Wall clock time and date at job start Tue Mar 31 2020 14:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.87745 * 2 1 4 4 C 1.54328 * 110.00824 * 121.09932 * 2 1 3 5 5 H 1.09002 * 110.71919 * 260.04522 * 4 2 1 6 6 N 1.46501 * 110.72203 * 23.13831 * 4 2 1 7 7 C 1.36931 * 119.99906 * 204.99880 * 6 4 2 8 8 H 1.07996 * 120.00396 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99827 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00028 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99968 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47263 * 89.99995 * 11 9 7 13 13 H 1.48503 * 109.47034 * 210.00328 * 11 9 7 14 14 H 1.48502 * 109.47320 * 329.99862 * 11 9 7 15 15 C 1.55152 * 102.94225 * 141.68368 * 4 2 1 16 16 C 1.55138 * 101.48574 * 324.32774 * 15 4 2 17 17 N 1.47018 * 109.88201 * 238.98230 * 2 1 3 18 18 C 1.34780 * 125.65059 * 61.45395 * 17 2 1 19 19 O 1.21498 * 119.99653 * 359.97438 * 18 17 2 20 20 C 1.48326 * 120.00322 * 179.97438 * 18 17 2 21 21 C 1.42271 * 126.94098 * 179.97438 * 20 18 17 22 22 C 1.35316 * 103.92040 * 180.22769 * 21 20 18 23 23 C 1.50703 * 126.66075 * 179.70443 * 22 21 20 24 24 N 1.46898 * 109.47265 * 90.00009 * 23 22 21 25 25 C 1.46894 * 111.00057 * 169.99904 * 24 23 22 26 26 C 1.46904 * 110.99776 * 293.95370 * 24 23 22 27 27 O 1.34017 * 106.67079 * 359.59501 * 22 21 20 28 28 N 1.20904 * 111.84554 * 0.44304 * 27 22 21 29 29 H 1.08995 * 109.47604 * 179.56125 * 1 2 3 30 30 H 1.09000 * 109.46721 * 299.56471 * 1 2 3 31 31 H 1.08997 * 109.47043 * 59.56085 * 1 2 3 32 32 H 0.96998 * 119.99487 * 25.00415 * 6 4 2 33 33 H 0.97007 * 119.99984 * 179.97438 * 10 9 7 34 34 H 1.08999 * 111.01153 * 82.56879 * 15 4 2 35 35 H 1.09004 * 111.00175 * 206.38733 * 15 4 2 36 36 H 1.08997 * 110.49694 * 278.45741 * 16 15 4 37 37 H 1.08996 * 110.34020 * 156.05593 * 16 15 4 38 38 H 1.08002 * 128.03445 * 359.96247 * 21 20 18 39 39 H 1.09000 * 109.47216 * 209.99887 * 23 22 21 40 40 H 1.09002 * 109.47366 * 329.99459 * 23 22 21 41 41 H 1.08999 * 109.47462 * 60.00159 * 25 24 23 42 42 H 1.09003 * 109.47243 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47012 * 299.99749 * 25 24 23 44 44 H 1.09001 * 109.47278 * 59.99837 * 26 24 23 45 45 H 1.09002 * 109.47058 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.46883 * 299.99533 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0580 -0.7490 1.2417 5 1 2.3556 -0.0452 2.0190 6 7 1.0514 -1.6843 1.7498 7 6 1.0685 -2.0598 3.0666 8 1 1.8238 -1.6661 3.7306 9 6 0.1151 -2.9464 3.5479 10 7 0.1312 -3.3069 4.8136 11 14 -1.1908 -3.6280 2.3991 12 1 -0.6974 -4.8833 1.7780 13 1 -2.4290 -3.9100 3.1691 14 1 -1.4844 -2.6323 1.3372 15 6 3.2917 -1.5108 0.6895 16 6 2.8130 -1.8795 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8050 -0.3603 -2.4662 19 8 1.1368 0.6228 -2.7177 20 6 2.3730 -1.1729 -3.5694 21 6 2.2294 -0.9389 -4.9654 22 6 2.9213 -1.9511 -5.5380 23 6 3.0972 -2.1986 -7.0141 24 7 4.2993 -1.4997 -7.4880 25 6 4.6377 -1.9047 -8.8589 26 6 4.1322 -0.0432 -7.3954 27 8 3.4216 -2.6891 -4.5375 28 7 3.1089 -2.2506 -3.4551 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3633 0.5071 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 0.3730 -2.0377 1.1534 33 1 -0.5354 -3.9263 5.1500 34 1 4.1681 -0.8636 0.6566 35 1 3.4923 -2.4071 1.2764 36 1 2.1851 -2.7701 -0.7136 37 1 3.6681 -2.0359 -1.3969 38 1 1.6896 -0.1414 -5.4543 39 1 3.2048 -3.2685 -7.1929 40 1 2.2249 -1.8265 -7.5515 41 1 3.8084 -1.6640 -9.5241 42 1 5.5310 -1.3721 -9.1851 43 1 4.8245 -2.9783 -8.8849 44 1 3.9516 0.2366 -6.3575 45 1 5.0367 0.4497 -7.7520 46 1 3.2847 0.2650 -8.0076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986455545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:38 Heat of formation + Delta-G solvation = 72.047607 kcal Electronic energy + Delta-G solvation = -27809.699999 eV Core-core repulsion = 23932.315287 eV Total energy + Delta-G solvation = -3877.384713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.24374 -40.05905 -38.09407 -37.66125 -34.35912 -33.97318 -32.72019 -31.58762 -30.93598 -29.43492 -28.12642 -27.80881 -25.48066 -25.07490 -23.20638 -23.11622 -22.71398 -21.66573 -19.79570 -18.69928 -18.01494 -17.90797 -17.46046 -16.85160 -16.20147 -15.82381 -15.79157 -15.29015 -15.00676 -14.62379 -14.28989 -13.99030 -13.71870 -13.52008 -13.41228 -12.96147 -12.92646 -12.75454 -12.47249 -12.38720 -12.31403 -12.12951 -11.94870 -11.77808 -11.41367 -11.12351 -11.10304 -10.78053 -10.72685 -10.57687 -10.32817 -10.19277 -9.97480 -9.83007 -9.58605 -8.99850 -8.96167 -8.52479 -7.35278 -5.82962 -3.19357 0.98338 1.43164 2.64036 2.88861 3.16780 3.33380 3.36780 3.42135 3.48337 3.83331 4.17799 4.52589 4.53711 4.62343 4.71835 4.82159 4.87341 4.95987 4.99632 5.06487 5.11448 5.16017 5.22449 5.24359 5.37695 5.50398 5.51345 5.55011 5.59115 5.61624 5.68981 5.83367 6.03859 6.16884 6.28205 6.32427 6.36876 6.39291 6.47759 6.61077 6.67139 6.76757 7.55278 7.82684 7.92500 8.13196 8.35901 9.13077 9.85580 10.04550 11.34912 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.002851 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.918510 B = 9819.598619 C =10077.225751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.080 0.920 4 C 0.178 3.822 5 H 0.082 0.918 6 N -0.738 5.738 7 C -0.247 4.247 8 H 0.093 0.907 9 C 0.010 3.990 10 N -0.930 5.930 11 Si 0.878 3.122 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.158 4.158 16 C 0.101 3.899 17 N -0.593 5.593 18 C 0.607 3.393 19 O -0.531 6.531 20 C -0.018 4.018 21 C -0.176 4.176 22 C -0.027 4.027 23 C 0.133 3.867 24 N -0.545 5.545 25 C 0.025 3.975 26 C 0.015 3.985 27 O 0.130 5.870 28 N -0.321 5.321 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.365 0.635 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.177 0.823 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 4.102 -27.343 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.098 0.902 4 C 0.067 3.933 5 H 0.100 0.900 6 N -0.381 5.381 7 C -0.376 4.376 8 H 0.111 0.889 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.708 3.292 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.199 4.199 16 C -0.021 4.021 17 N -0.326 5.326 18 C 0.392 3.608 19 O -0.407 6.407 20 C -0.177 4.177 21 C -0.199 4.199 22 C -0.091 4.091 23 C 0.005 3.995 24 N -0.269 5.269 25 C -0.122 4.122 26 C -0.133 4.133 27 O 0.054 5.946 28 N -0.021 5.021 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.200 0.800 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.195 0.805 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.845 3.826 -25.856 27.594 hybrid contribution -2.005 0.074 -1.726 2.646 sum 6.841 3.900 -27.582 28.684 Atomic orbital electron populations 1.22000 0.94355 1.02480 1.02357 1.22141 0.95340 0.96148 0.84275 0.90226 1.21170 0.88666 0.91430 0.92048 0.90048 1.42883 1.33043 1.53088 1.09110 1.19056 1.12312 1.21706 0.84548 0.88917 1.24638 0.98739 0.99591 0.95699 1.69690 1.37418 1.37713 1.12884 0.86675 0.82552 0.79297 0.80660 1.21046 1.21585 1.20268 1.23556 0.99094 1.02689 0.94598 1.22574 0.95182 0.87794 0.96590 1.48541 1.51003 1.28646 1.04405 1.16469 0.80440 0.83518 0.80333 1.90767 1.39995 1.26840 1.83083 1.23479 1.02383 0.96271 0.95542 1.22397 1.04485 1.01497 0.91548 1.24137 0.98527 0.93386 0.93031 1.20505 0.92951 1.01448 0.84601 1.61906 1.34432 1.07025 1.23565 1.22409 1.00690 1.02098 0.87048 1.22545 1.01148 0.86910 1.02682 1.84822 1.55321 1.44599 1.09893 1.74348 1.13293 1.11437 1.03050 0.92389 0.90806 0.92249 0.80023 0.92964 0.91520 0.88880 0.91228 0.90002 0.80515 0.87851 0.90831 0.95181 0.90753 0.90790 0.90847 0.90827 0.95014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.51 37.16 0.32 -2.47 16 2 C 0.12 2.14 3.42 -66.95 -0.23 1.91 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.18 3.31 3.47 -66.10 -0.23 3.08 16 5 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 6 N -0.74 -16.73 4.36 -51.65 -0.23 -16.96 16 7 C -0.25 -6.66 10.44 -15.06 -0.16 -6.82 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 10 N -0.93 -28.65 13.97 55.49 0.78 -27.87 16 11 Si 0.88 21.98 27.74 -169.99 -4.71 17.26 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.59 6.42 56.52 0.36 -6.23 16 15 C -0.16 -2.60 6.79 -24.46 -0.17 -2.76 16 16 C 0.10 1.63 6.18 -2.40 -0.01 1.62 16 17 N -0.59 -9.99 3.06 -163.79 -0.50 -10.49 16 18 C 0.61 10.27 7.67 -12.11 -0.09 10.18 16 19 O -0.53 -9.94 15.98 5.37 0.09 -9.85 16 20 C -0.02 -0.26 7.02 -82.52 -0.58 -0.84 16 21 C -0.18 -1.97 9.58 -39.07 -0.37 -2.34 16 22 C -0.03 -0.26 6.34 -35.35 -0.22 -0.48 16 23 C 0.13 0.83 5.52 -4.98 -0.03 0.80 16 24 N -0.54 -3.64 5.01 -252.72 -1.27 -4.91 16 25 C 0.03 0.11 9.57 60.06 0.57 0.68 16 26 C 0.02 0.10 9.29 60.07 0.56 0.65 16 27 O 0.13 1.55 11.18 17.24 0.19 1.74 16 28 N -0.32 -4.53 9.30 33.30 0.31 -4.22 16 29 H 0.06 1.15 6.12 -51.93 -0.32 0.83 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.06 6.87 -51.93 -0.36 0.71 16 32 H 0.36 8.40 3.54 -40.82 -0.14 8.26 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.24 6.22 -51.93 -0.32 0.92 16 38 H 0.18 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.10 0.50 8.06 -51.93 -0.42 0.08 16 40 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 41 H 0.03 0.11 8.14 -51.93 -0.42 -0.32 16 42 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 43 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 44 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 45 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 46 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -32.41 369.67 -7.49 -39.90 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.97 Total: 6.44 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.74 Total: 3.38 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: -0.91 Total: -64.45 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.28 Total: -8.11 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.41 -7.49 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986455545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.949 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds