Wall clock time and date at job start Tue Mar 31 2020 14:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.99570 * 2 1 4 4 C 1.54315 * 109.88156 * 238.90519 * 2 1 3 5 5 H 1.09005 * 110.72207 * 336.75541 * 4 2 1 6 6 N 1.46497 * 110.72358 * 100.02690 * 4 2 1 7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2 8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99782 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46947 * 59.99182 * 11 9 7 13 13 H 1.48495 * 109.47423 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46928 * 299.99992 * 11 9 7 15 15 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.88216 * 121.09352 * 2 1 3 18 18 C 1.34776 * 125.65312 * 298.41902 * 17 2 1 19 19 O 1.21494 * 119.99954 * 359.97438 * 18 17 2 20 20 C 1.48331 * 120.00159 * 180.02562 * 18 17 2 21 21 C 1.42271 * 126.93725 * 179.97438 * 20 18 17 22 22 C 1.35316 * 103.92245 * 179.97438 * 21 20 18 23 23 C 1.50695 * 126.66859 * 180.02562 * 22 21 20 24 24 N 1.46900 * 109.47482 * 89.99869 * 23 22 21 25 25 C 1.46896 * 111.00104 * 66.04755 * 24 23 22 26 26 C 1.46904 * 111.00329 * 190.00301 * 24 23 22 27 27 O 1.34020 * 106.66717 * 0.02562 * 22 21 20 28 28 N 1.20904 * 111.84610 * 359.70264 * 27 22 21 29 29 H 1.09001 * 109.47001 * 181.09759 * 1 2 3 30 30 H 1.09003 * 109.47113 * 301.09344 * 1 2 3 31 31 H 1.09000 * 109.46955 * 61.08928 * 1 2 3 32 32 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 33 33 H 0.97006 * 120.00022 * 180.02562 * 10 9 7 34 34 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 35 35 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 36 36 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 37 37 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 38 38 H 1.07996 * 128.04345 * 0.02562 * 21 20 18 39 39 H 1.09005 * 109.47343 * 210.00185 * 23 22 21 40 40 H 1.09004 * 109.47235 * 329.99826 * 23 22 21 41 41 H 1.08999 * 109.47074 * 59.99831 * 25 24 23 42 42 H 1.09003 * 109.47263 * 180.02562 * 25 24 23 43 43 H 1.09007 * 109.46987 * 300.00454 * 25 24 23 44 44 H 1.08999 * 109.47050 * 59.99511 * 26 24 23 45 45 H 1.08996 * 109.47211 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.46794 * 300.00110 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4459 -1.6182 6 7 2.4555 0.1961 -2.2875 7 6 2.5574 -0.2225 -3.5873 8 1 2.3429 -1.2498 -3.8422 9 6 2.9376 0.6733 -4.5772 10 7 3.1995 1.9253 -4.2664 11 14 3.0773 0.1022 -6.3502 12 1 1.7603 -0.4053 -6.8120 13 1 3.4960 1.2415 -7.2057 14 1 4.0862 -0.9836 -6.4424 15 6 3.2876 -1.5142 -0.6924 16 6 2.8156 -1.8794 0.7371 17 7 2.0300 -0.7140 1.1839 18 6 1.8071 -0.3623 2.4657 19 8 1.1417 0.6224 2.7185 20 6 2.3749 -1.1766 3.5678 21 6 2.2341 -0.9426 4.9640 22 6 2.9282 -1.9539 5.5353 23 6 3.1123 -2.1980 7.0109 24 7 2.0266 -3.0555 7.5048 25 6 2.1073 -4.3988 6.9157 26 6 2.0349 -3.1229 8.9722 27 8 3.4200 -2.6964 4.5339 28 7 3.1028 -2.2595 3.4521 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3633 0.5307 0.8800 31 1 -0.3633 0.4968 -0.8996 32 1 2.6485 1.1187 -2.0585 33 1 3.4648 2.5514 -4.9582 34 1 3.4852 -2.4110 -1.2797 35 1 4.1656 -0.8690 -0.6610 36 1 2.1900 -2.7718 0.7137 37 1 3.6731 -2.0334 1.3921 38 1 1.6972 -0.1439 5.4541 39 1 4.0700 -2.6901 7.1811 40 1 3.0936 -1.2462 7.5418 41 1 3.0610 -4.8550 7.1807 42 1 1.2917 -5.0127 7.2979 43 1 2.0287 -4.3251 5.8309 44 1 1.9037 -2.1216 9.3826 45 1 1.2209 -3.7636 9.3111 46 1 2.9860 -3.5329 9.3117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986455546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:41 Heat of formation + Delta-G solvation = 61.591389 kcal Electronic energy + Delta-G solvation = -27335.120583 eV Core-core repulsion = 23457.282454 eV Total energy + Delta-G solvation = -3877.838128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.24101 -39.93949 -38.02460 -37.47490 -34.32606 -34.00790 -32.74288 -31.46604 -30.89250 -29.14711 -28.08099 -27.80355 -25.20466 -25.03490 -23.30014 -23.00004 -22.56854 -21.63009 -20.10267 -18.88209 -18.05747 -17.49148 -17.24462 -16.82502 -15.97645 -15.81117 -15.72178 -15.21339 -15.02946 -14.65701 -14.10035 -13.90476 -13.65173 -13.36328 -13.26951 -12.94524 -12.88116 -12.75966 -12.67817 -12.28388 -12.19517 -12.12651 -11.91043 -11.80399 -11.37308 -11.11068 -11.03176 -10.81426 -10.58112 -10.55769 -10.26837 -10.13133 -9.93033 -9.79265 -9.71803 -8.95255 -8.94034 -8.47619 -7.03670 -5.81452 -3.12108 0.97978 1.50542 2.63457 2.91116 3.21930 3.41851 3.46428 3.47482 3.53098 3.85322 4.12149 4.54615 4.54851 4.68650 4.73825 4.88053 4.88964 5.00187 5.07331 5.12558 5.13048 5.25123 5.28999 5.37917 5.39455 5.51478 5.53423 5.62510 5.68820 5.71478 5.81065 5.98473 6.07168 6.15373 6.32072 6.33130 6.39705 6.44166 6.58265 6.60599 6.67485 6.92359 7.59920 7.65472 7.83097 8.17782 8.35713 9.47109 10.01076 10.36152 11.40606 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.002357 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.322409 B =11879.129591 C =12240.954970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.098 3.902 17 N -0.592 5.592 18 C 0.606 3.394 19 O -0.527 6.527 20 C -0.016 4.016 21 C -0.157 4.157 22 C -0.037 4.037 23 C 0.137 3.863 24 N -0.545 5.545 25 C 0.019 3.981 26 C 0.025 3.975 27 O 0.116 5.884 28 N -0.323 5.323 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.181 0.819 39 H 0.062 0.938 40 H 0.111 0.889 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -11.657 26.243 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.025 4.025 17 N -0.325 5.325 18 C 0.392 3.608 19 O -0.402 6.402 20 C -0.175 4.175 21 C -0.180 4.180 22 C -0.101 4.101 23 C 0.009 3.991 24 N -0.269 5.269 25 C -0.129 4.129 26 C -0.123 4.123 27 O 0.041 5.959 28 N -0.025 5.025 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.198 0.802 39 H 0.080 0.920 40 H 0.129 0.871 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.899 -11.609 25.003 27.581 hybrid contribution 0.648 0.119 -0.211 0.692 sum -0.251 -11.490 24.792 27.327 Atomic orbital electron populations 1.22060 0.94557 1.01773 1.02921 1.21994 0.94641 0.96952 0.83953 0.90049 1.21245 0.93610 0.91603 0.87010 0.91596 1.42332 1.80965 1.09087 1.03103 1.19151 1.39375 0.95140 0.83789 0.91020 1.24774 1.02070 0.95654 0.98196 1.69661 1.52425 1.02984 1.32694 0.86241 0.77829 0.77273 0.84644 1.21180 1.21683 1.21202 1.23587 1.01322 1.01799 0.92952 1.22575 0.95182 0.87620 0.97168 1.48426 1.50985 1.28672 1.04427 1.16472 0.80540 0.83534 0.80284 1.90781 1.40024 1.26501 1.82942 1.23535 1.02298 0.95984 0.95710 1.22387 1.02684 1.01766 0.91166 1.24133 0.99783 0.93382 0.92778 1.20520 0.93848 0.99923 0.84830 1.61973 1.44670 1.12530 1.07773 1.22484 1.00796 0.88774 1.00835 1.22404 1.00931 1.02917 0.86040 1.84793 1.56196 1.44763 1.10133 1.74307 1.13665 1.11540 1.02961 0.92987 0.91902 0.90808 0.77961 0.93319 0.90411 0.90628 0.91623 0.90036 0.80205 0.91953 0.87085 0.94889 0.90857 0.91168 0.90848 0.90748 0.95136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.09 37.16 0.34 -2.33 16 2 C 0.13 2.36 3.21 -66.96 -0.21 2.14 16 3 H 0.08 1.66 7.69 -51.93 -0.40 1.26 16 4 C 0.18 3.50 3.12 -66.10 -0.21 3.29 16 5 H 0.07 1.30 7.83 -51.93 -0.41 0.89 16 6 N -0.71 -17.56 5.25 -51.66 -0.27 -17.83 16 7 C -0.24 -6.59 9.98 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 11 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 C -0.16 -2.72 6.77 -24.58 -0.17 -2.89 16 16 C 0.10 1.51 6.17 -2.50 -0.02 1.49 16 17 N -0.59 -10.13 3.07 -163.91 -0.50 -10.63 16 18 C 0.61 10.47 7.67 -12.11 -0.09 10.38 16 19 O -0.53 -10.26 16.00 5.37 0.09 -10.17 16 20 C -0.02 -0.23 7.02 -82.53 -0.58 -0.81 16 21 C -0.16 -1.80 10.92 -39.07 -0.43 -2.23 16 22 C -0.04 -0.35 6.03 -35.35 -0.21 -0.57 16 23 C 0.14 0.83 5.52 -4.98 -0.03 0.80 16 24 N -0.54 -3.57 5.01 -252.72 -1.27 -4.84 16 25 C 0.02 0.12 9.37 60.06 0.56 0.68 16 26 C 0.02 0.10 9.57 60.07 0.57 0.68 16 27 O 0.12 1.30 10.61 17.23 0.18 1.48 16 28 N -0.32 -4.36 9.31 33.29 0.31 -4.06 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.10 6.90 -51.93 -0.36 0.75 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.39 10.21 7.51 -40.82 -0.31 9.90 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.08 1.22 6.24 -51.93 -0.32 0.89 16 38 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 40 H 0.11 0.48 8.06 -51.93 -0.42 0.06 16 41 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.07 0.56 6.83 -51.92 -0.35 0.20 16 44 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 45 H 0.07 0.29 8.12 -51.93 -0.42 -0.14 16 46 H 0.03 0.11 8.14 -51.93 -0.42 -0.32 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -31.85 377.84 -7.96 -39.81 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.18 Total: 7.02 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.71 Total: 3.52 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -1.01 Total: -64.42 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.27 Total: -8.69 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.85 -7.96 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986455546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.405 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds