 0.45 11.44 127.77 1.46 1.91 16 8 C 0.11 1.81 9.81 84.27 0.83 2.64 16 9 C -0.30 -7.78 6.07 -20.15 -0.12 -7.91 16 10 C 0.61 18.74 7.61 86.66 0.66 19.40 16 11 O -0.58 -21.64 13.86 -4.04 -0.06 -21.69 16 12 N -0.61 -16.75 3.08 -791.89 -2.44 -19.19 16 13 C 0.09 1.73 5.27 86.85 0.46 2.18 16 14 C -0.14 -3.91 6.77 31.99 0.22 -3.69 16 15 C 0.17 5.83 3.46 46.18 0.16 5.99 16 16 H 0.07 2.52 8.12 -2.38 -0.02 2.50 16 17 N -0.75 -33.09 4.82 -317.31 -1.53 -34.62 16 18 C -0.22 -11.97 10.46 84.04 0.88 -11.09 16 19 H 0.07 3.99 8.06 -2.91 -0.02 3.96 16 20 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 21 N -0.98 -61.33 13.97 21.65 0.30 -61.03 16 22 Si 0.94 45.13 27.73 68.60 1.90 47.03 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.26 -11.40 6.45 99.48 0.64 -10.76 16 26 C 0.14 4.44 3.47 45.34 0.16 4.60 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 C -0.16 -5.51 7.95 71.98 0.57 -4.94 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.08 2.24 6.42 -2.39 -0.02 2.23 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.10 0.48 8.14 -2.39 -0.02 0.47 16 37 H 0.24 1.97 4.75 -2.91 -0.01 1.95 16 38 H 0.10 1.44 5.29 -2.39 -0.01 1.43 16 39 H 0.11 1.39 8.03 -2.39 -0.02 1.37 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.37 16.25 2.79 -92.71 -0.26 15.99 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 45 H 0.06 2.21 6.81 -2.39 -0.02 2.19 16 46 H 0.06 2.24 6.60 -2.39 -0.02 2.22 16 Total: -1.00 -80.19 367.75 2.93 -77.25 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.68 Total: 25.41 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.72 Total: 15.60 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -5.71 Total: -130.28 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.65 Total: -35.01 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Total: -80.19 2.93 -77.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986447472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.690 kcal (2) G-P(sol) polarization free energy of solvation -80.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds