Wall clock time and date at job start Tue Mar 31 2020 14:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.86864 * 2 1 4 4 C 1.54320 * 109.88214 * 121.01315 * 2 1 3 5 5 H 1.08993 * 110.72438 * 23.07057 * 4 2 1 6 6 N 1.46505 * 110.72024 * 259.97511 * 4 2 1 7 7 C 1.36931 * 119.99788 * 155.00326 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.55165 * 102.93754 * 141.61617 * 4 2 1 16 16 C 1.54904 * 101.58189 * 324.49304 * 15 4 2 17 17 N 1.47015 * 109.88191 * 238.82610 * 2 1 3 18 18 C 1.34780 * 125.64994 * 61.60426 * 17 2 1 19 19 O 1.21493 * 120.00122 * 359.97438 * 18 17 2 20 20 C 1.48330 * 119.99835 * 179.97438 * 18 17 2 21 21 C 1.42272 * 126.93969 * 179.97438 * 20 18 17 22 22 C 1.35313 * 103.92580 * 180.02562 * 21 20 18 23 23 C 1.50697 * 126.66852 * 180.02562 * 22 21 20 24 24 N 1.46907 * 109.47034 * 89.99779 * 23 22 21 25 25 C 1.46899 * 110.99982 * 169.99956 * 24 23 22 26 26 C 1.46893 * 111.00118 * 293.95562 * 24 23 22 27 27 O 1.34016 * 106.66507 * 359.97438 * 22 21 20 28 28 N 1.20901 * 111.85005 * 359.70475 * 27 22 21 29 29 H 1.08997 * 109.46972 * 298.98032 * 1 2 3 30 30 H 1.08994 * 109.47433 * 58.99027 * 1 2 3 31 31 H 1.09003 * 109.46753 * 178.98660 * 1 2 3 32 32 H 0.97000 * 119.99792 * 335.00121 * 6 4 2 33 33 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 34 34 H 1.08998 * 111.00417 * 82.57044 * 15 4 2 35 35 H 1.09008 * 110.99880 * 206.42169 * 15 4 2 36 36 H 1.08999 * 110.37264 * 278.17600 * 16 15 4 37 37 H 1.09001 * 110.36580 * 155.84729 * 16 15 4 38 38 H 1.08002 * 128.03756 * 359.97438 * 21 20 18 39 39 H 1.08994 * 109.47635 * 209.99822 * 23 22 21 40 40 H 1.09000 * 109.46945 * 330.00015 * 23 22 21 41 41 H 1.09005 * 109.47041 * 60.00156 * 25 24 23 42 42 H 1.08991 * 109.47245 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47415 * 300.00160 * 25 24 23 44 44 H 1.09003 * 109.47159 * 59.99680 * 26 24 23 45 45 H 1.08996 * 109.47385 * 180.02562 * 26 24 23 46 46 H 1.09005 * 109.47214 * 300.00083 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 1 1.3041 -1.4413 1.6222 6 7 2.4555 0.1994 2.2873 7 6 2.4583 -0.1893 3.6002 8 1 2.1656 -1.1942 3.8666 9 6 2.8433 0.7064 4.5884 10 7 3.2006 1.9308 4.2638 11 14 2.8546 0.1737 6.3788 12 1 3.7857 -0.9705 6.5491 13 1 3.3005 1.3063 7.2294 14 1 1.4857 -0.2380 6.7814 15 6 3.2878 -1.5131 0.6944 16 6 2.8147 -1.8804 -0.7341 17 7 2.0300 -0.7156 -1.1829 18 6 1.8074 -0.3654 -2.4652 19 8 1.1416 0.6186 -2.7193 20 6 2.3752 -1.1813 -3.5661 21 6 2.2339 -0.9496 -4.9627 22 6 2.9281 -1.9616 -5.5326 23 6 3.1128 -2.2074 -7.0079 24 7 4.3185 -1.5090 -7.4735 25 6 4.6649 -1.9125 -8.8428 26 6 4.1524 -0.0525 -7.3799 27 8 3.4205 -2.7023 -4.5301 28 7 3.1130 -2.2573 -3.4488 29 1 -0.3633 0.4979 0.8990 30 1 -0.3634 0.5294 -0.8807 31 1 -0.3633 -1.0276 -0.0182 32 1 2.7188 1.1018 2.0480 33 1 3.4693 2.5568 4.9544 34 1 4.1655 -0.8677 0.6615 35 1 3.4854 -2.4091 1.2830 36 1 2.1888 -2.7724 -0.7090 37 1 3.6718 -2.0356 -1.3894 38 1 1.6965 -0.1519 -5.4539 39 1 3.2204 -3.2771 -7.1874 40 1 2.2442 -1.8336 -7.5500 41 1 3.8399 -1.6700 -9.5127 42 1 5.5606 -1.3804 -9.1628 43 1 4.8508 -2.9862 -8.8692 44 1 3.9657 0.2260 -6.3428 45 1 5.0591 0.4399 -7.7312 46 1 3.3088 0.2574 -7.9968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986455544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:36 Heat of formation + Delta-G solvation = 62.136774 kcal Electronic energy + Delta-G solvation = -27362.738929 eV Core-core repulsion = 23484.924450 eV Total energy + Delta-G solvation = -3877.814479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.23411 -39.94320 -38.07517 -37.47776 -34.32509 -33.99201 -32.73044 -31.47268 -30.89131 -29.15977 -28.10047 -27.79606 -25.20696 -25.06377 -23.18030 -22.97505 -22.68336 -21.63425 -20.11023 -18.86604 -17.99431 -17.45773 -17.26742 -16.85036 -15.98493 -15.80658 -15.75137 -15.26420 -15.04077 -14.65696 -14.08580 -13.91158 -13.67066 -13.47220 -13.37015 -12.95541 -12.90753 -12.75837 -12.37247 -12.32173 -12.15693 -12.09965 -11.91571 -11.79599 -11.38449 -11.12608 -11.03749 -10.81182 -10.58948 -10.56206 -10.25990 -10.13987 -9.95482 -9.81786 -9.72106 -8.94544 -8.93956 -8.47939 -7.04311 -5.81782 -3.12390 0.99196 1.45057 2.65395 2.90863 3.20240 3.41862 3.46437 3.47456 3.50159 3.84629 4.19072 4.53655 4.54569 4.64407 4.73743 4.83920 4.89399 4.99768 5.07545 5.09114 5.13807 5.24410 5.27081 5.39302 5.39489 5.53340 5.54800 5.60803 5.64047 5.71223 5.81829 5.98386 6.06894 6.15476 6.31668 6.34679 6.41384 6.44071 6.58229 6.60303 6.67622 6.91248 7.59789 7.65165 7.84192 8.17002 8.35305 9.46774 10.00622 10.35724 11.40269 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028604 B = 0.002384 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.653621 B =11739.947214 C =11927.280136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.081 0.919 4 C 0.177 3.823 5 H 0.069 0.931 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.097 3.903 17 N -0.591 5.591 18 C 0.606 3.394 19 O -0.529 6.529 20 C -0.016 4.016 21 C -0.176 4.176 22 C -0.027 4.027 23 C 0.134 3.866 24 N -0.545 5.545 25 C 0.025 3.975 26 C 0.015 3.985 27 O 0.128 5.872 28 N -0.323 5.323 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.178 0.822 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -9.589 -26.515 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.099 0.901 4 C 0.065 3.935 5 H 0.087 0.913 6 N -0.353 5.353 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.324 5.324 18 C 0.392 3.608 19 O -0.404 6.404 20 C -0.175 4.175 21 C -0.199 4.199 22 C -0.091 4.091 23 C 0.005 3.995 24 N -0.269 5.269 25 C -0.122 4.122 26 C -0.133 4.133 27 O 0.053 5.947 28 N -0.023 5.023 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.195 0.805 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.354 -9.863 -25.099 26.969 hybrid contribution -0.775 0.819 -0.081 1.130 sum -0.421 -9.045 -25.180 26.758 Atomic orbital electron populations 1.22053 0.94611 1.01717 1.02883 1.22066 0.94651 0.96994 0.84058 0.90081 1.21254 0.93654 0.91565 0.87013 0.91283 1.42340 1.79280 1.11831 1.01899 1.19169 1.38516 0.97005 0.82872 0.90996 1.24775 1.01836 0.95894 0.98155 1.69656 1.50912 1.04646 1.32528 0.86240 0.77752 0.77237 0.84762 1.21181 1.21682 1.21177 1.23595 1.01300 1.01815 0.92999 1.22575 0.95231 0.87608 0.97180 1.48418 1.50943 1.28648 1.04421 1.16478 0.80548 0.83508 0.80311 1.90776 1.40148 1.26584 1.82939 1.23497 1.02050 0.96403 0.95543 1.22408 1.04418 1.01467 0.91596 1.24130 0.98590 0.93402 0.92997 1.20497 0.92919 1.01402 0.84646 1.61903 1.34056 1.07126 1.23853 1.22406 1.00685 1.02064 0.87070 1.22548 1.01209 0.86832 1.02715 1.84810 1.55842 1.44178 1.09901 1.74325 1.13192 1.11675 1.03131 0.90799 0.91981 0.93029 0.77968 0.93307 0.90658 0.90357 0.91586 0.89966 0.80494 0.87900 0.90852 0.95196 0.90746 0.90821 0.90803 0.90792 0.95009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.09 37.16 0.34 -2.31 16 2 C 0.13 2.32 3.21 -66.96 -0.22 2.10 16 3 H 0.08 1.65 7.71 -51.93 -0.40 1.25 16 4 C 0.18 3.49 3.14 -66.09 -0.21 3.28 16 5 H 0.07 1.35 7.80 -51.93 -0.40 0.95 16 6 N -0.71 -17.53 5.22 -51.65 -0.27 -17.80 16 7 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 11 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 C -0.16 -2.73 6.77 -24.58 -0.17 -2.89 16 16 C 0.10 1.50 6.18 -2.53 -0.02 1.48 16 17 N -0.59 -10.09 3.07 -163.94 -0.50 -10.60 16 18 C 0.61 10.39 7.67 -12.11 -0.09 10.30 16 19 O -0.53 -10.19 16.00 5.37 0.09 -10.11 16 20 C -0.02 -0.23 7.02 -82.52 -0.58 -0.81 16 21 C -0.18 -1.95 9.58 -39.08 -0.37 -2.32 16 22 C -0.03 -0.26 6.34 -35.35 -0.22 -0.48 16 23 C 0.13 0.80 5.53 -4.97 -0.03 0.78 16 24 N -0.54 -3.69 5.01 -252.73 -1.27 -4.95 16 25 C 0.03 0.11 9.57 60.06 0.57 0.69 16 26 C 0.01 0.10 9.29 60.06 0.56 0.66 16 27 O 0.13 1.48 11.18 17.24 0.19 1.68 16 28 N -0.32 -4.41 9.30 33.29 0.31 -4.10 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 1.08 6.90 -51.93 -0.36 0.73 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.39 10.21 7.56 -40.82 -0.31 9.91 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.24 6.22 -51.93 -0.32 0.92 16 38 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 0.45 8.06 -51.93 -0.42 0.04 16 40 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 41 H 0.03 0.11 8.14 -51.93 -0.42 -0.32 16 42 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16 43 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 44 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 45 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 46 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -31.85 376.82 -7.91 -39.76 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.16 Total: 7.11 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.68 Total: 3.34 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -1.00 Total: -64.51 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.28 Total: -8.43 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.85 -7.91 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986455544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.896 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds